Wall clock time and date at job start Tue Mar 31 2020 16:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46905 * 2 1 4 4 H 1.08999 * 109.46822 * 304.99712 * 3 2 1 5 5 C 1.50697 * 109.47219 * 184.99780 * 3 2 1 6 6 H 1.07995 * 120.00515 * 239.99517 * 5 3 2 7 7 C 1.37884 * 120.00085 * 59.99362 * 5 3 2 8 8 N 1.31519 * 119.99746 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00312 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47003 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46797 * 119.99903 * 9 7 5 12 12 H 1.48492 * 109.47482 * 240.00232 * 9 7 5 13 13 O 1.45197 * 109.47314 * 64.99705 * 3 2 1 14 14 C 1.34235 * 116.99628 * 269.99970 * 13 3 2 15 15 O 1.20815 * 120.00163 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99448 * 180.02562 * 14 13 3 17 17 H 1.08999 * 110.88979 * 62.35696 * 16 14 13 18 18 C 1.54631 * 110.97163 * 298.54437 * 16 14 13 19 19 C 1.51281 * 104.31067 * 266.75032 * 18 16 14 20 20 O 1.21284 * 124.93855 * 163.71942 * 19 18 16 21 21 N 1.34418 * 110.11952 * 343.67722 * 19 18 16 22 22 C 1.46494 * 124.34952 * 179.61523 * 21 19 18 23 23 C 1.50700 * 109.47312 * 89.97719 * 22 21 19 24 24 C 1.38231 * 119.99849 * 269.72880 * 23 22 21 25 25 C 1.38242 * 119.99728 * 179.78627 * 24 23 22 26 26 C 1.38239 * 120.00176 * 0.45971 * 25 24 23 27 27 C 1.38238 * 119.99608 * 359.76925 * 26 25 24 28 28 C 1.38233 * 120.00072 * 0.02562 * 27 26 25 29 29 C 1.46765 * 111.29577 * 359.59413 * 21 19 18 30 30 H 1.09008 * 109.46808 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47681 * 300.00060 * 1 2 3 32 32 H 1.09001 * 109.47145 * 60.00885 * 1 2 3 33 33 H 1.09000 * 109.47370 * 239.99528 * 2 1 3 34 34 H 1.09005 * 109.46694 * 119.99270 * 2 1 3 35 35 H 0.96996 * 119.99618 * 179.97438 * 8 7 5 36 36 H 1.09002 * 110.48855 * 148.00293 * 18 16 14 37 37 H 1.08998 * 110.48570 * 25.49354 * 18 16 14 38 38 H 1.09002 * 109.47133 * 209.97336 * 22 21 19 39 39 H 1.09001 * 109.47172 * 329.97380 * 22 21 19 40 40 H 1.07990 * 120.00476 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.99989 * 180.24893 * 25 24 23 42 42 H 1.07996 * 119.99778 * 179.79223 * 26 25 24 43 43 H 1.07996 * 119.99451 * 179.97438 * 27 26 25 44 44 H 1.07995 * 119.99911 * 179.97438 * 28 27 26 45 45 H 1.09001 * 110.23936 * 136.01576 * 29 21 19 46 46 H 1.08998 * 110.24401 * 257.92122 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5465 -0.1941 11 1 6.4970 -0.5174 -1.4627 12 1 6.3990 1.6166 -2.6101 13 8 1.6557 2.0917 1.2406 14 6 0.4725 2.7255 1.2557 15 8 -0.2193 2.7369 0.2654 16 6 0.0072 3.4226 2.5081 17 1 0.6872 4.2305 2.7787 18 6 -0.1514 2.4191 3.6738 19 6 -1.6059 2.0071 3.6172 20 8 -2.0746 1.0354 4.1713 21 7 -2.3034 2.8750 2.8642 22 6 -3.7393 2.7673 2.5945 23 6 -4.5071 3.5105 3.6572 24 6 -4.9135 2.8533 4.8033 25 6 -5.6140 3.5361 5.7801 26 6 -5.9163 4.8738 5.6064 27 6 -5.5139 5.5299 4.4580 28 6 -4.8098 4.8481 3.4832 29 6 -1.4415 3.9446 2.3473 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8293 -0.0606 -2.9500 36 1 0.0718 2.9014 4.6255 37 1 0.4960 1.5551 3.5240 38 1 -3.9590 3.1995 1.6183 39 1 -4.0325 1.7175 2.6015 40 1 -4.6812 1.8072 4.9371 41 1 -5.9281 3.0237 6.6774 42 1 -6.4664 5.4064 6.3680 43 1 -5.7504 6.5748 4.3222 44 1 -4.4958 5.3605 2.5859 45 1 -1.6605 4.1303 1.2958 46 1 -1.5823 4.8562 2.9280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188058596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:12 Heat of formation + Delta-G solvation = -117.287169 kcal Electronic energy + Delta-G solvation = -28686.228060 eV Core-core repulsion = 24732.851673 eV Total energy + Delta-G solvation = -3953.376387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13062 -40.87018 -39.87299 -37.98311 -37.10129 -35.53955 -34.76945 -33.36709 -31.78733 -31.72727 -29.37145 -28.75465 -27.39766 -25.58140 -24.55155 -23.44793 -22.49803 -22.21819 -21.06764 -20.49919 -19.07869 -18.59821 -18.06908 -17.73418 -17.45395 -17.02241 -16.61336 -16.56586 -16.14211 -15.74086 -15.72483 -14.97354 -14.84117 -14.73547 -14.49246 -14.33568 -14.25590 -13.73666 -13.57522 -13.44593 -13.37678 -13.28192 -13.10249 -13.05675 -12.87571 -12.81562 -12.57327 -12.47846 -12.13625 -12.10106 -11.86409 -11.79253 -11.42797 -11.19408 -10.97998 -10.82176 -10.52946 -9.86284 -9.82166 -9.69488 -8.26981 -6.43239 0.33446 0.49978 1.34492 1.42546 1.43597 1.47128 1.56844 1.94547 2.06191 2.41981 2.94884 3.03120 3.20882 3.28869 3.70195 3.79779 3.86831 3.93740 4.15586 4.25922 4.30108 4.32032 4.33567 4.34474 4.50926 4.52168 4.56277 4.63351 4.68989 4.73235 4.79980 4.82838 4.83920 5.03760 5.07691 5.15674 5.17075 5.34731 5.44001 5.53022 5.56258 5.61909 5.65656 5.66069 5.98145 6.03320 6.10529 6.14913 6.62304 6.99568 7.05071 7.28585 8.79933 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.002564 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.386347 B =10919.615640 C =11036.970684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.010 0.990 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.276 1.276 13 O -0.360 6.360 14 C 0.450 3.550 15 O -0.536 6.536 16 C -0.088 4.088 17 H 0.175 0.825 18 C -0.140 4.140 19 C 0.507 3.493 20 O -0.572 6.572 21 N -0.608 5.608 22 C 0.164 3.836 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.106 4.106 29 C 0.117 3.883 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.269 0.731 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 12.612 13.891 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.028 0.972 5 C -0.583 4.583 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.202 1.202 13 O -0.276 6.276 14 C 0.294 3.706 15 O -0.426 6.426 16 C -0.107 4.107 17 H 0.192 0.808 18 C -0.179 4.179 19 C 0.296 3.704 20 O -0.452 6.452 21 N -0.340 5.340 22 C 0.043 3.957 23 C -0.117 4.117 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.124 4.124 29 C -0.005 4.005 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.173 0.827 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.111 0.889 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.424 11.983 13.638 23.822 hybrid contribution 0.756 -0.730 -0.696 1.261 sum -14.668 11.253 12.941 22.567 Atomic orbital electron populations 1.21656 0.96600 1.00083 0.99806 1.21869 0.94039 0.98683 1.02151 1.20318 0.94514 0.88897 0.78786 0.97183 1.21364 0.90521 1.39678 1.06755 0.91341 1.25799 1.04107 0.93966 0.94490 1.70021 1.37334 1.38102 1.09908 0.85180 0.77910 0.78157 0.78451 1.18569 1.20093 1.20168 1.86446 1.35921 1.62881 1.42363 1.24012 0.79584 0.76335 0.90695 1.90596 1.55629 1.59008 1.37394 1.22199 0.99458 0.99788 0.89305 0.80776 1.22385 0.93283 1.01153 1.01110 1.21316 0.90048 0.81653 0.77369 1.90671 1.76564 1.29151 1.48845 1.48344 1.08525 1.27168 1.49938 1.20300 0.77419 1.00423 0.97537 1.20189 0.99747 0.95464 0.96310 1.21189 0.98308 0.99855 0.94349 1.21377 0.98912 0.95547 0.99179 1.21516 0.99484 0.94339 0.98398 1.21490 0.97946 1.01091 0.93689 1.21295 0.98019 0.92932 1.00180 1.22350 0.85311 0.90530 1.02325 0.92899 0.95031 0.94272 0.89615 0.93953 0.92129 0.82682 0.88553 0.87557 0.91246 0.87797 0.85002 0.83798 0.83459 0.84111 0.88874 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.56 71.98 0.62 -5.00 16 2 C -0.13 -6.56 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.07 2.25 29.85 0.07 12.14 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -30.17 8.90 25.60 0.23 -29.94 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -51.92 11.29 21.45 0.24 -51.68 16 9 Si 0.98 42.26 29.54 68.60 2.03 44.28 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 13 O -0.36 -16.16 9.59 -51.46 -0.49 -16.65 16 14 C 0.45 16.74 5.71 71.24 0.41 17.14 16 15 O -0.54 -22.80 12.66 22.00 0.28 -22.53 16 16 C -0.09 -2.05 3.67 -10.36 -0.04 -2.08 16 17 H 0.17 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.14 -3.34 6.39 30.59 0.20 -3.14 16 19 C 0.51 15.09 8.02 87.90 0.71 15.79 16 20 O -0.57 -21.42 17.60 -3.04 -0.05 -21.47 16 21 N -0.61 -14.86 2.92 -821.62 -2.40 -17.26 16 22 C 0.16 3.70 6.06 85.63 0.52 4.21 16 23 C -0.12 -2.35 5.46 -19.87 -0.11 -2.46 16 24 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 25 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 26 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 27 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 28 C -0.11 -1.64 9.70 22.27 0.22 -1.42 16 29 C 0.12 2.26 6.74 86.95 0.59 2.85 16 30 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.03 1.38 6.06 -2.39 -0.01 1.37 16 32 H 0.04 1.84 7.80 -2.39 -0.02 1.82 16 33 H 0.09 4.76 5.95 -2.39 -0.01 4.75 16 34 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.16 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.10 2.77 7.73 -2.39 -0.02 2.76 16 38 H 0.11 1.98 8.09 -2.39 -0.02 1.96 16 39 H 0.07 1.83 7.87 -2.39 -0.02 1.81 16 40 H 0.10 2.67 8.06 -2.92 -0.02 2.65 16 41 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 43 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.09 2.02 6.96 -2.39 -0.02 2.01 16 46 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -73.61 381.72 5.48 -68.14 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.98 Total: 21.57 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.90 Total: -4.41 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -2.15 Total: -68.94 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.27 Total: -60.65 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -73.61 5.48 -68.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188058596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.150 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds