Wall clock time and date at job start Tue Mar 31 2020 15:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 H 1.08996 * 109.46791 * 304.99782 * 3 2 1 5 5 C 1.50701 * 109.47039 * 185.00129 * 3 2 1 6 6 H 1.07997 * 120.00187 * 239.99678 * 5 3 2 7 7 C 1.37884 * 120.00063 * 59.99980 * 5 3 2 8 8 N 1.31509 * 119.99753 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00078 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46789 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47414 * 119.99716 * 9 7 5 12 12 H 1.48496 * 109.47000 * 240.00347 * 9 7 5 13 13 O 1.45198 * 109.47177 * 64.99936 * 3 2 1 14 14 C 1.34224 * 117.00098 * 269.99912 * 13 3 2 15 15 O 1.20825 * 119.99960 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00088 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47356 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47277 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.36210 * 54.83212 * 18 17 16 20 20 C 1.52882 * 109.41696 * 174.66760 * 18 17 16 21 21 C 1.50712 * 109.69012 * 168.29063 * 20 18 17 22 22 C 1.38154 * 119.94522 * 147.08544 * 21 20 18 23 23 C 1.38260 * 120.05776 * 179.52286 * 22 21 20 24 24 C 1.38302 * 120.12261 * 359.89373 * 23 22 21 25 25 C 1.38077 * 120.07940 * 0.29492 * 24 23 22 26 26 C 1.38743 * 120.07541 * 327.00283 * 21 20 18 27 27 N 1.39720 * 120.17551 * 0.96746 * 26 21 20 28 28 C 1.34424 * 120.70168 * 14.69261 * 27 26 21 29 29 O 1.21293 * 119.69866 * 185.61372 * 28 27 26 30 30 H 1.08996 * 109.46884 * 60.00116 * 1 2 3 31 31 H 1.08999 * 109.46547 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46961 * 299.99808 * 1 2 3 33 33 H 1.08997 * 109.47454 * 240.00227 * 2 1 3 34 34 H 1.08994 * 109.47594 * 119.99670 * 2 1 3 35 35 H 0.97002 * 119.99718 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47114 * 60.00385 * 16 14 13 37 37 H 1.09003 * 109.47505 * 300.00220 * 16 14 13 38 38 H 1.09007 * 109.46839 * 59.99996 * 17 16 14 39 39 H 1.08995 * 109.47267 * 300.00398 * 17 16 14 40 40 H 1.09007 * 109.43517 * 288.35743 * 20 18 17 41 41 H 1.08998 * 109.43828 * 48.22062 * 20 18 17 42 42 H 1.08004 * 119.97154 * 359.49896 * 22 21 20 43 43 H 1.08000 * 119.93917 * 179.89368 * 23 22 21 44 44 H 1.07994 * 119.95926 * 180.28091 * 24 23 22 45 45 H 1.08004 * 120.03768 * 180.02562 * 25 24 23 46 46 H 0.97002 * 119.63003 * 194.44016 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3813 10 1 6.5988 1.5454 -0.1937 11 1 6.4963 -0.5188 -1.4627 12 1 6.3999 1.6159 -2.6092 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2193 2.7370 0.2655 16 6 0.0069 3.4216 2.5087 17 6 -1.3612 4.0595 2.2591 18 6 -1.8338 4.7668 3.5307 19 1 -1.0722 5.4764 3.8539 20 6 -3.1357 5.5147 3.2424 21 6 -3.7569 5.9707 4.5376 22 6 -4.4719 7.1520 4.5812 23 6 -5.0511 7.5676 5.7659 24 6 -4.9184 6.8014 6.9096 25 6 -4.2017 5.6218 6.8730 26 6 -3.6129 5.2047 5.6854 27 7 -2.8751 4.0187 5.6503 28 6 -2.0608 3.7474 4.6158 29 8 -1.5076 2.6697 4.5530 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 3.8293 -0.0611 -2.9499 36 1 0.7238 4.1958 2.7820 37 1 -0.0720 2.6970 3.3191 38 1 -2.0784 3.2855 1.9854 39 1 -1.2819 4.7841 1.4488 40 1 -2.9249 6.3817 2.6162 41 1 -3.8271 4.8519 2.7221 42 1 -4.5782 7.7516 3.6892 43 1 -5.6083 8.4922 5.7982 44 1 -5.3758 7.1262 7.8324 45 1 -4.0988 5.0237 7.7665 46 1 -2.9487 3.3863 6.3821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188019082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:11 Heat of formation + Delta-G solvation = -135.879391 kcal Electronic energy + Delta-G solvation = -27950.206739 eV Core-core repulsion = 23996.024132 eV Total energy + Delta-G solvation = -3954.182606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20781 -41.28126 -39.76631 -37.79809 -36.37450 -36.15923 -35.48984 -33.52110 -33.14628 -30.64342 -30.30495 -29.25693 -26.35794 -25.19682 -24.66412 -23.62579 -23.09724 -22.13303 -21.11701 -20.07763 -18.89983 -18.81001 -18.40047 -18.30119 -17.44780 -17.08193 -16.89146 -16.36698 -16.26530 -16.04104 -15.33628 -15.00859 -14.93322 -14.79618 -14.66473 -14.36131 -14.11409 -13.71871 -13.42482 -13.39474 -13.35838 -13.21131 -13.09730 -13.03066 -12.80890 -12.55680 -12.32889 -12.16127 -12.13731 -12.05120 -11.83449 -11.77621 -11.69193 -11.42660 -11.21146 -10.81686 -10.74024 -10.53100 -9.70711 -8.96474 -8.27900 -6.44727 0.24708 0.44294 1.40403 1.41418 1.45565 1.50843 1.55559 2.00056 2.11186 2.43780 2.89212 3.01116 3.29382 3.56098 3.61272 3.87498 3.96294 4.07335 4.17485 4.26568 4.33522 4.36965 4.37733 4.41041 4.50760 4.55537 4.61220 4.67941 4.75516 4.79780 4.84680 5.01284 5.05952 5.08275 5.11296 5.20153 5.20462 5.27228 5.38114 5.51401 5.51883 5.66073 5.66446 5.74729 5.96089 5.99037 6.17306 6.20150 6.60907 6.95737 7.05844 7.28066 8.79285 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028852 B = 0.002172 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.242591 B =12886.471243 C =12955.521846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.274 1.274 13 O -0.370 6.370 14 C 0.446 3.554 15 O -0.546 6.546 16 C -0.123 4.123 17 C -0.079 4.079 18 C -0.096 4.096 19 H 0.131 0.869 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.094 4.094 25 C -0.158 4.158 26 C 0.138 3.862 27 N -0.657 5.657 28 C 0.517 3.483 29 O -0.552 6.552 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.271 0.729 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.369 16.302 18.800 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.026 0.974 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.199 1.199 13 O -0.287 6.287 14 C 0.291 3.709 15 O -0.438 6.438 16 C -0.160 4.160 17 C -0.117 4.117 18 C -0.117 4.117 19 H 0.148 0.852 20 C -0.106 4.106 21 C -0.136 4.136 22 C -0.106 4.106 23 C -0.162 4.162 24 C -0.113 4.113 25 C -0.178 4.178 26 C 0.043 3.957 27 N -0.301 5.301 28 C 0.307 3.693 29 O -0.430 6.430 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.159 0.841 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -18.167 15.666 18.106 30.055 hybrid contribution 0.797 -0.825 -0.157 1.158 sum -17.369 14.841 17.949 29.054 Atomic orbital electron populations 1.21695 0.96367 1.00458 1.00017 1.21865 0.94410 0.98359 1.02137 1.20353 0.94578 0.89218 0.78856 0.97408 1.21369 0.90561 1.39944 1.06864 0.91794 1.25841 1.04407 0.93841 0.94334 1.70022 1.37393 1.37955 1.09871 0.85137 0.77529 0.78333 0.78404 1.18884 1.19674 1.19896 1.86472 1.36536 1.63215 1.42488 1.24460 0.79209 0.76155 0.91071 1.90556 1.55749 1.59840 1.37657 1.21865 0.98872 1.02066 0.93232 1.21172 0.94178 0.99831 0.96473 1.21279 1.01259 0.96389 0.92785 0.85183 1.20506 0.93580 1.01446 0.95116 1.19647 1.03058 0.97307 0.93618 1.21173 0.95470 0.94357 0.99559 1.21469 1.00957 1.01243 0.92533 1.21311 0.96986 0.93280 0.99696 1.21053 1.01573 0.99135 0.96081 1.17887 0.95568 0.87024 0.95252 1.43543 1.42247 1.20840 1.23459 1.21127 0.77091 0.88139 0.82970 1.90694 1.49267 1.26016 1.77007 0.94305 0.92140 0.94831 0.89407 0.94010 0.92013 0.86366 0.85831 0.92406 0.88998 0.86527 0.90153 0.83407 0.83526 0.83281 0.84094 0.74656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.57 71.98 0.62 -5.47 16 2 C -0.13 -6.97 5.49 30.60 0.17 -6.81 16 3 C 0.22 12.84 2.25 29.85 0.07 12.90 16 4 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 5 C -0.55 -32.55 8.90 25.60 0.23 -32.32 16 6 H 0.06 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.91 -53.75 11.29 21.45 0.24 -53.51 16 9 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 O -0.37 -19.18 9.81 -51.36 -0.50 -19.69 16 14 C 0.45 19.87 6.41 71.23 0.46 20.33 16 15 O -0.55 -26.63 13.12 21.97 0.29 -26.35 16 16 C -0.12 -3.97 5.55 29.85 0.17 -3.81 16 17 C -0.08 -2.03 3.72 30.59 0.11 -1.91 16 18 C -0.10 -1.81 2.48 -11.61 -0.03 -1.84 16 19 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.07 -0.98 5.29 29.81 0.16 -0.82 16 21 C -0.13 -1.84 5.67 -19.76 -0.11 -1.96 16 22 C -0.09 -0.88 9.68 22.25 0.22 -0.66 16 23 C -0.14 -1.19 10.04 22.29 0.22 -0.97 16 24 C -0.09 -0.80 10.04 22.25 0.22 -0.58 16 25 C -0.16 -1.75 9.90 22.40 0.22 -1.52 16 26 C 0.14 2.05 6.53 38.18 0.25 2.30 16 27 N -0.66 -11.50 5.35 -304.24 -1.63 -13.13 16 28 C 0.52 11.90 7.44 87.68 0.65 12.55 16 29 O -0.55 -17.20 14.30 -3.07 -0.04 -17.25 16 30 H 0.04 1.91 7.80 -2.39 -0.02 1.90 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.03 1.56 6.06 -2.39 -0.01 1.55 16 33 H 0.09 5.07 5.95 -2.39 -0.01 5.06 16 34 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.12 4.27 5.26 -2.39 -0.01 4.25 16 38 H 0.06 1.72 8.10 -2.38 -0.02 1.70 16 39 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 40 H 0.12 1.12 8.06 -2.38 -0.02 1.10 16 41 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 42 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 43 H 0.15 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.41 6.13 8.81 -92.71 -0.82 5.31 16 Total: -1.00 -75.49 372.28 4.63 -70.86 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.19 Total: 22.18 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.07 Total: -9.26 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.39 Total: -66.64 kcal Atomic # 8 Polarization: -63.02 SS G_CDS: -0.26 Total: -63.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.49 4.63 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188019082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.021 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds