Wall clock time and date at job start Tue Mar 31 2020 15:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47401 * 2 1 4 4 H 1.08994 * 109.47103 * 55.00514 * 3 2 1 5 5 C 1.50706 * 109.47212 * 175.00597 * 3 2 1 6 6 H 1.07997 * 120.00024 * 120.00076 * 5 3 2 7 7 C 1.37877 * 119.99743 * 299.99787 * 5 3 2 8 8 N 1.31515 * 119.99942 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47088 * 120.00017 * 9 7 5 12 12 H 1.48501 * 109.47159 * 240.00288 * 9 7 5 13 13 O 1.45198 * 109.47129 * 295.00191 * 3 2 1 14 14 C 1.34230 * 116.99848 * 90.00214 * 13 3 2 15 15 O 1.20825 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00066 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.81367 * 9.96363 * 16 14 13 18 18 C 1.53281 * 109.91350 * 130.97720 * 16 14 13 19 19 C 1.50602 * 110.81137 * 167.18036 * 18 16 14 20 20 C 1.38979 * 117.60411 * 160.27676 * 19 18 16 21 21 C 1.37905 * 120.58138 * 179.38974 * 20 19 18 22 22 C 1.38264 * 119.82476 * 0.02562 * 21 20 19 23 23 C 1.37956 * 119.71894 * 0.19683 * 22 21 20 24 24 C 1.37666 * 122.87203 * 340.03051 * 19 18 16 25 25 C 1.50811 * 122.35262 * 0.87963 * 24 19 18 26 26 N 1.46681 * 109.68272 * 348.91496 * 25 24 19 27 27 C 1.34787 * 121.33881 * 224.24054 * 26 25 24 28 28 C 1.50694 * 119.99690 * 5.75872 * 27 26 25 29 29 O 1.21278 * 119.99513 * 185.76065 * 27 26 25 30 30 H 1.08993 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46372 * 299.99847 * 1 2 3 32 32 H 1.08992 * 109.47411 * 59.99400 * 1 2 3 33 33 H 1.09004 * 109.46821 * 240.00411 * 2 1 3 34 34 H 1.09002 * 109.47620 * 120.00100 * 2 1 3 35 35 H 0.97004 * 119.99686 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.31062 * 46.77383 * 18 16 14 37 37 H 1.09002 * 109.11896 * 287.45776 * 18 16 14 38 38 H 1.08000 * 119.70934 * 359.36567 * 20 19 18 39 39 H 1.08009 * 120.08787 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.13663 * 180.16935 * 22 21 20 41 41 H 1.08004 * 119.74438 * 179.97438 * 23 22 21 42 42 H 1.09005 * 109.43214 * 228.85358 * 25 24 19 43 43 H 1.08999 * 109.40621 * 108.96166 * 25 24 19 44 44 H 1.09002 * 109.47215 * 274.57205 * 28 27 26 45 45 H 1.08999 * 109.47674 * 34.58011 * 28 27 26 46 46 H 1.09000 * 109.46875 * 154.57429 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1472 1.8888 -0.6525 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0051 0.8810 1.3815 10 1 6.5987 1.5471 0.1945 11 1 6.3992 1.6165 2.6100 12 1 6.4971 -0.5177 1.4626 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7255 -1.2558 15 8 -0.2191 2.7371 -0.2654 16 6 0.0069 3.4218 -2.5086 17 1 0.6611 3.1617 -3.3408 18 6 -1.4343 3.0101 -2.8296 19 6 -2.0274 3.9125 -3.8792 20 6 -3.1346 3.4465 -4.5782 21 6 -3.7343 4.2273 -5.5438 22 6 -3.2313 5.4850 -5.8214 23 6 -2.1296 5.9483 -5.1323 24 6 -1.5234 5.1621 -4.1617 25 6 -0.3174 5.7251 -3.4526 26 7 0.0187 4.8795 -2.3022 27 6 0.3313 5.4156 -1.1057 28 6 0.2147 6.9028 -0.8929 29 8 0.7064 4.7009 -0.2004 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 1.8932 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.8295 -0.0620 2.9493 36 1 -2.0366 3.0700 -1.9232 37 1 -1.4392 1.9832 -3.1952 38 1 -3.5285 2.4641 -4.3635 39 1 -4.5941 3.8571 -6.0825 40 1 -3.6987 6.1018 -6.5747 41 1 -1.7361 6.9305 -5.3491 42 1 -0.5381 6.7354 -3.1080 43 1 0.5272 5.7532 -4.1411 44 1 1.1309 7.3905 -1.2259 45 1 -0.6299 7.2867 -1.4649 46 1 0.0588 7.1071 0.1664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188061029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:23 Heat of formation + Delta-G solvation = -107.981556 kcal Electronic energy + Delta-G solvation = -29607.421843 eV Core-core repulsion = 25654.448978 eV Total energy + Delta-G solvation = -3952.972865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25810 -40.65812 -39.95404 -37.62669 -37.02558 -35.47000 -34.30547 -33.37571 -32.43727 -31.49560 -29.89257 -29.27823 -26.75316 -26.16206 -25.02408 -23.22527 -22.70866 -22.08198 -21.40822 -19.78869 -19.04456 -18.54443 -18.09421 -17.85916 -17.14574 -16.78113 -16.56134 -16.43714 -16.03698 -15.71239 -15.69513 -15.16189 -14.88819 -14.73882 -14.60447 -14.16338 -14.11552 -13.77455 -13.65621 -13.36864 -13.35434 -13.26548 -13.15920 -13.08435 -12.98460 -12.79631 -12.56791 -12.49766 -12.15898 -12.12952 -11.89626 -11.79083 -11.43592 -11.07927 -10.86610 -10.67049 -10.49866 -10.00055 -9.60515 -9.49432 -8.28252 -6.45000 0.41400 0.48407 1.24848 1.36853 1.39040 1.52414 1.54151 1.97413 2.10987 2.38691 2.83487 3.00372 3.51268 3.65235 3.68937 3.74009 3.90172 4.02184 4.06835 4.25009 4.32960 4.34706 4.36772 4.40381 4.45456 4.53388 4.55208 4.61933 4.71886 4.72359 4.77178 4.84800 4.99307 5.04719 5.10204 5.14371 5.18425 5.22247 5.39227 5.50190 5.57385 5.63454 5.66248 5.68914 6.01196 6.11153 6.20941 6.29352 6.60924 7.03003 7.16717 7.31254 8.79294 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018571 B = 0.003448 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.376558 B = 8117.912240 C = 8860.902241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 C 0.236 3.764 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.266 1.266 13 O -0.373 6.373 14 C 0.464 3.536 15 O -0.525 6.525 16 C 0.154 3.846 17 H 0.116 0.884 18 C -0.075 4.075 19 C -0.083 4.083 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.108 4.108 25 C 0.147 3.853 26 N -0.607 5.607 27 C 0.485 3.515 28 C -0.155 4.155 29 O -0.567 6.567 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.270 0.730 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.184 14.471 -19.695 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.183 3.817 4 H 0.012 0.988 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.191 1.191 13 O -0.290 6.290 14 C 0.308 3.692 15 O -0.413 6.413 16 C 0.050 3.950 17 H 0.134 0.866 18 C -0.113 4.113 19 C -0.084 4.084 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.125 4.125 24 C -0.109 4.109 25 C 0.027 3.973 26 N -0.344 5.344 27 C 0.276 3.724 28 C -0.214 4.214 29 O -0.446 6.446 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.125 0.875 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.146 13.993 -18.688 26.793 hybrid contribution 0.752 -0.636 0.969 1.382 sum -12.394 13.357 -17.719 25.416 Atomic orbital electron populations 1.21671 0.96241 1.00501 0.99846 1.21862 0.94564 0.98007 1.02256 1.20174 0.94213 0.88791 0.78509 0.98790 1.21347 0.90687 1.39636 1.06878 0.92295 1.25875 1.04614 0.93904 0.94200 1.70044 1.37405 1.38115 1.09866 0.85128 0.77324 0.78551 0.78314 1.18871 1.20138 1.19056 1.86366 1.36271 1.63760 1.42596 1.23163 0.80038 0.76202 0.89830 1.90553 1.56570 1.58153 1.36053 1.20831 0.98783 0.81964 0.93468 0.86608 1.20692 0.91918 1.00104 0.98564 1.19315 0.97261 0.94760 0.97033 1.21306 0.95632 1.00899 0.96915 1.21389 1.00328 0.94928 0.97254 1.21471 0.96354 0.96038 0.99976 1.21312 0.95883 1.00529 0.94759 1.19936 0.97930 0.94173 0.98874 1.21040 0.95648 0.94844 0.85748 1.48219 1.69723 1.04374 1.12128 1.22128 0.75828 0.93638 0.80817 1.21951 1.06780 0.87155 1.05504 1.90974 1.47062 1.63138 1.43410 0.91630 0.95252 0.94428 0.93393 0.89679 0.92084 0.91314 0.88510 0.85658 0.83978 0.83089 0.82417 0.84505 0.87539 0.86148 0.86177 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.57 71.98 0.62 -5.41 16 2 C -0.13 -7.10 5.49 30.59 0.17 -6.93 16 3 C 0.24 14.43 2.25 29.85 0.07 14.50 16 4 H -0.01 -0.41 7.16 -2.39 -0.02 -0.42 16 5 C -0.55 -34.25 8.90 25.60 0.23 -34.03 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 7 C 0.01 0.79 5.29 84.65 0.45 1.23 16 8 N -0.92 -56.41 11.29 21.45 0.24 -56.16 16 9 Si 0.98 45.97 29.54 68.60 2.03 47.99 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 O -0.37 -20.46 9.81 -50.87 -0.50 -20.96 16 14 C 0.46 22.26 3.24 71.24 0.23 22.49 16 15 O -0.52 -28.51 11.26 29.85 0.34 -28.18 16 16 C 0.15 5.23 3.35 44.20 0.15 5.38 16 17 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 18 C -0.07 -2.12 5.19 29.91 0.16 -1.96 16 19 C -0.08 -1.80 5.76 -19.85 -0.11 -1.92 16 20 C -0.13 -2.36 9.59 22.37 0.21 -2.15 16 21 C -0.12 -1.64 10.04 22.20 0.22 -1.42 16 22 C -0.12 -1.31 10.05 22.21 0.22 -1.08 16 23 C -0.11 -1.18 9.62 22.35 0.22 -0.97 16 24 C -0.11 -1.83 5.82 -19.82 -0.12 -1.94 16 25 C 0.15 2.29 6.10 85.63 0.52 2.81 16 26 N -0.61 -17.19 2.93 -803.35 -2.35 -19.54 16 27 C 0.48 16.46 7.70 87.65 0.68 17.13 16 28 C -0.16 -3.01 9.43 71.23 0.67 -2.34 16 29 O -0.57 -28.36 12.67 21.33 0.27 -28.09 16 30 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.03 1.51 7.80 -2.38 -0.02 1.49 16 32 H 0.04 1.71 6.06 -2.39 -0.01 1.70 16 33 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.08 5.06 5.95 -2.39 -0.01 5.05 16 35 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 37 H 0.10 2.50 8.11 -2.39 -0.02 2.49 16 38 H 0.13 2.10 8.05 -2.91 -0.02 2.07 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.16 0.68 8.05 -2.91 -0.02 0.65 16 42 H 0.14 1.14 5.63 -2.38 -0.01 1.13 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.12 1.32 6.40 -2.39 -0.02 1.31 16 46 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -89.78 367.08 5.59 -84.19 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.99 Total: 17.34 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.58 Total: 3.41 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.11 Total: -75.70 kcal Atomic # 8 Polarization: -77.33 SS G_CDS: 0.11 Total: -77.23 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -89.78 5.59 -84.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188061029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.793 kcal (2) G-P(sol) polarization free energy of solvation -89.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds