Wall clock time and date at job start Tue Mar 31 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.63957 * 2 1 4 4 C 1.55160 * 110.71950 * 236.86340 * 2 1 3 5 5 C 1.54907 * 101.57938 * 276.96113 * 4 2 1 6 6 N 1.47421 * 104.83373 * 322.98889 * 5 4 2 7 7 C 1.34783 * 125.65157 * 204.09844 * 6 5 4 8 8 O 1.21717 * 119.99905 * 180.02562 * 7 6 5 9 9 C 1.46256 * 119.99390 * 359.74266 * 7 6 5 10 10 C 1.35023 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.46964 * 120.00314 * 180.02562 * 10 9 7 12 12 C 1.40027 * 120.09574 * 359.72859 * 11 10 9 13 13 C 1.37604 * 119.89400 * 179.69434 * 12 11 10 14 14 C 1.39170 * 120.10144 * 0.58550 * 13 12 11 15 15 O 1.35575 * 119.90206 * 179.74007 * 14 13 12 16 16 C 1.34783 * 116.99928 * 174.42026 * 15 14 13 17 17 H 1.07991 * 120.00130 * 5.05369 * 16 15 14 18 18 C 1.38718 * 119.99162 * 185.05485 * 16 15 14 19 19 N 1.31510 * 119.99489 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47304 * 89.99758 * 20 18 16 22 22 H 1.48500 * 109.47553 * 210.00214 * 20 18 16 23 23 H 1.48508 * 109.47038 * 329.99948 * 20 18 16 24 24 C 1.39184 * 120.20411 * 359.71091 * 14 13 12 25 25 C 1.37603 * 120.09873 * 359.97438 * 24 14 13 26 26 C 1.47018 * 108.70349 * 24.35795 * 6 5 4 27 27 H 1.08998 * 109.88558 * 239.29477 * 26 6 5 28 28 C 1.52996 * 109.88517 * 118.13020 * 26 6 5 29 29 O 1.42898 * 109.47304 * 66.45238 * 28 26 6 30 30 H 1.09000 * 109.47073 * 181.68487 * 1 2 3 31 31 H 1.09003 * 109.47154 * 301.68103 * 1 2 3 32 32 H 1.08996 * 109.47353 * 61.68655 * 1 2 3 33 33 H 1.08994 * 111.00283 * 158.88233 * 4 2 1 34 34 H 1.09001 * 111.03802 * 35.04751 * 4 2 1 35 35 H 1.09008 * 110.36315 * 204.15375 * 5 4 2 36 36 H 1.08998 * 110.46175 * 81.87765 * 5 4 2 37 37 H 1.08003 * 120.00413 * 0.02562 * 9 7 6 38 38 H 1.08003 * 119.99910 * 0.02562 * 10 9 7 39 39 H 1.07997 * 120.05510 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.94938 * 180.29391 * 13 12 11 41 41 H 0.97002 * 120.00036 * 179.97438 * 19 18 16 42 42 H 1.07995 * 119.95080 * 180.02562 * 24 14 13 43 43 H 1.08002 * 120.04762 * 180.02562 * 25 24 14 44 44 H 1.08994 * 109.47548 * 186.45656 * 28 26 6 45 45 H 1.09002 * 109.47050 * 306.45925 * 28 26 6 46 46 H 0.96698 * 114.00226 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7933 -1.2152 5 6 2.0169 -2.2492 -0.6898 6 7 2.3780 -2.1516 0.7362 7 6 2.8951 -3.1455 1.4855 8 8 3.1557 -2.9509 2.6584 9 6 3.1371 -4.4595 0.8906 10 6 3.6556 -5.4550 1.6411 11 6 3.8994 -6.7753 1.0434 12 6 3.5895 -7.0047 -0.3027 13 6 3.8253 -8.2407 -0.8598 14 6 4.3597 -9.2653 -0.0843 15 8 4.5855 -10.4830 -0.6359 16 6 5.2101 -11.3969 0.1332 17 1 5.4332 -11.1719 1.1655 18 6 5.5662 -12.6263 -0.4016 19 7 6.1761 -13.5177 0.3485 20 14 5.1809 -13.0150 -2.1876 21 1 6.3190 -12.5925 -3.0429 22 1 4.9625 -14.4759 -2.3403 23 1 3.9547 -12.2855 -2.5995 24 6 4.6635 -9.0437 1.2558 25 6 4.4371 -7.8091 1.8197 26 6 2.0748 -0.7923 1.2072 27 1 2.9825 -0.3181 1.5803 28 6 1.0207 -0.8484 2.3147 29 8 1.5708 -1.4960 3.4636 30 1 -0.3633 -1.0272 0.0302 31 1 -0.3633 0.5397 0.8745 32 1 -0.3634 0.4874 -0.9047 33 1 3.1050 -0.5025 -1.4404 34 1 1.4384 -0.6652 -2.0878 35 1 2.7344 -2.8750 -1.2208 36 1 1.0098 -2.6513 -0.7995 37 1 2.9019 -4.6333 -0.1490 38 1 3.8912 -5.2811 2.6807 39 1 3.1702 -6.2116 -0.9040 40 1 3.5910 -8.4172 -1.8991 41 1 6.4248 -14.3776 -0.0252 42 1 5.0784 -9.8416 1.8537 43 1 4.6736 -7.6379 2.8595 44 1 0.7172 0.1645 2.5791 45 1 0.1535 -1.4074 1.9630 46 1 0.9563 -1.5674 4.2068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189435187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:44 Heat of formation + Delta-G solvation = -83.427298 kcal Electronic energy + Delta-G solvation = -27363.603199 eV Core-core repulsion = 23411.695087 eV Total energy + Delta-G solvation = -3951.908113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33439 -40.93216 -39.07893 -38.42340 -37.15537 -34.75508 -34.22875 -33.69778 -32.01562 -31.30733 -29.96562 -28.15622 -27.33011 -25.85333 -24.81744 -23.83389 -23.17076 -21.70788 -20.40643 -19.93894 -19.31839 -19.02052 -18.56040 -18.03673 -17.39684 -16.73389 -16.43935 -16.07964 -15.79113 -15.67395 -15.39048 -15.33822 -15.20240 -14.93142 -14.47655 -14.39653 -14.24167 -14.10799 -13.75940 -13.55370 -13.38278 -13.23768 -13.00523 -12.94247 -12.73434 -12.65075 -12.53067 -12.34380 -11.93540 -11.81759 -11.61199 -11.42144 -11.31198 -11.14754 -10.81277 -10.67922 -10.64194 -9.92832 -9.52501 -8.73560 -8.53603 -6.25518 -0.25832 0.53878 1.13995 1.32584 1.37950 1.52660 2.10698 2.26472 2.45008 2.80671 2.99823 3.14792 3.25510 3.50428 3.71359 3.83036 3.91433 4.03589 4.06869 4.21045 4.27562 4.29597 4.33764 4.42929 4.44254 4.45966 4.54982 4.62092 4.69421 4.76461 4.82766 4.92367 4.99638 5.11075 5.13838 5.18674 5.20915 5.22526 5.27152 5.36068 5.46297 5.52443 5.65514 5.69778 5.79493 5.82925 6.13700 6.66389 6.79371 6.96278 7.39928 7.50391 8.57259 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.002060 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.705649 B =13590.334200 C =14431.316067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.105 0.895 4 C -0.122 4.122 5 C 0.088 3.912 6 N -0.615 5.615 7 C 0.549 3.451 8 O -0.553 6.553 9 C -0.233 4.233 10 C 0.005 3.995 11 C -0.158 4.158 12 C -0.041 4.041 13 C -0.191 4.191 14 C 0.136 3.864 15 O -0.232 6.232 16 C -0.404 4.404 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.242 4.242 25 C -0.047 4.047 26 C 0.134 3.866 27 H 0.053 0.947 28 C 0.063 3.937 29 O -0.570 6.570 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.141 0.859 41 H 0.286 0.714 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 29.603 -5.308 33.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.123 0.877 4 C -0.159 4.159 5 C -0.034 4.034 6 N -0.349 5.349 7 C 0.341 3.659 8 O -0.433 6.433 9 C -0.253 4.253 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.058 4.058 13 C -0.210 4.210 14 C 0.086 3.914 15 O -0.139 6.139 16 C -0.480 4.480 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.261 4.261 25 C -0.065 4.065 26 C 0.030 3.970 27 H 0.072 0.928 28 C -0.015 4.015 29 O -0.376 6.376 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.929 29.304 -5.233 32.455 hybrid contribution -0.061 -0.908 0.624 1.104 sum -12.991 28.396 -4.609 31.565 Atomic orbital electron populations 1.21894 0.92997 1.02177 1.03276 1.22199 0.97252 0.99400 0.91915 0.87659 1.22883 1.02837 0.92354 0.97873 1.22630 1.01539 0.99445 0.79754 1.48443 1.63159 1.11176 1.12145 1.18260 0.77377 0.84802 0.85423 1.90854 1.52189 1.83116 1.17129 1.22833 1.08368 0.92260 1.01847 1.22124 0.90305 0.90208 0.98852 1.18805 1.08433 0.93748 0.94857 1.21311 0.95247 0.95596 0.93693 1.20481 1.07860 0.91968 1.00707 1.19915 0.93712 0.85274 0.92520 1.83460 1.69176 1.19195 1.42038 1.20753 1.36896 0.94834 0.95509 0.89929 1.25354 0.95053 0.94068 1.04366 1.69708 1.39451 1.07668 1.38879 0.85188 0.79862 0.77866 0.77648 1.18947 1.19265 1.18293 1.21220 1.09955 0.99335 0.95623 1.21267 0.94454 0.91076 0.99738 1.21751 0.97244 0.83167 0.94848 0.92850 1.22767 0.95374 0.96822 0.86569 1.86954 1.43304 1.81683 1.25621 0.92910 0.91802 0.90294 0.90372 0.87041 0.89570 0.90276 0.83328 0.86378 0.81927 0.84149 0.90382 0.86848 0.84565 0.91286 0.93188 0.77572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.92 71.98 0.57 -0.31 16 2 C -0.09 -0.76 3.55 -9.60 -0.03 -0.79 16 3 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.12 -0.88 6.58 31.99 0.21 -0.67 16 5 C 0.09 1.05 6.20 86.86 0.54 1.59 16 6 N -0.61 -12.53 3.06 -793.19 -2.43 -14.96 16 7 C 0.55 15.39 7.51 86.33 0.65 16.04 16 8 O -0.55 -20.01 13.52 18.65 0.25 -19.75 16 9 C -0.23 -5.79 8.85 23.61 0.21 -5.58 16 10 C 0.00 0.14 9.45 23.82 0.23 0.37 16 11 C -0.16 -4.96 5.87 -20.13 -0.12 -5.08 16 12 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 13 C -0.19 -6.82 9.97 22.34 0.22 -6.59 16 14 C 0.14 6.15 6.66 22.72 0.15 6.31 16 15 O -0.23 -12.19 8.57 -20.33 -0.17 -12.37 16 16 C -0.40 -23.28 9.94 67.93 0.68 -22.60 16 17 H 0.08 5.01 5.41 -2.92 -0.02 4.99 16 18 C 0.01 0.62 5.49 84.86 0.47 1.09 16 19 N -0.92 -53.90 13.96 21.62 0.30 -53.60 16 20 Si 0.97 44.02 28.62 68.60 1.96 45.98 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 C -0.24 -10.53 9.14 22.35 0.20 -10.32 16 25 C -0.05 -1.69 9.78 22.55 0.22 -1.47 16 26 C 0.13 2.34 3.22 45.34 0.15 2.49 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 C 0.06 1.08 5.37 71.98 0.39 1.47 16 29 O -0.57 -14.13 10.33 -125.93 -1.30 -15.43 16 30 H 0.05 0.42 6.84 -2.39 -0.02 0.40 16 31 H 0.06 0.35 6.88 -2.39 -0.02 0.34 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.31 8.04 -2.39 -0.02 0.29 16 35 H 0.09 0.92 7.15 -2.38 -0.02 0.91 16 36 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 37 H 0.15 2.78 4.86 -2.91 -0.01 2.77 16 38 H 0.12 3.59 7.52 -2.91 -0.02 3.57 16 39 H 0.16 3.30 6.16 -2.91 -0.02 3.28 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 5.41 5.62 -2.91 -0.02 5.39 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.07 0.84 7.47 -2.39 -0.02 0.82 16 45 H 0.05 0.80 6.81 -2.39 -0.02 0.78 16 46 H 0.38 6.27 9.12 -74.06 -0.68 5.60 16 Total: -1.00 -75.67 370.97 3.89 -71.79 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.34 Total: 23.38 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 4.93 Total: -25.04 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -2.13 Total: -68.56 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.22 Total: -47.55 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.96 Total: 45.98 kcal Total: -75.67 3.89 -71.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.642 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds