Wall clock time and date at job start Tue Mar 31 2020 15:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 H 1.08996 * 109.46791 * 304.99782 * 3 2 1 5 5 C 1.50701 * 109.47039 * 185.00129 * 3 2 1 6 6 H 1.07997 * 120.00187 * 239.99678 * 5 3 2 7 7 C 1.37884 * 120.00063 * 59.99980 * 5 3 2 8 8 N 1.31509 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00078 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46789 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47414 * 119.99716 * 9 7 5 12 12 H 1.48496 * 109.47000 * 240.00347 * 9 7 5 13 13 O 1.45198 * 109.47177 * 64.99936 * 3 2 1 14 14 C 1.34224 * 117.00098 * 269.99912 * 13 3 2 15 15 O 1.20825 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00088 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47356 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47277 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.36210 * 54.83212 * 18 17 16 20 20 C 1.52882 * 109.41696 * 174.66760 * 18 17 16 21 21 C 1.50712 * 109.69012 * 168.29063 * 20 18 17 22 22 C 1.38154 * 119.94522 * 147.08544 * 21 20 18 23 23 C 1.38260 * 120.05776 * 179.52286 * 22 21 20 24 24 C 1.38302 * 120.12261 * 359.89373 * 23 22 21 25 25 C 1.38077 * 120.07940 * 0.29492 * 24 23 22 26 26 C 1.38743 * 120.07541 * 327.00283 * 21 20 18 27 27 N 1.39720 * 120.17551 * 0.96746 * 26 21 20 28 28 C 1.34424 * 120.70168 * 14.69261 * 27 26 21 29 29 O 1.21293 * 119.69866 * 185.61372 * 28 27 26 30 30 H 1.08996 * 109.46884 * 60.00116 * 1 2 3 31 31 H 1.08999 * 109.46547 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46961 * 299.99808 * 1 2 3 33 33 H 1.08997 * 109.47454 * 240.00227 * 2 1 3 34 34 H 1.08994 * 109.47594 * 119.99670 * 2 1 3 35 35 H 0.97002 * 119.99718 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47114 * 60.00385 * 16 14 13 37 37 H 1.09003 * 109.47505 * 300.00220 * 16 14 13 38 38 H 1.09007 * 109.46839 * 59.99996 * 17 16 14 39 39 H 1.08995 * 109.47267 * 300.00398 * 17 16 14 40 40 H 1.09007 * 109.43517 * 288.35743 * 20 18 17 41 41 H 1.08998 * 109.43828 * 48.22062 * 20 18 17 42 42 H 1.08004 * 119.97154 * 359.49896 * 22 21 20 43 43 H 1.08000 * 119.93917 * 179.89368 * 23 22 21 44 44 H 1.07994 * 119.95926 * 180.28091 * 24 23 22 45 45 H 1.08004 * 120.03768 * 180.02562 * 25 24 23 46 46 H 0.97002 * 119.63003 * 194.44016 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3813 10 1 6.5988 1.5454 -0.1937 11 1 6.4963 -0.5188 -1.4627 12 1 6.3999 1.6159 -2.6092 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2193 2.7370 0.2655 16 6 0.0069 3.4216 2.5087 17 6 -1.3612 4.0595 2.2591 18 6 -1.8338 4.7668 3.5307 19 1 -1.0722 5.4764 3.8539 20 6 -3.1357 5.5147 3.2424 21 6 -3.7569 5.9707 4.5376 22 6 -4.4719 7.1520 4.5812 23 6 -5.0511 7.5676 5.7659 24 6 -4.9184 6.8014 6.9096 25 6 -4.2017 5.6218 6.8730 26 6 -3.6129 5.2047 5.6854 27 7 -2.8751 4.0187 5.6503 28 6 -2.0608 3.7474 4.6158 29 8 -1.5076 2.6697 4.5530 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 3.8293 -0.0611 -2.9499 36 1 0.7238 4.1958 2.7820 37 1 -0.0720 2.6970 3.3191 38 1 -2.0784 3.2855 1.9854 39 1 -1.2819 4.7841 1.4488 40 1 -2.9249 6.3817 2.6162 41 1 -3.8271 4.8519 2.7221 42 1 -4.5782 7.7516 3.6892 43 1 -5.6083 8.4922 5.7982 44 1 -5.3758 7.1262 7.8324 45 1 -4.0988 5.0237 7.7665 46 1 -2.9487 3.3863 6.3821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188019082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:12 Heat of formation + Delta-G solvation = -116.708749 kcal Electronic energy + Delta-G solvation = -27949.375437 eV Core-core repulsion = 23996.024132 eV Total energy + Delta-G solvation = -3953.351305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45196 -39.53989 -39.00546 -36.07545 -35.58048 -35.16291 -33.40416 -32.46233 -31.26951 -29.98200 -29.45828 -27.22529 -25.32659 -23.94930 -23.11076 -23.06621 -22.12696 -20.40170 -19.45630 -19.14575 -18.22242 -17.53649 -16.77329 -16.54131 -16.43864 -15.83927 -15.57016 -15.16006 -15.02214 -14.71216 -14.38112 -14.30753 -13.89117 -13.78589 -13.29058 -12.84277 -12.82329 -12.73949 -12.44208 -12.23141 -11.91522 -11.67891 -11.38498 -11.33643 -11.23476 -11.16076 -11.06142 -11.02120 -10.99629 -10.88959 -10.54869 -10.21359 -9.86916 -9.68668 -9.39408 -9.24355 -9.22305 -8.70535 -8.39117 -8.37582 -6.12818 -4.19225 0.81089 0.90830 2.29098 2.69766 3.21897 3.26741 3.33381 3.38595 3.38914 3.76779 4.05406 4.26806 4.29266 4.39798 4.52173 4.64304 4.80378 4.91907 4.95469 5.07689 5.18876 5.24404 5.32299 5.37715 5.49014 5.53535 5.67628 5.73790 5.82536 5.98244 6.07209 6.11269 6.22913 6.28806 6.33087 6.33418 6.40582 6.55501 6.58814 6.85934 6.98396 7.07275 7.26758 7.38747 7.69289 7.76046 7.83017 8.06030 8.25245 8.75450 9.01576 9.45913 10.94020 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002172 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.242591 B =12886.471243 C =12955.521846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.061 3.939 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.358 6.358 14 C 0.454 3.546 15 O -0.525 6.525 16 C -0.134 4.134 17 C -0.086 4.086 18 C -0.105 4.105 19 H 0.112 0.888 20 C -0.074 4.074 21 C -0.122 4.122 22 C -0.082 4.082 23 C -0.144 4.144 24 C -0.091 4.091 25 C -0.156 4.156 26 C 0.164 3.836 27 N -0.666 5.666 28 C 0.522 3.478 29 O -0.505 6.505 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 14.417 17.391 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.064 0.936 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.141 4.141 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.274 6.274 14 C 0.298 3.702 15 O -0.416 6.416 16 C -0.172 4.172 17 C -0.124 4.124 18 C -0.126 4.126 19 H 0.129 0.871 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.163 4.163 24 C -0.109 4.109 25 C -0.177 4.177 26 C 0.068 3.932 27 N -0.310 5.310 28 C 0.310 3.690 29 O -0.379 6.379 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -17.581 13.742 16.665 27.851 hybrid contribution 0.778 -0.329 0.226 0.874 sum -16.803 13.413 16.891 27.341 Atomic orbital electron populations 1.21850 0.98374 0.98883 1.00806 1.22003 0.92668 0.99441 1.03213 1.20634 0.94887 0.88808 0.78927 0.93612 1.21109 0.89858 1.38612 1.06086 0.91352 1.24896 0.99170 0.94870 0.95144 1.69908 1.35198 1.38047 1.09486 0.86245 0.84062 0.77839 0.78142 1.19510 1.20755 1.20811 1.86472 1.34545 1.62512 1.43862 1.23305 0.80583 0.76860 0.89474 1.90577 1.55568 1.59175 1.36246 1.21718 0.96746 1.01943 0.96749 1.21243 0.96524 1.00192 0.94446 1.21344 0.99553 0.96748 0.94962 0.87062 1.20522 0.94980 1.01102 0.94497 1.19552 1.02372 0.96635 0.93956 1.20908 0.95941 0.94786 0.98414 1.21109 1.01692 1.00628 0.92893 1.20962 0.97544 0.93817 0.98604 1.20798 1.02108 0.98643 0.96110 1.17649 0.94381 0.87045 0.94169 1.43667 1.42955 1.20305 1.24065 1.20847 0.77340 0.88501 0.82297 1.90721 1.47103 1.24213 1.75822 0.92904 0.94970 0.94773 0.87464 0.94063 0.92534 0.88976 0.85407 0.90421 0.89773 0.88697 0.89489 0.85233 0.85734 0.85565 0.85493 0.75234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.57 37.16 0.32 -2.99 16 2 C -0.14 -3.53 5.49 -26.73 -0.15 -3.68 16 3 C 0.22 6.09 2.25 -27.88 -0.06 6.03 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.97 8.90 -34.44 -0.31 -15.28 16 6 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.67 11.29 55.43 0.63 -25.05 16 9 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 O -0.36 -8.97 9.81 -39.24 -0.38 -9.35 16 14 C 0.45 9.85 6.41 36.00 0.23 10.08 16 15 O -0.52 -12.36 13.12 -18.75 -0.25 -12.60 16 16 C -0.13 -2.15 5.55 -27.88 -0.15 -2.31 16 17 C -0.09 -1.12 3.72 -26.73 -0.10 -1.22 16 18 C -0.10 -1.04 2.48 -91.88 -0.23 -1.27 16 19 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 20 C -0.07 -0.58 5.29 -27.94 -0.15 -0.73 16 21 C -0.12 -0.96 5.67 -104.46 -0.59 -1.55 16 22 C -0.08 -0.53 9.68 -39.60 -0.38 -0.91 16 23 C -0.14 -0.83 10.04 -39.55 -0.40 -1.23 16 24 C -0.09 -0.52 10.04 -39.62 -0.40 -0.92 16 25 C -0.16 -1.02 9.90 -39.37 -0.39 -1.41 16 26 C 0.16 1.34 6.53 -83.81 -0.55 0.79 16 27 N -0.67 -5.99 5.35 -10.03 -0.05 -6.04 16 28 C 0.52 6.03 7.44 -11.19 -0.08 5.95 16 29 O -0.50 -7.66 14.30 5.55 0.08 -7.58 16 30 H 0.05 1.27 7.80 -51.93 -0.40 0.87 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.78 6.06 -51.93 -0.31 0.46 16 33 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.13 2.16 5.26 -51.93 -0.27 1.89 16 38 H 0.08 1.12 8.10 -51.92 -0.42 0.70 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.09 0.58 8.06 -51.92 -0.42 0.16 16 41 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 46 H 0.41 3.06 8.81 -40.82 -0.36 2.70 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -33.79 372.28 -9.51 -43.30 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.64 Total: 4.25 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.48 Total: -9.02 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.57 Total: -31.09 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.55 Total: -29.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.79 -9.51 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188019082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.409 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds