Wall clock time and date at job start Tue Mar 31 2020 15:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47401 * 2 1 4 4 H 1.08994 * 109.47103 * 55.00514 * 3 2 1 5 5 C 1.50706 * 109.47212 * 175.00597 * 3 2 1 6 6 H 1.07997 * 120.00024 * 120.00076 * 5 3 2 7 7 C 1.37877 * 119.99743 * 299.99787 * 5 3 2 8 8 N 1.31515 * 119.99942 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47088 * 120.00017 * 9 7 5 12 12 H 1.48501 * 109.47159 * 240.00288 * 9 7 5 13 13 O 1.45198 * 109.47129 * 295.00191 * 3 2 1 14 14 C 1.34230 * 116.99848 * 90.00214 * 13 3 2 15 15 O 1.20825 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00066 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.81367 * 9.96363 * 16 14 13 18 18 C 1.53281 * 109.91350 * 130.97720 * 16 14 13 19 19 C 1.50602 * 110.81137 * 167.18036 * 18 16 14 20 20 C 1.38979 * 117.60411 * 160.27676 * 19 18 16 21 21 C 1.37905 * 120.58138 * 179.38974 * 20 19 18 22 22 C 1.38264 * 119.82476 * 0.02562 * 21 20 19 23 23 C 1.37956 * 119.71894 * 0.19683 * 22 21 20 24 24 C 1.37666 * 122.87203 * 340.03051 * 19 18 16 25 25 C 1.50811 * 122.35262 * 0.87963 * 24 19 18 26 26 N 1.46681 * 109.68272 * 348.91496 * 25 24 19 27 27 C 1.34787 * 121.33881 * 224.24054 * 26 25 24 28 28 C 1.50694 * 119.99690 * 5.75872 * 27 26 25 29 29 O 1.21278 * 119.99513 * 185.76065 * 27 26 25 30 30 H 1.08993 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46372 * 299.99847 * 1 2 3 32 32 H 1.08992 * 109.47411 * 59.99400 * 1 2 3 33 33 H 1.09004 * 109.46821 * 240.00411 * 2 1 3 34 34 H 1.09002 * 109.47620 * 120.00100 * 2 1 3 35 35 H 0.97004 * 119.99686 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.31062 * 46.77383 * 18 16 14 37 37 H 1.09002 * 109.11896 * 287.45776 * 18 16 14 38 38 H 1.08000 * 119.70934 * 359.36567 * 20 19 18 39 39 H 1.08009 * 120.08787 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.13663 * 180.16935 * 22 21 20 41 41 H 1.08004 * 119.74438 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.43214 * 228.85358 * 25 24 19 43 43 H 1.08999 * 109.40621 * 108.96166 * 25 24 19 44 44 H 1.09002 * 109.47215 * 274.57205 * 28 27 26 45 45 H 1.08999 * 109.47674 * 34.58011 * 28 27 26 46 46 H 1.09000 * 109.46875 * 154.57429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1472 1.8888 -0.6525 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0051 0.8810 1.3815 10 1 6.5987 1.5471 0.1945 11 1 6.3992 1.6165 2.6100 12 1 6.4971 -0.5177 1.4626 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7255 -1.2558 15 8 -0.2191 2.7371 -0.2654 16 6 0.0069 3.4218 -2.5086 17 1 0.6611 3.1617 -3.3408 18 6 -1.4343 3.0101 -2.8296 19 6 -2.0274 3.9125 -3.8792 20 6 -3.1346 3.4465 -4.5782 21 6 -3.7343 4.2273 -5.5438 22 6 -3.2313 5.4850 -5.8214 23 6 -2.1296 5.9483 -5.1323 24 6 -1.5234 5.1621 -4.1617 25 6 -0.3174 5.7251 -3.4526 26 7 0.0187 4.8795 -2.3022 27 6 0.3313 5.4156 -1.1057 28 6 0.2147 6.9028 -0.8929 29 8 0.7064 4.7009 -0.2004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.8295 -0.0620 2.9493 36 1 -2.0366 3.0700 -1.9232 37 1 -1.4392 1.9832 -3.1952 38 1 -3.5285 2.4641 -4.3635 39 1 -4.5941 3.8571 -6.0825 40 1 -3.6987 6.1018 -6.5747 41 1 -1.7361 6.9305 -5.3491 42 1 -0.5381 6.7354 -3.1080 43 1 0.5272 5.7532 -4.1411 44 1 1.1309 7.3905 -1.2259 45 1 -0.6299 7.2867 -1.4649 46 1 0.0588 7.1071 0.1664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188061029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:24 Heat of formation + Delta-G solvation = -85.824098 kcal Electronic energy + Delta-G solvation = -29606.461024 eV Core-core repulsion = 25654.448978 eV Total energy + Delta-G solvation = -3952.012046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98703 -39.39554 -38.55251 -36.16841 -35.40517 -33.35001 -33.26855 -31.62429 -31.25695 -30.51423 -28.92537 -27.18378 -25.87514 -24.82333 -23.03008 -22.46806 -21.13692 -21.08595 -19.49047 -18.47453 -17.41190 -17.09753 -16.56319 -16.36489 -15.83234 -15.60132 -15.10283 -14.91248 -14.88227 -14.52412 -14.34160 -14.03798 -13.54593 -13.43489 -13.19866 -13.05667 -12.70552 -12.60954 -12.46559 -12.21374 -12.10243 -11.85688 -11.64289 -11.39789 -11.29673 -11.24703 -11.06193 -11.02445 -10.85497 -10.51837 -10.16571 -9.69504 -9.45595 -9.29370 -9.09257 -9.06204 -8.80533 -8.68361 -8.58877 -8.31205 -6.05937 -4.11138 1.09223 1.13487 2.59599 2.78755 3.30312 3.36362 3.41490 3.47572 3.59686 3.65859 4.37891 4.41140 4.58172 4.63040 4.67018 4.84148 4.89389 4.93506 5.14025 5.16004 5.21911 5.25927 5.32047 5.36631 5.42221 5.47885 5.71335 5.74953 5.79500 5.91083 6.01313 6.16759 6.26855 6.32374 6.33908 6.36809 6.40501 6.57457 6.74700 6.99068 7.14865 7.31175 7.36753 7.45698 7.75427 7.92566 8.15116 8.28992 8.36824 8.84670 9.11319 9.53000 11.01187 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.003448 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.376558 B = 8117.912240 C = 8860.902241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.228 3.772 4 H 0.050 0.950 5 C -0.513 4.513 6 H 0.066 0.934 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.358 6.358 14 C 0.471 3.529 15 O -0.493 6.493 16 C 0.151 3.849 17 H 0.102 0.898 18 C -0.088 4.088 19 C -0.058 4.058 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.099 4.099 25 C 0.153 3.847 26 N -0.611 5.611 27 C 0.500 3.500 28 C -0.168 4.168 29 O -0.485 6.485 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 12.267 -16.452 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.175 3.825 4 H 0.068 0.932 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.275 6.275 14 C 0.312 3.688 15 O -0.381 6.381 16 C 0.047 3.953 17 H 0.120 0.880 18 C -0.125 4.125 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.100 4.100 25 C 0.030 3.970 26 N -0.350 5.350 27 C 0.288 3.712 28 C -0.227 4.227 29 O -0.357 6.357 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.760 11.757 -15.374 23.182 hybrid contribution 0.767 -0.028 0.028 0.768 sum -11.993 11.729 -15.346 22.735 Atomic orbital electron populations 1.21839 0.98482 0.98689 1.00721 1.22030 0.92594 0.99677 1.03128 1.20569 0.94683 0.88231 0.78995 0.93184 1.21082 0.89951 1.38144 1.05979 0.91621 1.24869 0.99008 0.95051 0.95140 1.69911 1.35055 1.38279 1.09491 0.86269 0.84293 0.77719 0.78127 1.19596 1.20842 1.20805 1.86391 1.34019 1.62914 1.44164 1.22052 0.81625 0.77132 0.88027 1.90586 1.55964 1.57398 1.34135 1.20801 0.97065 0.80627 0.96838 0.88042 1.20854 0.94298 0.98773 0.98623 1.19445 0.95805 0.94011 0.96533 1.21198 0.95726 1.00252 0.96339 1.21083 0.99924 0.94641 0.97893 1.21044 0.96812 0.96275 1.00056 1.20981 0.96354 0.99611 0.96119 1.19813 0.97626 0.94529 0.98050 1.20574 0.94831 0.94365 0.87207 1.48000 1.70969 1.05014 1.11031 1.20932 0.77476 0.91414 0.81383 1.21923 1.03813 0.91838 1.05159 1.90999 1.43016 1.60927 1.40779 0.95018 0.92816 0.95100 0.94214 0.87458 0.92640 0.88438 0.89006 0.85825 0.86004 0.85969 0.85782 0.88056 0.89738 0.88858 0.90186 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.57 37.15 0.32 -2.90 16 2 C -0.14 -3.56 5.49 -26.73 -0.15 -3.71 16 3 C 0.23 6.48 2.25 -27.88 -0.06 6.42 16 4 H 0.05 1.62 7.16 -51.93 -0.37 1.25 16 5 C -0.51 -15.27 8.90 -34.44 -0.31 -15.58 16 6 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -26.35 11.29 55.43 0.63 -25.72 16 9 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 O -0.36 -9.21 9.81 -39.83 -0.39 -9.60 16 14 C 0.47 10.54 3.24 36.01 0.12 10.65 16 15 O -0.49 -12.32 11.26 -26.99 -0.30 -12.62 16 16 C 0.15 2.48 3.35 -68.54 -0.23 2.25 16 17 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 18 C -0.09 -1.20 5.19 -27.79 -0.14 -1.34 16 19 C -0.06 -0.66 5.76 -104.60 -0.60 -1.26 16 20 C -0.12 -1.15 9.59 -39.43 -0.38 -1.53 16 21 C -0.12 -0.98 10.04 -39.69 -0.40 -1.38 16 22 C -0.12 -0.95 10.05 -39.68 -0.40 -1.35 16 23 C -0.11 -0.89 9.62 -39.46 -0.38 -1.27 16 24 C -0.10 -0.99 5.82 -104.55 -0.61 -1.60 16 25 C 0.15 1.44 6.10 -5.04 -0.03 1.41 16 26 N -0.61 -8.79 2.93 -167.85 -0.49 -9.28 16 27 C 0.50 8.32 7.70 -10.98 -0.08 8.23 16 28 C -0.17 -1.79 9.43 36.00 0.34 -1.45 16 29 O -0.49 -11.26 12.67 -19.91 -0.25 -11.52 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.31 7.80 -51.93 -0.40 0.91 16 32 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.11 3.03 5.95 -51.93 -0.31 2.72 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 37 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 38 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.66 8.05 -52.48 -0.42 0.24 16 42 H 0.10 0.69 5.63 -51.93 -0.29 0.39 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.61 6.40 -51.93 -0.33 0.28 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -36.79 367.08 -10.00 -46.79 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.61 Total: 2.12 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -3.09 Total: -2.72 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.13 Total: -35.00 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.95 Total: -33.74 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.79 -10.00 -46.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188061029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.032 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds