Wall clock time and date at job start Tue Mar 31 2020 16:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46995 * 2 1 4 4 H 1.08996 * 109.47335 * 54.99975 * 3 2 1 5 5 C 1.50701 * 109.47005 * 175.00333 * 3 2 1 6 6 H 1.07996 * 120.00006 * 120.00384 * 5 3 2 7 7 C 1.37876 * 119.99943 * 299.99568 * 5 3 2 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47291 * 90.00185 * 9 7 5 11 11 H 1.48502 * 109.47344 * 210.00354 * 9 7 5 12 12 H 1.48503 * 109.47189 * 330.00161 * 9 7 5 13 13 O 1.45199 * 109.47393 * 295.00304 * 3 2 1 14 14 C 1.34228 * 117.00418 * 89.99686 * 13 3 2 15 15 O 1.20830 * 119.99561 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00248 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.85645 * 62.33878 * 16 14 13 18 18 C 1.54625 * 110.97263 * 298.54769 * 16 14 13 19 19 C 1.51279 * 104.19746 * 217.08185 * 18 16 14 20 20 O 1.21279 * 124.94069 * 196.27299 * 19 18 16 21 21 N 1.34416 * 110.11594 * 16.25133 * 19 18 16 22 22 C 1.46501 * 124.35060 * 180.40049 * 21 19 18 23 23 C 1.50706 * 109.46739 * 90.02974 * 22 21 19 24 24 C 1.38228 * 119.99983 * 270.21443 * 23 22 21 25 25 C 1.38238 * 120.00110 * 180.21781 * 24 23 22 26 26 C 1.38234 * 119.99675 * 359.52133 * 25 24 23 27 27 C 1.38235 * 120.00220 * 0.28720 * 26 25 24 28 28 C 1.38234 * 119.99892 * 89.99663 * 23 22 21 29 29 C 1.46762 * 111.29990 * 0.67534 * 21 19 18 30 30 H 1.09003 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46880 * 299.99907 * 1 2 3 32 32 H 1.08999 * 109.47097 * 59.99854 * 1 2 3 33 33 H 1.09001 * 109.46880 * 240.00093 * 2 1 3 34 34 H 1.08991 * 109.47429 * 120.00203 * 2 1 3 35 35 H 0.96996 * 120.00009 * 179.97438 * 8 7 5 36 36 H 1.09009 * 110.48477 * 98.40648 * 18 16 14 37 37 H 1.09003 * 110.59775 * 335.82109 * 18 16 14 38 38 H 1.08998 * 109.47290 * 330.03340 * 22 21 19 39 39 H 1.08992 * 109.47277 * 210.02432 * 22 21 19 40 40 H 1.08004 * 120.00281 * 0.02562 * 24 23 22 41 41 H 1.08002 * 120.00519 * 179.80752 * 25 24 23 42 42 H 1.07999 * 120.00009 * 180.25939 * 26 25 24 43 43 H 1.07996 * 120.00471 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00324 * 0.02562 * 28 23 22 45 45 H 1.08999 * 110.24773 * 101.71844 * 29 21 19 46 46 H 1.08998 * 110.24904 * 223.71442 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.4417 2.1142 2.0848 11 1 6.4396 -0.3098 2.1548 12 1 6.6135 0.8416 0.0277 13 8 1.6558 2.0917 -1.2406 14 6 0.4726 2.7255 -1.2559 15 8 -0.2189 2.7377 -0.2652 16 6 0.0069 3.4217 -2.5086 17 1 -0.1195 2.7096 -3.3242 18 6 0.9820 4.5532 -2.9081 19 6 0.0828 5.6475 -3.4396 20 8 0.4545 6.5879 -4.1092 21 7 -1.1880 5.4257 -3.0621 22 6 -2.3176 6.2896 -3.4139 23 6 -2.9222 5.8219 -4.7127 24 6 -2.4566 6.3255 -5.9128 25 6 -3.0142 5.8999 -7.1039 26 6 -4.0307 4.9632 -7.0954 27 6 -4.4938 4.4566 -5.8955 28 6 -3.9394 4.8859 -4.7041 29 6 -1.2975 4.2103 -2.2467 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8294 -0.0617 2.9494 36 1 1.6661 4.2108 -3.6847 37 1 1.5382 4.9048 -2.0390 38 1 -1.9692 7.3165 -3.5243 39 1 -3.0693 6.2437 -2.6260 40 1 -1.6591 7.0539 -5.9197 41 1 -2.6525 6.2957 -8.0415 42 1 -4.4635 4.6275 -8.0262 43 1 -5.2882 3.7251 -5.8887 44 1 -4.3012 4.4900 -3.7666 45 1 -1.3790 4.4702 -1.1913 46 1 -2.1611 3.6231 -2.5590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188058574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:08 Heat of formation + Delta-G solvation = -116.005898 kcal Electronic energy + Delta-G solvation = -28284.637329 eV Core-core repulsion = 24331.316503 eV Total energy + Delta-G solvation = -3953.320827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08118 -40.97730 -39.87983 -37.98912 -37.16790 -35.51919 -34.77415 -33.29971 -31.78703 -31.75844 -29.36741 -28.80396 -27.42418 -25.51470 -24.46746 -23.43528 -22.50435 -22.18251 -21.08684 -20.50815 -19.04777 -18.46600 -18.12927 -17.88691 -17.44407 -16.92952 -16.74031 -16.47033 -16.15294 -15.79073 -15.60394 -15.05184 -14.90269 -14.72244 -14.47741 -14.37650 -14.25345 -13.86008 -13.69477 -13.46057 -13.34443 -13.26866 -13.08175 -13.01189 -12.82457 -12.61362 -12.52330 -12.44180 -12.13158 -12.11575 -11.85391 -11.71161 -11.45993 -11.32474 -10.95239 -10.78783 -10.50231 -9.90857 -9.81474 -9.68032 -8.26063 -6.41740 0.33153 0.50719 1.30667 1.42994 1.43342 1.43780 1.54876 1.77740 2.11236 2.41777 2.95070 3.04043 3.13358 3.30982 3.72407 3.79266 3.84177 3.92253 4.14229 4.16150 4.27654 4.29698 4.42743 4.45349 4.46925 4.52662 4.58036 4.62047 4.69409 4.72272 4.78995 4.85656 4.88129 5.08880 5.14470 5.16127 5.25823 5.39351 5.43843 5.54305 5.56755 5.62826 5.64458 5.71498 5.96007 6.01536 6.11163 6.16041 6.62690 6.97637 7.01906 7.29707 8.80276 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.002612 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.256330 B =10718.506603 C =11413.915049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.226 3.774 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.975 3.025 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.264 1.264 13 O -0.358 6.358 14 C 0.462 3.538 15 O -0.531 6.531 16 C -0.085 4.085 17 H 0.151 0.849 18 C -0.140 4.140 19 C 0.522 3.478 20 O -0.563 6.563 21 N -0.606 5.606 22 C 0.163 3.837 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.134 4.134 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.108 4.108 29 C 0.122 3.878 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.270 0.730 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 7.066 -14.864 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.798 3.202 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.189 1.189 13 O -0.274 6.274 14 C 0.306 3.694 15 O -0.422 6.422 16 C -0.105 4.105 17 H 0.168 0.832 18 C -0.180 4.180 19 C 0.310 3.690 20 O -0.442 6.442 21 N -0.338 5.338 22 C 0.043 3.957 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.152 4.152 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.126 4.126 29 C 0.000 4.000 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.104 0.896 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.981 7.490 -14.710 22.975 hybrid contribution 1.091 -0.042 0.580 1.237 sum -14.890 7.448 -14.130 21.836 Atomic orbital electron populations 1.21717 0.95919 1.00671 1.00398 1.21871 0.94793 0.98010 1.02275 1.20367 0.94301 0.89369 0.78629 0.97164 1.21340 0.90814 1.39701 1.06713 0.91670 1.25717 1.03775 0.94042 0.94545 1.69999 1.37239 1.38006 1.09853 0.85300 0.78337 0.77900 0.78619 1.20001 1.20171 1.18850 1.86464 1.35700 1.62773 1.42509 1.23510 0.79793 0.76211 0.89929 1.90622 1.55730 1.59033 1.36809 1.21926 0.96212 0.97608 0.94715 0.83173 1.22285 0.98048 0.93225 1.04436 1.20914 0.83807 0.85884 0.78389 1.90684 1.78803 1.34121 1.40603 1.48375 1.07258 1.26763 1.51409 1.20432 0.87498 0.93295 0.94498 1.20261 0.97748 0.99024 0.95023 1.21224 0.99187 1.00122 0.92987 1.21390 0.97325 0.98273 0.98185 1.21505 0.96620 0.96525 0.99257 1.21488 1.00527 1.00302 0.92262 1.21328 0.95686 0.96060 0.99531 1.22090 0.96915 0.84604 0.96405 0.92207 0.94396 0.93817 0.93597 0.89819 0.92111 0.85633 0.88001 0.89867 0.86586 0.87238 0.85014 0.84081 0.83814 0.84080 0.89633 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.57 71.98 0.62 -4.59 16 2 C -0.13 -6.25 5.49 30.59 0.17 -6.08 16 3 C 0.23 11.63 2.25 29.85 0.07 11.69 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 5 C -0.55 -30.01 8.90 25.60 0.23 -29.78 16 6 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -50.92 11.29 21.45 0.24 -50.68 16 9 Si 0.97 42.19 29.54 68.60 2.03 44.21 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 13 O -0.36 -15.62 9.79 -51.40 -0.50 -16.13 16 14 C 0.46 16.58 5.64 71.23 0.40 16.99 16 15 O -0.53 -21.50 12.71 21.95 0.28 -21.22 16 16 C -0.09 -2.09 3.67 -10.42 -0.04 -2.13 16 17 H 0.15 2.92 8.14 -2.38 -0.02 2.90 16 18 C -0.14 -3.59 6.39 30.59 0.20 -3.39 16 19 C 0.52 14.16 8.02 87.90 0.70 14.86 16 20 O -0.56 -18.89 17.59 -3.03 -0.05 -18.95 16 21 N -0.61 -13.06 2.91 -821.97 -2.40 -15.46 16 22 C 0.16 2.91 6.06 85.63 0.52 3.43 16 23 C -0.12 -2.17 5.46 -19.87 -0.11 -2.28 16 24 C -0.12 -2.37 9.70 22.27 0.22 -2.15 16 25 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 26 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 27 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 28 C -0.11 -1.59 9.70 22.27 0.22 -1.37 16 29 C 0.12 2.50 6.65 86.90 0.58 3.07 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.62 7.80 -2.39 -0.02 1.60 16 32 H 0.04 1.61 6.06 -2.39 -0.01 1.60 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 4.43 5.95 -2.39 -0.01 4.41 16 35 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 36 H 0.13 2.94 8.14 -2.38 -0.02 2.93 16 37 H 0.10 2.88 7.89 -2.39 -0.02 2.86 16 38 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 39 H 0.12 1.44 8.08 -2.39 -0.02 1.42 16 40 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.09 1.98 7.07 -2.39 -0.02 1.96 16 46 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.25 382.09 5.45 -62.79 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.98 Total: 20.80 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.88 Total: -5.38 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -2.15 Total: -66.14 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.28 Total: -56.29 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.25 5.45 -62.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188058574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.211 kcal (2) G-P(sol) polarization free energy of solvation -68.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds