Wall clock time and date at job start Tue Mar 31 2020 16:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 H 1.08996 * 109.47335 * 54.99975 * 3 2 1 5 5 C 1.50701 * 109.47005 * 175.00333 * 3 2 1 6 6 H 1.07996 * 120.00006 * 120.00384 * 5 3 2 7 7 C 1.37876 * 119.99943 * 299.99568 * 5 3 2 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47291 * 90.00185 * 9 7 5 11 11 H 1.48502 * 109.47344 * 210.00354 * 9 7 5 12 12 H 1.48503 * 109.47189 * 330.00161 * 9 7 5 13 13 O 1.45199 * 109.47393 * 295.00304 * 3 2 1 14 14 C 1.34228 * 117.00418 * 89.99686 * 13 3 2 15 15 O 1.20830 * 119.99561 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00248 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.85645 * 62.33878 * 16 14 13 18 18 C 1.54625 * 110.97263 * 298.54769 * 16 14 13 19 19 C 1.51279 * 104.19746 * 217.08185 * 18 16 14 20 20 O 1.21279 * 124.94069 * 196.27299 * 19 18 16 21 21 N 1.34416 * 110.11594 * 16.25133 * 19 18 16 22 22 C 1.46501 * 124.35060 * 180.40049 * 21 19 18 23 23 C 1.50706 * 109.46739 * 90.02974 * 22 21 19 24 24 C 1.38228 * 119.99983 * 270.21443 * 23 22 21 25 25 C 1.38238 * 120.00110 * 180.21781 * 24 23 22 26 26 C 1.38234 * 119.99675 * 359.52133 * 25 24 23 27 27 C 1.38235 * 120.00220 * 0.28720 * 26 25 24 28 28 C 1.38234 * 119.99892 * 89.99663 * 23 22 21 29 29 C 1.46762 * 111.29990 * 0.67534 * 21 19 18 30 30 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46880 * 299.99907 * 1 2 3 32 32 H 1.08999 * 109.47097 * 59.99854 * 1 2 3 33 33 H 1.09001 * 109.46880 * 240.00093 * 2 1 3 34 34 H 1.08991 * 109.47429 * 120.00203 * 2 1 3 35 35 H 0.96996 * 120.00009 * 179.97438 * 8 7 5 36 36 H 1.09009 * 110.48477 * 98.40648 * 18 16 14 37 37 H 1.09003 * 110.59775 * 335.82109 * 18 16 14 38 38 H 1.08998 * 109.47290 * 330.03340 * 22 21 19 39 39 H 1.08992 * 109.47277 * 210.02432 * 22 21 19 40 40 H 1.08004 * 120.00281 * 0.02562 * 24 23 22 41 41 H 1.08002 * 120.00519 * 179.80752 * 25 24 23 42 42 H 1.07999 * 120.00009 * 180.25939 * 26 25 24 43 43 H 1.07996 * 120.00471 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00324 * 0.02562 * 28 23 22 45 45 H 1.08999 * 110.24773 * 101.71844 * 29 21 19 46 46 H 1.08998 * 110.24904 * 223.71442 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.4417 2.1142 2.0848 11 1 6.4396 -0.3098 2.1548 12 1 6.6135 0.8416 0.0277 13 8 1.6558 2.0917 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2189 2.7377 -0.2652 16 6 0.0069 3.4217 -2.5086 17 1 -0.1195 2.7096 -3.3242 18 6 0.9820 4.5532 -2.9081 19 6 0.0828 5.6475 -3.4396 20 8 0.4545 6.5879 -4.1092 21 7 -1.1880 5.4257 -3.0621 22 6 -2.3176 6.2896 -3.4139 23 6 -2.9222 5.8219 -4.7127 24 6 -2.4566 6.3255 -5.9128 25 6 -3.0142 5.8999 -7.1039 26 6 -4.0307 4.9632 -7.0954 27 6 -4.4938 4.4566 -5.8955 28 6 -3.9394 4.8859 -4.7041 29 6 -1.2975 4.2103 -2.2467 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0617 2.9494 36 1 1.6661 4.2108 -3.6847 37 1 1.5382 4.9048 -2.0390 38 1 -1.9692 7.3165 -3.5243 39 1 -3.0693 6.2437 -2.6260 40 1 -1.6591 7.0539 -5.9197 41 1 -2.6525 6.2957 -8.0415 42 1 -4.4635 4.6275 -8.0262 43 1 -5.2882 3.7251 -5.8887 44 1 -4.3012 4.4900 -3.7666 45 1 -1.3790 4.4702 -1.1913 46 1 -2.1611 3.6231 -2.5590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188058574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:09 Heat of formation + Delta-G solvation = -100.895765 kcal Electronic energy + Delta-G solvation = -28283.982105 eV Core-core repulsion = 24331.316503 eV Total energy + Delta-G solvation = -3952.665602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90920 -39.64541 -39.05795 -36.60169 -35.73094 -33.97925 -33.49158 -31.46039 -31.12814 -30.85944 -27.82081 -27.41378 -26.51085 -23.96495 -22.98976 -22.68861 -21.76688 -20.58364 -19.57502 -19.39443 -17.61535 -17.14254 -16.87075 -16.60873 -16.20535 -15.71491 -15.50671 -15.24088 -14.95929 -14.75445 -14.31420 -13.92002 -13.66940 -13.64037 -13.50604 -12.99354 -12.87461 -12.86451 -12.69560 -12.28110 -12.17682 -11.69424 -11.55543 -11.45886 -11.43548 -11.24754 -11.20859 -11.17312 -10.98009 -10.72641 -10.32882 -10.07615 -9.84581 -9.64948 -9.43799 -9.15016 -9.09530 -8.88441 -8.82992 -8.50645 -6.23420 -4.30695 1.01769 1.17478 2.51348 2.78121 2.82692 3.21967 3.27695 3.30730 3.46104 3.65185 4.19706 4.27691 4.35845 4.51947 4.60651 4.76504 4.81965 4.87653 4.94476 5.02501 5.09007 5.22857 5.34811 5.40092 5.40512 5.54147 5.61600 5.73114 5.80642 5.82907 5.88212 6.16009 6.21108 6.22322 6.27732 6.29649 6.36764 6.38617 6.75441 6.79132 6.88274 6.95138 7.09264 7.16804 7.55945 7.67045 7.86228 8.06373 8.09286 8.51933 8.81299 9.34917 10.83275 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.002612 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.256330 B =10718.506603 C =11413.915049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.465 3.535 15 O -0.511 6.511 16 C -0.098 4.098 17 H 0.122 0.878 18 C -0.141 4.141 19 C 0.524 3.476 20 O -0.530 6.530 21 N -0.615 5.615 22 C 0.166 3.834 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.105 4.105 29 C 0.116 3.884 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.267 0.733 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 7.838 -13.664 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.306 3.694 15 O -0.401 6.401 16 C -0.118 4.118 17 H 0.140 0.860 18 C -0.181 4.181 19 C 0.312 3.688 20 O -0.406 6.406 21 N -0.349 5.349 22 C 0.045 3.955 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.123 4.123 29 C -0.006 4.006 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.113 0.887 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.676 8.259 -13.507 21.588 hybrid contribution 0.786 -0.329 0.223 0.881 sum -13.889 7.931 -13.284 20.791 Atomic orbital electron populations 1.21860 0.98367 0.99084 1.00662 1.22029 0.92632 0.99323 1.03477 1.20727 0.95109 0.88781 0.78430 0.93422 1.21033 0.89605 1.39099 1.06298 0.91257 1.24878 0.99262 0.94693 0.95061 1.69881 1.35439 1.37740 1.09480 0.86288 0.83839 0.77725 0.78405 1.20386 1.20944 1.19552 1.86482 1.33643 1.62064 1.44328 1.22616 0.81217 0.77023 0.88510 1.90627 1.55518 1.58484 1.35472 1.21876 0.95603 0.97479 0.96825 0.86000 1.22301 0.97868 0.93314 1.04607 1.20879 0.83011 0.86273 0.78664 1.90699 1.78160 1.32845 1.38932 1.48333 1.07444 1.26743 1.52392 1.20257 0.87724 0.94141 0.93420 1.20253 0.97027 0.98294 0.95521 1.21196 0.98835 0.99570 0.91894 1.21182 0.96947 0.97897 0.98119 1.21192 0.97151 0.97149 0.98060 1.21144 1.00304 1.00238 0.92537 1.21084 0.96251 0.96611 0.98364 1.22068 0.96997 0.84756 0.96821 0.94768 0.92781 0.95016 0.93902 0.87278 0.92343 0.86648 0.86789 0.88975 0.89198 0.85614 0.86070 0.86181 0.86026 0.85987 0.88733 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.57 37.16 0.32 -2.60 16 2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.37 16 3 C 0.22 5.57 2.25 -27.88 -0.06 5.51 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.05 8.90 -34.44 -0.31 -14.36 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.35 11.29 55.43 0.63 -23.73 16 9 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 O -0.35 -7.59 9.79 -39.25 -0.38 -7.98 16 14 C 0.46 8.48 5.64 36.00 0.20 8.68 16 15 O -0.51 -10.38 12.71 -18.75 -0.24 -10.62 16 16 C -0.10 -1.29 3.67 -90.05 -0.33 -1.62 16 17 H 0.12 1.39 8.14 -51.92 -0.42 0.96 16 18 C -0.14 -1.85 6.39 -26.74 -0.17 -2.02 16 19 C 0.52 7.24 8.02 -10.86 -0.09 7.15 16 20 O -0.53 -8.79 17.59 5.56 0.10 -8.69 16 21 N -0.62 -7.10 2.91 -173.67 -0.51 -7.60 16 22 C 0.17 1.60 6.06 -5.19 -0.03 1.56 16 23 C -0.11 -1.08 5.46 -104.62 -0.57 -1.65 16 24 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 28 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 29 C 0.12 1.32 6.65 -3.03 -0.02 1.30 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.16 7.80 -51.93 -0.40 0.76 16 32 H 0.03 0.61 6.06 -51.93 -0.31 0.29 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.11 1.59 7.89 -51.93 -0.41 1.18 16 38 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 39 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.09 1.18 7.07 -51.93 -0.37 0.81 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -30.92 382.09 -9.71 -40.63 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.78 Total: 3.55 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.26 Total: -6.87 kcal Atomic # 7 Polarization: -31.45 SS G_CDS: 0.12 Total: -31.33 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.53 Total: -27.29 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.92 -9.71 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188058574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.267 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds