Wall clock time and date at job start Tue Mar 31 2020 16:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47440 * 2 1 4 4 H 1.08999 * 109.47013 * 55.00215 * 3 2 1 5 5 C 1.50698 * 109.47341 * 175.00092 * 3 2 1 6 6 H 1.07997 * 120.00337 * 119.99829 * 5 3 2 7 7 C 1.37879 * 119.99752 * 300.00448 * 5 3 2 8 8 N 1.31514 * 120.00095 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46940 * 60.00021 * 9 7 5 11 11 H 1.48504 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 299.99622 * 9 7 5 13 13 O 1.45198 * 109.47447 * 295.00475 * 3 2 1 14 14 C 1.34225 * 117.00563 * 90.00004 * 13 3 2 15 15 O 1.20825 * 119.99692 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00180 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.85250 * 303.78502 * 16 14 13 18 18 C 1.54784 * 110.83866 * 67.78124 * 16 14 13 19 19 C 1.51278 * 104.12065 * 143.12310 * 18 16 14 20 20 O 1.21283 * 124.94441 * 163.67549 * 19 18 16 21 21 N 1.34420 * 110.11582 * 343.40725 * 19 18 16 22 22 C 1.46502 * 124.35242 * 179.80107 * 21 19 18 23 23 C 1.50703 * 109.46961 * 90.02285 * 22 21 19 24 24 C 1.38241 * 120.00093 * 269.72777 * 23 22 21 25 25 C 1.38234 * 119.99857 * 179.79067 * 24 23 22 26 26 C 1.38231 * 119.99958 * 0.43760 * 25 24 23 27 27 C 1.38239 * 120.00380 * 359.81929 * 26 25 24 28 28 C 1.38235 * 119.99883 * 90.00362 * 23 22 21 29 29 C 1.46764 * 111.30051 * 359.82146 * 21 19 18 30 30 H 1.09001 * 109.47205 * 300.00120 * 1 2 3 31 31 H 1.08999 * 109.46858 * 59.99335 * 1 2 3 32 32 H 1.08997 * 109.47718 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46295 * 239.99850 * 2 1 3 34 34 H 1.08999 * 109.46858 * 120.00665 * 2 1 3 35 35 H 0.96998 * 119.99717 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.61291 * 24.42061 * 18 16 14 37 37 H 1.09001 * 110.42713 * 261.73011 * 18 16 14 38 38 H 1.08993 * 109.47522 * 210.02496 * 22 21 19 39 39 H 1.08998 * 109.46856 * 330.02675 * 22 21 19 40 40 H 1.08001 * 119.99506 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.99566 * 180.27564 * 25 24 23 42 42 H 1.07998 * 120.00047 * 179.83031 * 26 25 24 43 43 H 1.07996 * 120.00087 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00140 * 359.97438 * 28 23 22 45 45 H 1.09003 * 110.24343 * 136.01592 * 29 21 19 46 46 H 1.09001 * 110.24815 * 258.01552 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8781 1.2279 8 7 3.4062 0.3372 2.1732 9 14 6.0051 0.8797 1.3811 10 1 6.5005 2.2796 1.3808 11 1 6.3979 0.2163 2.6503 12 1 6.5967 0.1449 0.2342 13 8 1.6559 2.0917 -1.2406 14 6 0.4729 2.7255 -1.2559 15 8 -0.2191 2.7371 -0.2654 16 6 0.0072 3.4218 -2.5086 17 1 0.7413 4.1561 -2.8401 18 6 -0.3028 2.3963 -3.6258 19 6 -1.5083 2.9746 -4.3335 20 8 -1.8988 2.6353 -5.4305 21 7 -2.0871 3.9151 -3.5672 22 6 -3.2763 4.6789 -3.9529 23 6 -4.5125 3.9496 -3.4935 24 6 -5.1228 3.0309 -4.3269 25 6 -6.2542 2.3588 -3.9038 26 6 -6.7806 2.6120 -2.6509 27 6 -6.1734 3.5346 -1.8196 28 6 -5.0395 4.2036 -2.2410 29 6 -1.3745 4.0789 -2.2947 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8293 -0.0607 2.9501 36 1 -0.5424 1.4230 -3.1975 37 1 0.5400 2.3151 -4.3122 38 1 -3.2419 5.6642 -3.4881 39 1 -3.3014 4.7893 -5.0370 40 1 -4.7134 2.8355 -5.3070 41 1 -6.7284 1.6377 -4.5532 42 1 -7.6661 2.0889 -2.3215 43 1 -6.5850 3.7327 -0.8410 44 1 -4.5651 4.9243 -1.5916 45 1 -1.2568 5.1373 -2.0619 46 1 -1.9127 3.5732 -1.4931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188058620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:16 Heat of formation + Delta-G solvation = -100.801117 kcal Electronic energy + Delta-G solvation = -28493.848991 eV Core-core repulsion = 24541.187493 eV Total energy + Delta-G solvation = -3952.661498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92039 -39.62257 -39.02604 -36.61332 -35.72634 -33.95159 -33.50311 -31.44852 -31.06406 -30.84756 -27.82146 -27.43443 -26.48966 -23.96093 -22.99205 -22.65878 -21.72598 -20.56275 -19.59598 -19.36165 -17.62986 -17.29640 -16.80260 -16.46780 -16.16960 -15.76156 -15.44324 -15.19812 -14.92815 -14.79852 -14.38156 -13.76970 -13.69834 -13.56449 -13.55170 -13.10437 -12.90707 -12.77863 -12.70469 -12.29307 -12.08151 -11.61316 -11.58598 -11.48405 -11.42485 -11.22848 -11.20575 -11.14477 -10.98836 -10.70893 -10.34483 -10.09724 -9.85113 -9.64543 -9.43709 -9.08341 -9.02865 -8.88334 -8.84213 -8.50412 -6.23261 -4.30790 1.07489 1.24139 2.49307 2.75617 2.84865 3.23132 3.26926 3.28426 3.46065 3.70097 4.20389 4.26636 4.35178 4.55918 4.62919 4.79970 4.84010 4.92379 4.95893 5.03078 5.09097 5.25207 5.33142 5.41941 5.45625 5.52189 5.61446 5.76918 5.78859 5.87017 5.88591 6.17249 6.23164 6.27462 6.30181 6.33947 6.39270 6.40444 6.79765 6.81663 6.89031 6.94142 7.09842 7.17412 7.55802 7.67424 7.86531 8.04596 8.09473 8.52210 8.80952 9.34677 10.83353 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.002719 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.050349 B =10295.744516 C =10859.039983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.350 6.350 14 C 0.464 3.536 15 O -0.510 6.510 16 C -0.099 4.099 17 H 0.124 0.876 18 C -0.140 4.140 19 C 0.524 3.476 20 O -0.530 6.530 21 N -0.614 5.614 22 C 0.168 3.832 23 C -0.112 4.112 24 C -0.097 4.097 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.102 4.102 29 C 0.113 3.887 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.267 0.733 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.087 0.913 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.563 8.055 -9.797 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.306 3.694 15 O -0.400 6.400 16 C -0.119 4.119 17 H 0.142 0.858 18 C -0.180 4.180 19 C 0.312 3.688 20 O -0.407 6.407 21 N -0.348 5.348 22 C 0.046 3.954 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.141 4.141 28 C -0.121 4.121 29 C -0.009 4.009 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.105 0.895 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.957 7.800 -9.892 20.330 hybrid contribution 0.869 -0.159 0.461 0.997 sum -15.088 7.641 -9.431 19.364 Atomic orbital electron populations 1.21861 0.98379 0.99102 1.00609 1.22032 0.92581 0.99345 1.03499 1.20715 0.95066 0.88766 0.78425 0.93415 1.20995 0.89609 1.39235 1.06314 0.91325 1.24880 0.99253 0.94689 0.95047 1.69874 1.35524 1.37660 1.09450 0.86340 0.83830 0.78505 0.77514 1.19982 1.21030 1.19905 1.86477 1.33649 1.62098 1.44316 1.22605 0.81172 0.77127 0.88523 1.90626 1.55413 1.58437 1.35528 1.21879 0.98089 0.98569 0.93330 0.85792 1.22321 0.98252 0.99827 0.97635 1.20839 0.84564 0.78738 0.84669 1.90701 1.68059 1.62231 1.19665 1.48330 1.28058 1.39605 1.18812 1.20256 0.80584 0.93299 1.01242 1.20233 0.97015 0.98987 0.95107 1.21176 0.95170 0.95244 0.99962 1.21170 0.96661 0.99862 0.96522 1.21196 0.99952 0.97978 0.94351 1.21154 0.96248 0.97004 0.99731 1.21075 0.96013 0.99718 0.95255 1.22070 0.90671 1.01971 0.86211 0.92787 0.95128 0.94753 0.93875 0.87270 0.92277 0.87144 0.86580 0.89257 0.89008 0.85682 0.86092 0.86164 0.85979 0.85972 0.89452 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.61 2.25 -27.89 -0.06 5.55 16 4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.52 -14.09 8.90 -34.44 -0.31 -14.40 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.37 11.29 55.43 0.63 -23.74 16 9 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 O -0.35 -7.62 9.81 -39.24 -0.38 -8.01 16 14 C 0.46 8.52 5.64 36.01 0.20 8.72 16 15 O -0.51 -10.49 12.65 -18.75 -0.24 -10.72 16 16 C -0.10 -1.29 3.67 -90.05 -0.33 -1.62 16 17 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.81 6.41 -26.66 -0.17 -1.98 16 19 C 0.52 7.15 8.02 -10.86 -0.09 7.07 16 20 O -0.53 -8.69 17.60 5.55 0.10 -8.59 16 21 N -0.61 -7.04 2.92 -173.78 -0.51 -7.54 16 22 C 0.17 1.60 6.06 -5.19 -0.03 1.57 16 23 C -0.11 -1.19 5.46 -104.62 -0.57 -1.76 16 24 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 25 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 28 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 29 C 0.11 1.29 6.71 -3.12 -0.02 1.27 16 30 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 31 H 0.03 0.60 6.06 -51.93 -0.31 0.29 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.11 1.54 7.89 -51.93 -0.41 1.13 16 37 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.24 6.96 -51.93 -0.36 0.88 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -31.18 382.01 -9.70 -40.89 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.77 Total: 4.15 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.26 Total: -7.67 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.12 Total: -31.29 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.52 Total: -27.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.18 -9.70 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188058620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.915 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds