Wall clock time and date at job start Tue Mar 31 2020 15:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 H 1.09010 * 109.46637 * 55.00544 * 3 2 1 5 5 C 1.50703 * 109.47108 * 175.00333 * 3 2 1 6 6 H 1.07995 * 119.99722 * 120.00233 * 5 3 2 7 7 C 1.37875 * 119.99601 * 300.00432 * 5 3 2 8 8 N 1.31513 * 120.00644 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47088 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47639 * 119.99761 * 9 7 5 12 12 H 1.48504 * 109.46996 * 240.00083 * 9 7 5 13 13 O 1.45197 * 109.47594 * 295.00553 * 3 2 1 14 14 C 1.34232 * 116.99868 * 90.00104 * 13 3 2 15 15 O 1.20817 * 120.00170 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99801 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47217 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47503 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.35337 * 54.82573 * 18 17 16 20 20 C 1.52878 * 109.41764 * 174.65582 * 18 17 16 21 21 C 1.50713 * 109.69880 * 168.25565 * 20 18 17 22 22 C 1.38152 * 119.92988 * 147.40231 * 21 20 18 23 23 C 1.38258 * 120.05639 * 179.16022 * 22 21 20 24 24 C 1.38307 * 120.11926 * 359.97438 * 23 22 21 25 25 C 1.38076 * 120.07982 * 0.27052 * 24 23 22 26 26 C 1.38739 * 120.08572 * 327.06276 * 21 20 18 27 27 N 1.39762 * 120.24301 * 1.18743 * 26 21 20 28 28 C 1.34425 * 120.67296 * 14.13859 * 27 26 21 29 29 O 1.21292 * 119.70238 * 185.89040 * 28 27 26 30 30 H 1.08997 * 109.47591 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46724 * 299.99299 * 1 2 3 33 33 H 1.09003 * 109.46724 * 240.00701 * 2 1 3 34 34 H 1.08997 * 109.47591 * 120.00445 * 2 1 3 35 35 H 0.97003 * 120.00175 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47733 * 59.99432 * 16 14 13 37 37 H 1.09002 * 109.46722 * 299.99326 * 16 14 13 38 38 H 1.09005 * 109.47105 * 59.99934 * 17 16 14 39 39 H 1.09002 * 109.47089 * 300.00099 * 17 16 14 40 40 H 1.09001 * 109.43543 * 288.34691 * 20 18 17 41 41 H 1.08997 * 109.43289 * 48.20906 * 20 18 17 42 42 H 1.08000 * 119.96978 * 359.12884 * 22 21 20 43 43 H 1.07994 * 119.94187 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.95969 * 180.26148 * 24 23 22 45 45 H 1.08011 * 120.03288 * 179.97438 * 25 24 23 46 46 H 0.97002 * 119.66181 * 194.15807 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8420 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0049 0.8812 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3991 1.6166 2.6100 12 1 6.4971 -0.5176 1.4626 13 8 1.6558 2.0918 -1.2406 14 6 0.4726 2.7256 -1.2557 15 8 -0.2192 2.7370 -0.2653 16 6 0.0068 3.4219 -2.5084 17 6 -1.3619 4.0587 -2.2590 18 6 -1.8346 4.7662 -3.5306 19 1 -1.8244 4.0608 -4.3615 20 6 -3.2569 5.2871 -3.3235 21 6 -3.6231 6.2241 -4.4457 22 6 -4.9312 6.2960 -4.8845 23 6 -5.2733 7.1673 -5.9020 24 6 -4.3078 7.9693 -6.4830 25 6 -2.9980 7.8980 -6.0520 26 6 -2.6499 7.0192 -5.0335 27 7 -1.3218 6.9379 -4.6059 28 6 -0.9101 5.9146 -3.8377 29 8 0.2164 5.9160 -3.3879 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8295 -0.0612 2.9498 36 1 -0.0722 2.6974 -3.3189 37 1 0.7237 4.1961 -2.7816 38 1 -1.2833 4.7832 -1.4484 39 1 -2.0786 3.2842 -1.9858 40 1 -3.9522 4.4478 -3.3099 41 1 -3.3135 5.8194 -2.3740 42 1 -5.6870 5.6708 -4.4326 43 1 -6.2964 7.2223 -6.2433 44 1 -4.5787 8.6519 -7.2747 45 1 -2.2445 8.5244 -6.5065 46 1 -0.6908 7.6272 -4.8660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188019058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:08 Heat of formation + Delta-G solvation = -136.053320 kcal Electronic energy + Delta-G solvation = -27914.891006 eV Core-core repulsion = 23960.700858 eV Total energy + Delta-G solvation = -3954.190148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20787 -41.28103 -39.77038 -37.79656 -36.37727 -36.15923 -35.48925 -33.51202 -33.13814 -30.64302 -30.30423 -29.25043 -26.35782 -25.18915 -24.66302 -23.62406 -23.09049 -22.11973 -21.11292 -20.07652 -18.88060 -18.82036 -18.47656 -18.25666 -17.38678 -17.05996 -16.99110 -16.36358 -16.25078 -16.01345 -15.33762 -15.12847 -14.85104 -14.80516 -14.51634 -14.35088 -14.27840 -13.57339 -13.52055 -13.36055 -13.33078 -13.22473 -13.09065 -13.03692 -12.81171 -12.53556 -12.33205 -12.16343 -12.15155 -12.04568 -11.83468 -11.75164 -11.69820 -11.41905 -11.20744 -10.81417 -10.75393 -10.52111 -9.70645 -8.96498 -8.28875 -6.45507 0.24742 0.44364 1.38851 1.39860 1.45379 1.50574 1.54188 1.99842 2.11192 2.42805 2.89280 2.99990 3.29403 3.56171 3.61402 3.87494 3.96526 4.06915 4.18507 4.25995 4.36783 4.37938 4.40830 4.42040 4.50676 4.57012 4.61934 4.68636 4.75360 4.80257 4.85770 5.01516 5.08538 5.09245 5.11770 5.20456 5.23508 5.27308 5.41651 5.51366 5.51519 5.66471 5.67981 5.74578 5.96207 6.00063 6.17419 6.20060 6.60003 6.95535 7.05689 7.27460 8.78113 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002252 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.023568 B =12432.879677 C =13237.110148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.061 0.939 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.268 1.268 13 O -0.370 6.370 14 C 0.446 3.554 15 O -0.546 6.546 16 C -0.123 4.123 17 C -0.079 4.079 18 C -0.096 4.096 19 H 0.132 0.868 20 C -0.069 4.069 21 C -0.134 4.134 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.094 4.094 25 C -0.159 4.159 26 C 0.138 3.862 27 N -0.658 5.658 28 C 0.516 3.484 29 O -0.553 6.553 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.271 0.729 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 13.345 -19.848 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.193 1.193 13 O -0.287 6.287 14 C 0.291 3.709 15 O -0.438 6.438 16 C -0.160 4.160 17 C -0.117 4.117 18 C -0.117 4.117 19 H 0.150 0.850 20 C -0.106 4.106 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.162 4.162 24 C -0.113 4.113 25 C -0.179 4.179 26 C 0.043 3.957 27 N -0.302 5.302 28 C 0.306 3.694 29 O -0.431 6.431 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.167 0.833 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.158 0.842 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -19.664 13.063 -19.027 30.321 hybrid contribution 1.464 0.364 0.583 1.618 sum -18.200 13.427 -18.444 29.184 Atomic orbital electron populations 1.21702 0.95958 1.00658 1.00235 1.21846 0.94794 0.97792 1.02241 1.20361 0.94437 0.89502 0.78789 0.97832 1.21376 0.90774 1.39874 1.06887 0.92093 1.25811 1.04329 0.93883 0.94311 1.70017 1.37320 1.37964 1.09828 0.85167 0.77675 0.78455 0.78291 1.19111 1.20041 1.19303 1.86473 1.36608 1.63215 1.42427 1.24462 0.79274 0.75793 0.91369 1.90555 1.55996 1.59562 1.37680 1.21861 1.00230 1.01286 0.92646 1.21177 0.94628 0.99934 0.95922 1.21283 0.94762 0.95053 1.00556 0.85006 1.20509 0.93949 0.99364 0.96812 1.19644 0.93880 1.00400 0.99703 1.21174 0.94413 0.98509 0.96395 1.21471 1.00883 0.96693 0.97149 1.21311 0.91751 0.98684 0.99526 1.21051 0.98648 1.00907 0.97300 1.17901 0.83006 0.98569 0.96273 1.43569 1.10401 1.25923 1.50258 1.21175 0.87915 0.84008 0.76342 1.90705 1.22631 1.78636 1.51168 0.94112 0.91824 0.94642 0.93639 0.89621 0.91994 0.86054 0.86145 0.92687 0.88704 0.86357 0.90239 0.83321 0.83493 0.83295 0.84155 0.74696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.57 71.98 0.62 -5.13 16 2 C -0.13 -6.73 5.49 30.59 0.17 -6.56 16 3 C 0.22 12.81 2.25 29.85 0.07 12.88 16 4 H 0.00 0.25 7.16 -2.38 -0.02 0.23 16 5 C -0.55 -33.09 8.90 25.60 0.23 -32.86 16 6 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 0.94 5.29 84.65 0.45 1.38 16 8 N -0.91 -53.92 11.29 21.45 0.24 -53.67 16 9 Si 0.98 44.74 29.54 68.60 2.03 46.77 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 O -0.37 -19.20 9.81 -51.43 -0.50 -19.70 16 14 C 0.45 19.86 6.41 71.24 0.46 20.31 16 15 O -0.55 -26.61 13.12 21.99 0.29 -26.32 16 16 C -0.12 -3.96 5.55 29.85 0.17 -3.80 16 17 C -0.08 -2.02 3.72 30.59 0.11 -1.91 16 18 C -0.10 -1.79 2.48 -11.61 -0.03 -1.82 16 19 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 20 C -0.07 -0.97 5.29 29.81 0.16 -0.81 16 21 C -0.13 -1.84 5.67 -19.76 -0.11 -1.95 16 22 C -0.09 -0.86 9.68 22.25 0.22 -0.64 16 23 C -0.14 -1.18 10.04 22.29 0.22 -0.96 16 24 C -0.09 -0.81 10.04 22.25 0.22 -0.58 16 25 C -0.16 -1.78 9.90 22.40 0.22 -1.56 16 26 C 0.14 2.07 6.53 38.17 0.25 2.32 16 27 N -0.66 -11.79 5.35 -304.21 -1.63 -13.42 16 28 C 0.52 12.11 7.44 87.68 0.65 12.76 16 29 O -0.55 -17.77 14.30 -3.07 -0.04 -17.81 16 30 H 0.04 1.72 6.06 -2.39 -0.01 1.71 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.03 1.68 7.80 -2.39 -0.02 1.66 16 33 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.12 4.25 5.26 -2.39 -0.01 4.24 16 38 H 0.05 1.66 8.10 -2.38 -0.02 1.64 16 39 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 40 H 0.12 1.08 8.06 -2.39 -0.02 1.06 16 41 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 42 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.15 0.53 8.06 -2.91 -0.02 0.50 16 44 H 0.15 0.55 8.06 -2.91 -0.02 0.53 16 45 H 0.14 1.09 8.06 -2.90 -0.02 1.07 16 46 H 0.41 6.35 8.81 -92.71 -0.82 5.54 16 Total: -1.00 -76.64 372.29 4.63 -72.01 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.19 Total: 21.08 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 4.07 Total: -8.93 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -1.39 Total: -67.09 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -0.26 Total: -63.84 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -76.64 4.63 -72.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188019058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.044 kcal (2) G-P(sol) polarization free energy of solvation -76.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds