Wall clock time and date at job start Tue Mar 31 2020 17:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.64504 * 2 1 4 4 C 1.55162 * 110.87285 * 123.24803 * 2 1 3 5 5 C 1.54908 * 101.58252 * 153.93461 * 4 2 1 6 6 N 1.47420 * 104.83209 * 322.99050 * 5 4 2 7 7 C 1.34779 * 125.64896 * 204.09201 * 6 5 4 8 8 O 1.21718 * 120.00247 * 180.02562 * 7 6 5 9 9 C 1.46253 * 119.99624 * 0.04610 * 7 6 5 10 10 C 1.35021 * 119.99732 * 180.02562 * 9 7 6 11 11 C 1.46961 * 120.00057 * 179.97438 * 10 9 7 12 12 C 1.40025 * 120.09893 * 359.72653 * 11 10 9 13 13 C 1.37600 * 119.89498 * 179.74235 * 12 11 10 14 14 C 1.39177 * 120.10253 * 0.50729 * 13 12 11 15 15 O 1.35572 * 119.89823 * 179.74616 * 14 13 12 16 16 C 1.34787 * 116.99970 * 174.47147 * 15 14 13 17 17 H 1.08001 * 119.99871 * 5.04651 * 16 15 14 18 18 C 1.38720 * 120.00119 * 185.05931 * 16 15 14 19 19 N 1.31503 * 119.99957 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47188 * 90.00453 * 20 18 16 22 22 H 1.48508 * 109.46803 * 210.00560 * 20 18 16 23 23 H 1.48502 * 109.47004 * 329.99913 * 20 18 16 24 24 C 1.39178 * 120.20481 * 359.76483 * 14 13 12 25 25 C 1.37599 * 120.09977 * 359.97438 * 24 14 13 26 26 C 1.47022 * 108.70353 * 24.13004 * 6 5 4 27 27 H 1.09004 * 109.88078 * 239.52209 * 26 6 5 28 28 C 1.53006 * 110.01069 * 118.43038 * 26 6 5 29 29 O 1.42895 * 109.47200 * 67.11480 * 28 26 6 30 30 H 1.08997 * 109.47674 * 180.70345 * 1 2 3 31 31 H 1.09003 * 109.47012 * 300.70636 * 1 2 3 32 32 H 1.09001 * 109.47211 * 60.69738 * 1 2 3 33 33 H 1.09002 * 111.00286 * 272.01342 * 4 2 1 34 34 H 1.09004 * 111.00007 * 35.85654 * 4 2 1 35 35 H 1.09001 * 110.36689 * 204.15060 * 5 4 2 36 36 H 1.09004 * 110.36663 * 81.83115 * 5 4 2 37 37 H 1.07996 * 120.00556 * 359.97438 * 9 7 6 38 38 H 1.07997 * 120.00416 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.05151 * 359.97410 * 12 11 10 40 40 H 1.07996 * 119.95010 * 180.22748 * 13 12 11 41 41 H 0.97006 * 120.00043 * 179.97438 * 19 18 16 42 42 H 1.07994 * 119.95008 * 179.97438 * 24 14 13 43 43 H 1.08000 * 120.05381 * 180.02562 * 25 24 14 44 44 H 1.09001 * 109.46775 * 187.11056 * 28 26 6 45 45 H 1.09001 * 109.46909 * 307.10890 * 28 26 6 46 46 H 0.96696 * 114.00100 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0828 -0.7949 1.2125 5 6 3.4673 -1.2456 0.6837 6 7 3.2470 -1.5462 -0.7426 7 6 3.9956 -2.3768 -1.4950 8 8 3.7201 -2.5502 -2.6679 9 6 5.1386 -3.0702 -0.9021 10 6 5.8889 -3.9019 -1.6560 11 6 7.0379 -4.5983 -1.0604 12 6 7.3598 -4.3964 0.2873 13 6 8.4333 -5.0546 0.8421 14 6 9.2049 -5.9119 0.0632 15 8 10.2647 -6.5543 0.6127 16 6 10.9016 -7.4563 -0.1604 17 1 10.6137 -7.5807 -1.1939 18 6 11.9266 -8.2250 0.3715 19 7 12.5475 -9.1053 -0.3827 20 14 12.4247 -8.0095 2.1589 21 1 11.6281 -8.9302 3.0092 22 1 13.8689 -8.3200 2.3111 23 1 12.1732 -6.6070 2.5772 24 6 8.8921 -6.1113 -1.2783 25 6 7.8173 -5.4615 -1.8402 26 6 2.0759 -0.7892 -1.2085 27 1 1.3139 -1.4754 -1.5780 28 6 2.4867 0.1791 -2.3197 29 8 2.8809 -0.5622 -3.4759 30 1 -0.3634 -1.0275 0.0126 31 1 -0.3633 0.5248 0.8836 32 1 -0.3634 0.5030 -0.8962 33 1 2.1885 -0.1515 2.0860 34 1 1.4513 -1.6546 1.4367 35 1 3.8030 -2.1379 1.2121 36 1 4.1954 -0.4419 0.7940 37 1 5.3831 -2.9164 0.1385 38 1 5.6448 -4.0555 -2.6967 39 1 6.7642 -3.7279 0.8914 40 1 8.6802 -4.9023 1.8824 41 1 13.2645 -9.6426 -0.0109 42 1 9.4939 -6.7771 -1.8790 43 1 7.5750 -5.6172 -2.8811 44 1 1.6436 0.8227 -2.5708 45 1 3.3217 0.7909 -1.9782 46 1 3.1552 -0.0113 -4.2218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189435209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:49 Heat of formation + Delta-G solvation = -66.979002 kcal Electronic energy + Delta-G solvation = -27222.040150 eV Core-core repulsion = 23270.845289 eV Total energy + Delta-G solvation = -3951.194861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34014 -39.31840 -37.87528 -36.91566 -36.34888 -33.30970 -32.99131 -32.39561 -30.57022 -30.49388 -28.77063 -27.70100 -25.61114 -24.26570 -23.61598 -22.38693 -22.06208 -20.85169 -19.88663 -18.59571 -17.88241 -17.40462 -17.32002 -16.96737 -16.69691 -15.34657 -15.02441 -14.84028 -14.64609 -14.39556 -14.11901 -14.01462 -13.93584 -13.69100 -13.65222 -13.39060 -12.96364 -12.81889 -12.59272 -12.41030 -12.32897 -12.13950 -11.88786 -11.81238 -11.73637 -11.30187 -11.20056 -11.10274 -11.05120 -10.99726 -10.71965 -10.25145 -10.05095 -9.57413 -9.52280 -9.49047 -8.89445 -8.59394 -8.43611 -7.19376 -6.57567 -4.21500 1.08682 2.06292 2.56801 3.00005 3.13450 3.17226 3.30560 3.66245 3.86405 4.09205 4.10950 4.35814 4.47207 4.57147 4.66527 4.83867 4.92368 4.94666 4.96646 5.02800 5.08366 5.12284 5.17687 5.20508 5.29366 5.39328 5.46957 5.53599 5.56781 5.60222 5.64793 5.67036 5.72118 5.93653 5.97180 6.06935 6.23438 6.33713 6.55851 6.60748 6.71696 6.97462 7.12496 7.21187 7.45036 7.62195 7.65140 7.66555 7.87163 8.51706 8.75940 9.36540 10.48828 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.002022 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.263291 B =13843.437186 C =14693.600467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.099 3.901 6 N -0.619 5.619 7 C 0.562 3.438 8 O -0.513 6.513 9 C -0.268 4.268 10 C 0.027 3.973 11 C -0.185 4.185 12 C -0.047 4.047 13 C -0.199 4.199 14 C 0.172 3.828 15 O -0.204 6.204 16 C -0.392 4.392 17 H 0.110 0.890 18 C 0.065 3.935 19 N -0.868 5.868 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.229 4.229 25 C -0.039 4.039 26 C 0.144 3.856 27 H 0.079 0.921 28 C 0.066 3.934 29 O -0.534 6.534 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.137 0.863 43 H 0.117 0.883 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 19.222 2.661 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.356 5.356 7 C 0.355 3.645 8 O -0.389 6.389 9 C -0.289 4.289 10 C 0.008 3.992 11 C -0.186 4.186 12 C -0.065 4.065 13 C -0.218 4.218 14 C 0.118 3.882 15 O -0.107 6.107 16 C -0.467 4.467 17 H 0.128 0.872 18 C -0.140 4.140 19 N -0.504 5.504 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.248 4.248 25 C -0.057 4.057 26 C 0.040 3.960 27 H 0.097 0.903 28 C -0.014 4.014 29 O -0.337 6.337 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -20.537 18.358 2.569 27.666 hybrid contribution 0.539 0.503 0.364 0.822 sum -19.998 18.861 2.933 27.646 Atomic orbital electron populations 1.21769 0.93549 1.02490 1.02172 1.22184 0.96484 0.99345 0.93765 0.89636 1.22883 0.96048 1.00391 0.97371 1.22298 0.97220 1.00976 0.81902 1.48363 1.30414 1.45986 1.10788 1.18058 0.82469 0.78401 0.85583 1.90862 1.70395 1.62322 1.15337 1.22534 0.99692 1.05718 1.00981 1.22273 0.89582 0.88726 0.98651 1.18541 0.99868 1.05537 0.94631 1.20868 0.95168 0.96717 0.93782 1.20136 0.98536 1.03235 0.99913 1.19354 0.86187 0.91075 0.91578 1.83505 1.36672 1.48475 1.42053 1.20870 1.15781 1.14104 0.95896 0.87230 1.24535 0.95103 0.94201 1.00128 1.69618 1.22555 1.21314 1.36927 0.86159 0.77743 0.80092 0.82826 1.19666 1.20558 1.18232 1.21222 1.01506 1.06431 0.95640 1.21045 0.92995 0.93227 0.98430 1.21553 0.88607 0.92955 0.92886 0.90304 1.22530 0.97788 0.93480 0.87553 1.86991 1.88257 1.35082 1.23371 0.92135 0.91891 0.92285 0.89707 0.90287 0.90212 0.91586 0.86201 0.85809 0.86385 0.86172 0.90709 0.84525 0.86540 0.93609 0.94088 0.79021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.14 37.15 0.34 -0.38 16 2 C -0.10 -0.62 3.06 -88.79 -0.27 -0.89 16 3 H 0.09 0.46 7.85 -51.93 -0.41 0.05 16 4 C -0.13 -0.77 6.54 -24.58 -0.16 -0.93 16 5 C 0.10 0.81 6.52 -2.53 -0.02 0.80 16 6 N -0.62 -7.26 3.07 -164.70 -0.51 -7.77 16 7 C 0.56 8.54 7.52 -13.04 -0.10 8.44 16 8 O -0.51 -9.48 13.53 -18.88 -0.26 -9.73 16 9 C -0.27 -3.83 8.85 -37.51 -0.33 -4.17 16 10 C 0.03 0.43 9.45 -37.19 -0.35 0.07 16 11 C -0.18 -3.14 5.87 -105.02 -0.62 -3.75 16 12 C -0.05 -0.78 9.40 -39.15 -0.37 -1.15 16 13 C -0.20 -3.75 9.97 -39.47 -0.39 -4.15 16 14 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 15 O -0.20 -5.15 8.57 0.72 0.01 -5.15 16 16 C -0.39 -10.60 9.94 30.91 0.31 -10.30 16 17 H 0.11 3.03 5.41 -52.49 -0.28 2.74 16 18 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 19 N -0.87 -24.18 13.96 55.48 0.77 -23.40 16 20 Si 0.91 20.78 28.62 -169.99 -4.86 15.92 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.23 -4.77 9.14 -39.47 -0.36 -5.13 16 25 C -0.04 -0.69 9.79 -39.14 -0.38 -1.08 16 26 C 0.14 1.44 2.88 -66.95 -0.19 1.24 16 27 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 28 C 0.07 0.64 6.47 37.16 0.24 0.88 16 29 O -0.53 -6.81 10.38 -59.28 -0.62 -7.42 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.48 8.05 -51.93 -0.42 0.07 16 35 H 0.08 0.63 7.14 -51.93 -0.37 0.26 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.12 1.48 4.86 -52.49 -0.25 1.22 16 38 H 0.12 1.95 7.52 -52.49 -0.39 1.56 16 39 H 0.12 1.58 6.16 -52.49 -0.32 1.25 16 40 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.14 2.97 5.62 -52.49 -0.29 2.67 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.36 3.10 9.12 45.56 0.42 3.51 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -32.42 377.11 -8.47 -40.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.68 Total: 6.24 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.01 Total: -15.25 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.27 Total: -31.17 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.86 Total: -22.30 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.86 Total: 15.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.42 -8.47 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.092 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds