Wall clock time and date at job start Tue Mar 31 2020 17:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.63957 * 2 1 4 4 C 1.55160 * 110.71950 * 236.86340 * 2 1 3 5 5 C 1.54907 * 101.57938 * 276.96113 * 4 2 1 6 6 N 1.47421 * 104.83373 * 322.98889 * 5 4 2 7 7 C 1.34783 * 125.65157 * 204.09844 * 6 5 4 8 8 O 1.21717 * 119.99905 * 180.02562 * 7 6 5 9 9 C 1.46256 * 119.99390 * 359.74266 * 7 6 5 10 10 C 1.35023 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.46964 * 120.00314 * 180.02562 * 10 9 7 12 12 C 1.40027 * 120.09574 * 359.72859 * 11 10 9 13 13 C 1.37604 * 119.89400 * 179.69434 * 12 11 10 14 14 C 1.39170 * 120.10144 * 0.58550 * 13 12 11 15 15 O 1.35575 * 119.90206 * 179.74007 * 14 13 12 16 16 C 1.34783 * 116.99928 * 174.42026 * 15 14 13 17 17 H 1.07991 * 120.00130 * 5.05369 * 16 15 14 18 18 C 1.38718 * 119.99162 * 185.05485 * 16 15 14 19 19 N 1.31510 * 119.99489 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47304 * 89.99758 * 20 18 16 22 22 H 1.48500 * 109.47553 * 210.00214 * 20 18 16 23 23 H 1.48508 * 109.47038 * 329.99948 * 20 18 16 24 24 C 1.39184 * 120.20411 * 359.71091 * 14 13 12 25 25 C 1.37603 * 120.09873 * 359.97438 * 24 14 13 26 26 C 1.47018 * 108.70349 * 24.35795 * 6 5 4 27 27 H 1.08998 * 109.88558 * 239.29477 * 26 6 5 28 28 C 1.52996 * 109.88517 * 118.13020 * 26 6 5 29 29 O 1.42898 * 109.47304 * 66.45238 * 28 26 6 30 30 H 1.09000 * 109.47073 * 181.68487 * 1 2 3 31 31 H 1.09003 * 109.47154 * 301.68103 * 1 2 3 32 32 H 1.08996 * 109.47353 * 61.68655 * 1 2 3 33 33 H 1.08994 * 111.00283 * 158.88233 * 4 2 1 34 34 H 1.09001 * 111.03802 * 35.04751 * 4 2 1 35 35 H 1.09008 * 110.36315 * 204.15375 * 5 4 2 36 36 H 1.08998 * 110.46175 * 81.87765 * 5 4 2 37 37 H 1.08003 * 120.00413 * 0.02562 * 9 7 6 38 38 H 1.08003 * 119.99910 * 0.02562 * 10 9 7 39 39 H 1.07997 * 120.05510 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.94938 * 180.29391 * 13 12 11 41 41 H 0.97002 * 120.00036 * 179.97438 * 19 18 16 42 42 H 1.07995 * 119.95080 * 180.02562 * 24 14 13 43 43 H 1.08002 * 120.04762 * 180.02562 * 25 24 14 44 44 H 1.08994 * 109.47548 * 186.45656 * 28 26 6 45 45 H 1.09002 * 109.47050 * 306.45925 * 28 26 6 46 46 H 0.96698 * 114.00226 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7933 -1.2152 5 6 2.0169 -2.2492 -0.6898 6 7 2.3780 -2.1516 0.7362 7 6 2.8951 -3.1455 1.4855 8 8 3.1557 -2.9509 2.6584 9 6 3.1371 -4.4595 0.8906 10 6 3.6556 -5.4550 1.6411 11 6 3.8994 -6.7753 1.0434 12 6 3.5895 -7.0047 -0.3027 13 6 3.8253 -8.2407 -0.8598 14 6 4.3597 -9.2653 -0.0843 15 8 4.5855 -10.4830 -0.6359 16 6 5.2101 -11.3969 0.1332 17 1 5.4332 -11.1719 1.1655 18 6 5.5662 -12.6263 -0.4016 19 7 6.1761 -13.5177 0.3485 20 14 5.1809 -13.0150 -2.1876 21 1 6.3190 -12.5925 -3.0429 22 1 4.9625 -14.4759 -2.3403 23 1 3.9547 -12.2855 -2.5995 24 6 4.6635 -9.0437 1.2558 25 6 4.4371 -7.8091 1.8197 26 6 2.0748 -0.7923 1.2072 27 1 2.9825 -0.3181 1.5803 28 6 1.0207 -0.8484 2.3147 29 8 1.5708 -1.4960 3.4636 30 1 -0.3633 -1.0272 0.0302 31 1 -0.3633 0.5397 0.8745 32 1 -0.3634 0.4874 -0.9047 33 1 3.1050 -0.5025 -1.4404 34 1 1.4384 -0.6652 -2.0878 35 1 2.7344 -2.8750 -1.2208 36 1 1.0098 -2.6513 -0.7995 37 1 2.9019 -4.6333 -0.1490 38 1 3.8912 -5.2811 2.6807 39 1 3.1702 -6.2116 -0.9040 40 1 3.5910 -8.4172 -1.8991 41 1 6.4248 -14.3776 -0.0252 42 1 5.0784 -9.8416 1.8537 43 1 4.6736 -7.6379 2.8595 44 1 0.7172 0.1645 2.5791 45 1 0.1535 -1.4074 1.9630 46 1 0.9563 -1.5674 4.2068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189435187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:45 Heat of formation + Delta-G solvation = -63.252970 kcal Electronic energy + Delta-G solvation = -27362.728375 eV Core-core repulsion = 23411.695087 eV Total energy + Delta-G solvation = -3951.033288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46480 -39.32244 -37.95190 -36.92238 -36.31978 -33.25957 -32.91734 -32.38675 -30.62647 -30.49546 -28.62635 -27.32079 -25.58444 -25.19591 -23.64906 -22.39136 -22.05941 -20.58994 -19.43790 -18.59076 -17.96454 -17.52134 -17.37253 -17.09875 -16.54308 -15.33870 -15.02147 -14.81024 -14.72964 -14.40439 -14.18842 -14.03179 -13.93337 -13.80105 -13.62514 -13.05493 -12.97623 -12.81576 -12.61272 -12.48306 -12.39277 -12.27391 -11.90693 -11.79252 -11.72365 -11.28263 -11.15372 -11.12018 -10.99916 -10.88413 -10.71903 -10.25081 -10.00472 -9.57259 -9.52074 -9.48676 -8.89329 -8.58730 -8.43557 -7.19339 -6.57548 -4.21480 1.08863 2.06289 2.56959 3.01024 3.13476 3.17261 3.30578 3.66802 3.89187 4.07341 4.10995 4.34200 4.47245 4.57735 4.66573 4.81533 4.88642 4.92651 4.96667 5.04763 5.09087 5.12014 5.20082 5.24224 5.27223 5.41186 5.46954 5.52098 5.58374 5.61976 5.63027 5.66408 5.73571 5.91509 5.97086 6.06986 6.24024 6.33770 6.55936 6.60949 6.71736 6.97516 7.12537 7.21251 7.45090 7.63548 7.65464 7.66950 7.87231 8.52266 8.75952 9.36606 10.48879 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002060 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.705649 B =13590.334200 C =14431.316067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.100 3.900 6 N -0.618 5.618 7 C 0.562 3.438 8 O -0.513 6.513 9 C -0.268 4.268 10 C 0.027 3.973 11 C -0.185 4.185 12 C -0.047 4.047 13 C -0.199 4.199 14 C 0.172 3.828 15 O -0.204 6.204 16 C -0.392 4.392 17 H 0.110 0.890 18 C 0.065 3.935 19 N -0.868 5.868 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.229 4.229 25 C -0.039 4.039 26 C 0.145 3.855 27 H 0.077 0.923 28 C 0.065 3.935 29 O -0.536 6.536 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 25.641 -2.589 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.167 4.167 5 C -0.023 4.023 6 N -0.354 5.354 7 C 0.355 3.645 8 O -0.389 6.389 9 C -0.289 4.289 10 C 0.007 3.993 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.218 4.218 14 C 0.118 3.882 15 O -0.107 6.107 16 C -0.466 4.466 17 H 0.128 0.872 18 C -0.140 4.140 19 N -0.504 5.504 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.248 4.248 25 C -0.057 4.057 26 C 0.041 3.959 27 H 0.095 0.905 28 C -0.014 4.014 29 O -0.339 6.339 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.594 25.261 -2.499 27.506 hybrid contribution -0.611 -0.299 -0.376 0.777 sum -11.205 24.962 -2.875 27.512 Atomic orbital electron populations 1.21905 0.94145 1.02411 1.02156 1.22183 0.96466 0.99286 0.93794 0.89155 1.22862 1.02168 0.94319 0.97364 1.22291 1.00690 0.97408 0.81944 1.48361 1.65063 1.11273 1.10747 1.18052 0.77049 0.83818 0.85585 1.90860 1.50397 1.82314 1.15304 1.22538 1.12164 0.93198 1.01007 1.22275 0.87856 0.90502 0.98619 1.18540 1.11571 0.93772 0.94685 1.20869 0.96405 0.95498 0.93775 1.20134 1.09435 0.92299 0.99940 1.19353 0.92250 0.85029 0.91559 1.83505 1.66805 1.18224 1.42176 1.20868 1.35954 0.93731 0.96093 0.87230 1.24537 0.95013 0.94303 1.00128 1.69620 1.36922 1.06894 1.36994 0.86156 0.80180 0.77664 0.82806 1.19669 1.20559 1.18227 1.21225 1.09281 0.98634 0.95663 1.21042 0.94346 0.91885 0.98423 1.21477 0.97770 0.83740 0.92959 0.90477 1.22624 0.95577 0.95712 0.87496 1.86993 1.41637 1.81038 1.24193 0.92095 0.92138 0.92051 0.90349 0.89622 0.90293 0.91623 0.86218 0.85812 0.86389 0.86176 0.90711 0.84528 0.86542 0.93613 0.93677 0.79072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.92 37.16 0.29 -0.46 16 2 C -0.10 -0.61 3.55 -88.78 -0.32 -0.92 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.13 -0.76 6.58 -24.58 -0.16 -0.92 16 5 C 0.10 0.82 6.20 -2.53 -0.02 0.80 16 6 N -0.62 -7.18 3.06 -164.70 -0.50 -7.69 16 7 C 0.56 8.51 7.51 -13.04 -0.10 8.41 16 8 O -0.51 -9.45 13.52 -18.93 -0.26 -9.71 16 9 C -0.27 -3.83 8.85 -37.50 -0.33 -4.16 16 10 C 0.03 0.42 9.45 -37.19 -0.35 0.07 16 11 C -0.18 -3.13 5.87 -105.03 -0.62 -3.75 16 12 C -0.05 -0.78 9.40 -39.14 -0.37 -1.15 16 13 C -0.20 -3.75 9.97 -39.47 -0.39 -4.14 16 14 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 15 O -0.20 -5.16 8.57 0.72 0.01 -5.15 16 16 C -0.39 -10.60 9.94 30.91 0.31 -10.30 16 17 H 0.11 3.03 5.41 -52.49 -0.28 2.74 16 18 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 19 N -0.87 -24.19 13.96 55.48 0.77 -23.42 16 20 Si 0.91 20.78 28.62 -169.99 -4.86 15.92 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.23 -4.77 9.14 -39.46 -0.36 -5.13 16 25 C -0.04 -0.69 9.78 -39.15 -0.38 -1.08 16 26 C 0.14 1.43 3.22 -66.95 -0.22 1.22 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 C 0.07 0.62 5.37 37.16 0.20 0.82 16 29 O -0.54 -6.82 10.33 -59.34 -0.61 -7.43 16 30 H 0.06 0.36 6.84 -51.93 -0.36 0.01 16 31 H 0.06 0.28 6.88 -51.93 -0.36 -0.08 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.36 8.04 -51.93 -0.42 -0.06 16 35 H 0.08 0.63 7.15 -51.92 -0.37 0.25 16 36 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 37 H 0.12 1.47 4.86 -52.48 -0.26 1.22 16 38 H 0.12 1.95 7.52 -52.48 -0.39 1.56 16 39 H 0.12 1.58 6.16 -52.49 -0.32 1.25 16 40 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 41 H 0.28 7.24 8.31 -40.82 -0.34 6.91 16 42 H 0.14 2.97 5.62 -52.49 -0.29 2.67 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.05 0.33 7.47 -51.93 -0.39 -0.05 16 45 H 0.05 0.41 6.81 -51.93 -0.35 0.06 16 46 H 0.36 3.11 9.12 45.56 0.42 3.52 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -32.39 370.97 -8.49 -40.88 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.46 Total: 6.47 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -3.17 Total: -15.46 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.27 Total: -31.10 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.86 Total: -22.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.39 -8.49 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.371 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds