Wall clock time and date at job start Tue Mar 31 2020 15:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 H 1.09010 * 109.46637 * 55.00544 * 3 2 1 5 5 C 1.50703 * 109.47108 * 175.00333 * 3 2 1 6 6 H 1.07995 * 119.99722 * 120.00233 * 5 3 2 7 7 C 1.37875 * 119.99601 * 300.00432 * 5 3 2 8 8 N 1.31513 * 120.00644 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47088 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47639 * 119.99761 * 9 7 5 12 12 H 1.48504 * 109.46996 * 240.00083 * 9 7 5 13 13 O 1.45197 * 109.47594 * 295.00553 * 3 2 1 14 14 C 1.34232 * 116.99868 * 90.00104 * 13 3 2 15 15 O 1.20817 * 120.00170 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99801 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47217 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47503 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.35337 * 54.82573 * 18 17 16 20 20 C 1.52878 * 109.41764 * 174.65582 * 18 17 16 21 21 C 1.50713 * 109.69880 * 168.25565 * 20 18 17 22 22 C 1.38152 * 119.92988 * 147.40231 * 21 20 18 23 23 C 1.38258 * 120.05639 * 179.16022 * 22 21 20 24 24 C 1.38307 * 120.11926 * 359.97438 * 23 22 21 25 25 C 1.38076 * 120.07982 * 0.27052 * 24 23 22 26 26 C 1.38739 * 120.08572 * 327.06276 * 21 20 18 27 27 N 1.39762 * 120.24301 * 1.18743 * 26 21 20 28 28 C 1.34425 * 120.67296 * 14.13859 * 27 26 21 29 29 O 1.21292 * 119.70238 * 185.89040 * 28 27 26 30 30 H 1.08997 * 109.47591 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46724 * 299.99299 * 1 2 3 33 33 H 1.09003 * 109.46724 * 240.00701 * 2 1 3 34 34 H 1.08997 * 109.47591 * 120.00445 * 2 1 3 35 35 H 0.97003 * 120.00175 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47733 * 59.99432 * 16 14 13 37 37 H 1.09002 * 109.46722 * 299.99326 * 16 14 13 38 38 H 1.09005 * 109.47105 * 59.99934 * 17 16 14 39 39 H 1.09002 * 109.47089 * 300.00099 * 17 16 14 40 40 H 1.09001 * 109.43543 * 288.34691 * 20 18 17 41 41 H 1.08997 * 109.43289 * 48.20906 * 20 18 17 42 42 H 1.08000 * 119.96978 * 359.12884 * 22 21 20 43 43 H 1.07994 * 119.94187 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.95969 * 180.26148 * 24 23 22 45 45 H 1.08011 * 120.03288 * 179.97438 * 25 24 23 46 46 H 0.97002 * 119.66181 * 194.15807 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8420 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0049 0.8812 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3991 1.6166 2.6100 12 1 6.4971 -0.5176 1.4626 13 8 1.6558 2.0918 -1.2406 14 6 0.4726 2.7256 -1.2557 15 8 -0.2192 2.7370 -0.2653 16 6 0.0068 3.4219 -2.5084 17 6 -1.3619 4.0587 -2.2590 18 6 -1.8346 4.7662 -3.5306 19 1 -1.8244 4.0608 -4.3615 20 6 -3.2569 5.2871 -3.3235 21 6 -3.6231 6.2241 -4.4457 22 6 -4.9312 6.2960 -4.8845 23 6 -5.2733 7.1673 -5.9020 24 6 -4.3078 7.9693 -6.4830 25 6 -2.9980 7.8980 -6.0520 26 6 -2.6499 7.0192 -5.0335 27 7 -1.3218 6.9379 -4.6059 28 6 -0.9101 5.9146 -3.8377 29 8 0.2164 5.9160 -3.3879 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8295 -0.0612 2.9498 36 1 -0.0722 2.6974 -3.3189 37 1 0.7237 4.1961 -2.7816 38 1 -1.2833 4.7832 -1.4484 39 1 -2.0786 3.2842 -1.9858 40 1 -3.9522 4.4478 -3.3099 41 1 -3.3135 5.8194 -2.3740 42 1 -5.6870 5.6708 -4.4326 43 1 -6.2964 7.2223 -6.2433 44 1 -4.5787 8.6519 -7.2747 45 1 -2.2445 8.5244 -6.5065 46 1 -0.6908 7.6272 -4.8660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188019058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:09 Heat of formation + Delta-G solvation = -116.596229 kcal Electronic energy + Delta-G solvation = -27914.047283 eV Core-core repulsion = 23960.700858 eV Total energy + Delta-G solvation = -3953.346425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.44546 -39.54166 -39.00344 -36.07702 -35.57418 -35.16307 -33.40622 -32.46198 -31.28677 -29.98060 -29.45820 -27.23192 -25.32481 -23.94637 -23.11351 -23.06738 -22.13080 -20.41332 -19.45470 -19.14821 -18.21925 -17.53131 -16.78004 -16.60790 -16.31941 -15.83989 -15.64451 -15.16523 -14.94763 -14.70813 -14.41414 -14.30565 -13.88598 -13.80492 -13.18339 -13.01789 -12.84977 -12.61402 -12.46106 -12.30740 -11.86235 -11.65586 -11.45605 -11.34651 -11.20896 -11.16333 -11.05796 -11.00778 -11.00053 -10.89504 -10.56856 -10.20689 -9.85171 -9.71984 -9.41018 -9.24313 -9.22268 -8.70884 -8.38849 -8.37005 -6.12342 -4.18491 0.81465 0.91038 2.29813 2.70283 3.21654 3.27581 3.34283 3.39130 3.39996 3.76841 4.05698 4.26932 4.29416 4.40489 4.52282 4.64428 4.80413 4.92000 4.95647 5.07840 5.19387 5.24329 5.32309 5.37673 5.49127 5.53168 5.67519 5.74069 5.81943 5.98398 6.05536 6.11410 6.24519 6.27894 6.29842 6.33740 6.35733 6.52599 6.58337 6.86472 6.94339 7.04734 7.24248 7.37021 7.69617 7.76950 7.82405 8.05649 8.25148 8.75997 9.01914 9.46673 10.94547 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002252 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.023568 B =12432.879677 C =13237.110148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.358 6.358 14 C 0.454 3.546 15 O -0.525 6.525 16 C -0.134 4.134 17 C -0.086 4.086 18 C -0.105 4.105 19 H 0.111 0.889 20 C -0.074 4.074 21 C -0.123 4.123 22 C -0.082 4.082 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.156 4.156 26 C 0.164 3.836 27 N -0.666 5.666 28 C 0.521 3.479 29 O -0.504 6.504 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 13.233 -17.807 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.064 0.936 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.274 6.274 14 C 0.298 3.702 15 O -0.416 6.416 16 C -0.171 4.171 17 C -0.124 4.124 18 C -0.126 4.126 19 H 0.129 0.871 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.163 4.163 24 C -0.109 4.109 25 C -0.177 4.177 26 C 0.068 3.932 27 N -0.310 5.310 28 C 0.310 3.690 29 O -0.377 6.377 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.011 12.924 -16.950 27.906 hybrid contribution 1.106 0.291 0.000 1.144 sum -16.905 13.215 -16.950 27.344 Atomic orbital electron populations 1.21850 0.98415 0.98826 1.00767 1.22007 0.92626 0.99456 1.03239 1.20635 0.94939 0.88731 0.78988 0.93608 1.21114 0.89873 1.38497 1.06125 0.91323 1.24889 0.99180 0.94887 0.95112 1.69904 1.35197 1.38131 1.09488 0.86247 0.84070 0.77800 0.78194 1.19487 1.20798 1.20768 1.86474 1.34593 1.62487 1.43832 1.23304 0.80625 0.76559 0.89724 1.90575 1.55732 1.58920 1.36327 1.21716 0.98969 1.01481 0.94977 1.21245 0.96152 1.00176 0.94846 1.21340 0.94008 0.95514 1.01729 0.87092 1.20520 0.95120 0.98494 0.96959 1.19543 0.93165 1.00260 0.99574 1.20902 0.94700 0.98155 0.96285 1.21107 0.99730 0.97614 0.97898 1.20963 0.92231 0.98515 0.99205 1.20800 0.97667 1.01355 0.97862 1.17656 0.83602 0.97060 0.94880 1.43682 1.09616 1.26567 1.51151 1.20845 0.88380 0.83201 0.76621 1.90730 1.20675 1.77421 1.48914 0.94911 0.94950 0.92849 0.94081 0.87430 0.92544 0.89081 0.85330 0.90375 0.89820 0.88721 0.89476 0.85242 0.85740 0.85567 0.85485 0.75207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.16 0.32 -2.85 16 2 C -0.14 -3.46 5.49 -26.73 -0.15 -3.61 16 3 C 0.22 6.08 2.25 -27.88 -0.06 6.01 16 4 H 0.05 1.40 7.16 -51.92 -0.37 1.03 16 5 C -0.52 -15.06 8.90 -34.44 -0.31 -15.36 16 6 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.74 11.29 55.43 0.63 -25.11 16 9 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 O -0.36 -8.97 9.81 -39.26 -0.39 -9.35 16 14 C 0.45 9.86 6.41 36.01 0.23 10.09 16 15 O -0.52 -12.35 13.12 -18.74 -0.25 -12.60 16 16 C -0.13 -2.15 5.55 -27.88 -0.15 -2.31 16 17 C -0.09 -1.12 3.72 -26.73 -0.10 -1.22 16 18 C -0.10 -1.04 2.48 -91.88 -0.23 -1.27 16 19 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.07 -0.58 5.29 -27.94 -0.15 -0.73 16 21 C -0.12 -0.96 5.67 -104.46 -0.59 -1.56 16 22 C -0.08 -0.52 9.68 -39.61 -0.38 -0.91 16 23 C -0.14 -0.83 10.04 -39.55 -0.40 -1.23 16 24 C -0.09 -0.52 10.04 -39.62 -0.40 -0.92 16 25 C -0.16 -1.03 9.90 -39.38 -0.39 -1.42 16 26 C 0.16 1.35 6.53 -83.79 -0.55 0.80 16 27 N -0.67 -6.07 5.35 -10.03 -0.05 -6.12 16 28 C 0.52 6.09 7.44 -11.19 -0.08 6.01 16 29 O -0.50 -7.77 14.30 5.55 0.08 -7.69 16 30 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.13 2.21 5.26 -51.93 -0.27 1.93 16 38 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 41 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 43 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 46 H 0.41 3.11 8.81 -40.82 -0.36 2.76 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -33.92 372.29 -9.51 -43.43 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.64 Total: 4.02 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.48 Total: -8.84 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.57 Total: -31.23 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.55 Total: -29.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.92 -9.51 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188019058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.166 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds