Wall clock time and date at job start Tue Mar 31 2020 16:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47440 * 2 1 4 4 H 1.08999 * 109.47013 * 55.00215 * 3 2 1 5 5 C 1.50698 * 109.47341 * 175.00092 * 3 2 1 6 6 H 1.07997 * 120.00337 * 119.99829 * 5 3 2 7 7 C 1.37879 * 119.99752 * 300.00448 * 5 3 2 8 8 N 1.31514 * 120.00095 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46940 * 60.00021 * 9 7 5 11 11 H 1.48504 * 109.47104 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47225 * 299.99622 * 9 7 5 13 13 O 1.45198 * 109.47447 * 295.00475 * 3 2 1 14 14 C 1.34225 * 117.00563 * 90.00004 * 13 3 2 15 15 O 1.20825 * 119.99692 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00180 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.85250 * 303.78502 * 16 14 13 18 18 C 1.54784 * 110.83866 * 67.78124 * 16 14 13 19 19 C 1.51278 * 104.12065 * 143.12310 * 18 16 14 20 20 O 1.21283 * 124.94441 * 163.67549 * 19 18 16 21 21 N 1.34420 * 110.11582 * 343.40725 * 19 18 16 22 22 C 1.46502 * 124.35242 * 179.80107 * 21 19 18 23 23 C 1.50703 * 109.46961 * 90.02285 * 22 21 19 24 24 C 1.38241 * 120.00093 * 269.72777 * 23 22 21 25 25 C 1.38234 * 119.99857 * 179.79067 * 24 23 22 26 26 C 1.38231 * 119.99958 * 0.43760 * 25 24 23 27 27 C 1.38239 * 120.00380 * 359.81929 * 26 25 24 28 28 C 1.38235 * 119.99883 * 90.00362 * 23 22 21 29 29 C 1.46764 * 111.30051 * 359.82146 * 21 19 18 30 30 H 1.09001 * 109.47205 * 300.00120 * 1 2 3 31 31 H 1.08999 * 109.46858 * 59.99335 * 1 2 3 32 32 H 1.08997 * 109.47718 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46295 * 239.99850 * 2 1 3 34 34 H 1.08999 * 109.46858 * 120.00665 * 2 1 3 35 35 H 0.96998 * 119.99717 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.61291 * 24.42061 * 18 16 14 37 37 H 1.09001 * 110.42713 * 261.73011 * 18 16 14 38 38 H 1.08993 * 109.47522 * 210.02496 * 22 21 19 39 39 H 1.08998 * 109.46856 * 330.02675 * 22 21 19 40 40 H 1.08001 * 119.99506 * 0.02562 * 24 23 22 41 41 H 1.08001 * 119.99566 * 180.27564 * 25 24 23 42 42 H 1.07998 * 120.00047 * 179.83031 * 26 25 24 43 43 H 1.07996 * 120.00087 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00140 * 359.97438 * 28 23 22 45 45 H 1.09003 * 110.24343 * 136.01592 * 29 21 19 46 46 H 1.09001 * 110.24815 * 258.01552 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8781 1.2279 8 7 3.4062 0.3372 2.1732 9 14 6.0051 0.8797 1.3811 10 1 6.5005 2.2796 1.3808 11 1 6.3979 0.2163 2.6503 12 1 6.5967 0.1449 0.2342 13 8 1.6559 2.0917 -1.2406 14 6 0.4729 2.7255 -1.2559 15 8 -0.2191 2.7371 -0.2654 16 6 0.0072 3.4218 -2.5086 17 1 0.7413 4.1561 -2.8401 18 6 -0.3028 2.3963 -3.6258 19 6 -1.5083 2.9746 -4.3335 20 8 -1.8988 2.6353 -5.4305 21 7 -2.0871 3.9151 -3.5672 22 6 -3.2763 4.6789 -3.9529 23 6 -4.5125 3.9496 -3.4935 24 6 -5.1228 3.0309 -4.3269 25 6 -6.2542 2.3588 -3.9038 26 6 -6.7806 2.6120 -2.6509 27 6 -6.1734 3.5346 -1.8196 28 6 -5.0395 4.2036 -2.2410 29 6 -1.3745 4.0789 -2.2947 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8293 -0.0607 2.9501 36 1 -0.5424 1.4230 -3.1975 37 1 0.5400 2.3151 -4.3122 38 1 -3.2419 5.6642 -3.4881 39 1 -3.3014 4.7893 -5.0370 40 1 -4.7134 2.8355 -5.3070 41 1 -6.7284 1.6377 -4.5532 42 1 -7.6661 2.0889 -2.3215 43 1 -6.5850 3.7327 -0.8410 44 1 -4.5651 4.9243 -1.5916 45 1 -1.2568 5.1373 -2.0619 46 1 -1.9127 3.5732 -1.4931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188058620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:15 Heat of formation + Delta-G solvation = -116.195791 kcal Electronic energy + Delta-G solvation = -28494.516554 eV Core-core repulsion = 24541.187493 eV Total energy + Delta-G solvation = -3953.329061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08629 -40.96857 -39.90028 -37.99053 -37.15943 -35.51309 -34.77779 -33.33365 -31.81081 -31.77523 -29.35149 -28.83054 -27.42237 -25.50862 -24.51062 -23.47425 -22.52332 -22.18039 -21.09325 -20.47345 -19.05554 -18.63956 -18.14003 -17.71880 -17.40548 -16.93273 -16.66888 -16.57253 -16.13658 -15.81572 -15.70408 -14.96727 -14.80273 -14.72727 -14.63202 -14.50265 -14.30298 -13.76046 -13.68544 -13.48770 -13.34977 -13.27910 -13.12601 -13.02260 -12.78225 -12.62730 -12.52755 -12.40726 -12.15810 -12.11465 -11.88202 -11.75190 -11.46757 -11.31909 -10.95621 -10.80811 -10.50109 -9.89385 -9.84538 -9.70990 -8.25297 -6.41503 0.30602 0.47559 1.30458 1.43587 1.44304 1.46763 1.54435 1.78428 2.11654 2.42689 2.92110 3.04706 3.16170 3.31208 3.72584 3.80205 3.83649 3.91540 4.12783 4.16651 4.25683 4.28456 4.37332 4.39317 4.45958 4.55020 4.55498 4.59025 4.67508 4.70774 4.77683 4.85323 4.88094 5.06708 5.10217 5.12652 5.22210 5.38748 5.41785 5.53409 5.54174 5.59226 5.61154 5.69720 5.96588 6.00610 6.08302 6.15836 6.62964 6.98152 7.02493 7.30006 8.80898 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.002719 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.050349 B =10295.744516 C =10859.039983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.266 1.266 13 O -0.358 6.358 14 C 0.460 3.540 15 O -0.533 6.533 16 C -0.087 4.087 17 H 0.155 0.845 18 C -0.139 4.139 19 C 0.522 3.478 20 O -0.562 6.562 21 N -0.605 5.605 22 C 0.165 3.835 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.132 4.132 28 C -0.109 4.109 29 C 0.119 3.881 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.270 0.730 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 9.180 -10.124 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.175 3.825 4 H 0.029 0.971 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.800 3.200 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.191 1.191 13 O -0.274 6.274 14 C 0.304 3.696 15 O -0.424 6.424 16 C -0.106 4.106 17 H 0.173 0.827 18 C -0.179 4.179 19 C 0.311 3.689 20 O -0.441 6.441 21 N -0.337 5.337 22 C 0.044 3.956 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.150 4.150 28 C -0.128 4.128 29 C -0.004 4.004 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.141 0.859 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.996 8.950 -10.218 20.985 hybrid contribution 0.763 -0.491 0.582 1.078 sum -15.233 8.459 -9.635 19.911 Atomic orbital electron populations 1.21712 0.96310 1.00449 1.00169 1.21879 0.94377 0.98372 1.02295 1.20342 0.94378 0.89138 0.78686 0.97053 1.21316 0.90699 1.39865 1.06785 0.91466 1.25748 1.03907 0.93982 0.94498 1.69999 1.37385 1.37961 1.09838 0.85324 0.78133 0.78789 0.77730 1.19283 1.20505 1.19093 1.86459 1.35708 1.62778 1.42472 1.23572 0.79709 0.76282 0.90047 1.90620 1.55622 1.59049 1.37067 1.21949 0.99706 0.98630 0.90304 0.82692 1.22313 0.98707 0.99162 0.97675 1.20888 0.84729 0.78935 0.84393 1.90688 1.68973 1.63340 1.21114 1.48367 1.28220 1.38860 1.18230 1.20471 0.79330 0.94251 1.01511 1.20372 0.97479 0.99112 0.95444 1.21260 0.96053 0.96283 0.99933 1.21410 0.96575 1.00113 0.97233 1.21501 1.00576 0.98005 0.94038 1.21493 0.96198 0.96740 1.00580 1.21337 0.96207 1.00060 0.95176 1.22096 0.89159 1.03646 0.85473 0.94327 0.94343 0.92472 0.93670 0.89698 0.92114 0.88377 0.85208 0.86033 0.89241 0.86805 0.84874 0.84158 0.84144 0.84271 0.85943 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.57 71.98 0.62 -4.82 16 2 C -0.13 -6.36 5.49 30.59 0.17 -6.19 16 3 C 0.23 11.72 2.25 29.84 0.07 11.79 16 4 H 0.01 0.67 7.16 -2.39 -0.02 0.66 16 5 C -0.55 -29.90 8.90 25.60 0.23 -29.67 16 6 H 0.07 3.58 7.81 -2.91 -0.02 3.55 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -50.97 11.29 21.45 0.24 -50.73 16 9 Si 0.98 41.75 29.54 68.60 2.03 43.77 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 13 O -0.36 -15.62 9.81 -51.37 -0.50 -16.13 16 14 C 0.46 16.61 5.64 71.24 0.40 17.01 16 15 O -0.53 -21.92 12.65 21.97 0.28 -21.64 16 16 C -0.09 -2.07 3.67 -10.43 -0.04 -2.11 16 17 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.14 -3.40 6.41 30.64 0.20 -3.20 16 19 C 0.52 13.66 8.02 87.90 0.70 14.37 16 20 O -0.56 -18.25 17.60 -3.04 -0.05 -18.30 16 21 N -0.60 -12.64 2.92 -822.32 -2.40 -15.04 16 22 C 0.16 2.83 6.06 85.63 0.52 3.34 16 23 C -0.12 -2.46 5.46 -19.86 -0.11 -2.57 16 24 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 25 C -0.14 -2.67 10.05 22.27 0.22 -2.44 16 26 C -0.12 -2.18 10.05 22.27 0.22 -1.96 16 27 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 28 C -0.11 -1.98 9.70 22.27 0.22 -1.76 16 29 C 0.12 2.40 6.71 86.83 0.58 2.98 16 30 H 0.04 1.71 7.80 -2.39 -0.02 1.70 16 31 H 0.04 1.52 6.06 -2.39 -0.01 1.51 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 4.55 5.95 -2.39 -0.01 4.54 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.10 2.68 7.89 -2.39 -0.02 2.66 16 37 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.12 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.09 1.60 7.87 -2.39 -0.02 1.59 16 40 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 1.90 6.96 -2.39 -0.02 1.88 16 Total: -1.00 -68.83 382.01 5.45 -63.38 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.98 Total: 22.92 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 4.89 Total: -8.24 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -2.16 Total: -65.77 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.28 Total: -56.07 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.83 5.45 -63.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188058620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.819 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds