Wall clock time and date at job start Tue Mar 31 2020 17:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.64504 * 2 1 4 4 C 1.55162 * 110.87285 * 123.24803 * 2 1 3 5 5 C 1.54908 * 101.58252 * 153.93461 * 4 2 1 6 6 N 1.47420 * 104.83209 * 322.99050 * 5 4 2 7 7 C 1.34779 * 125.64896 * 204.09201 * 6 5 4 8 8 O 1.21718 * 120.00247 * 180.02562 * 7 6 5 9 9 C 1.46253 * 119.99624 * 0.04610 * 7 6 5 10 10 C 1.35021 * 119.99732 * 180.02562 * 9 7 6 11 11 C 1.46961 * 120.00057 * 179.97438 * 10 9 7 12 12 C 1.40025 * 120.09893 * 359.72653 * 11 10 9 13 13 C 1.37600 * 119.89498 * 179.74235 * 12 11 10 14 14 C 1.39177 * 120.10253 * 0.50729 * 13 12 11 15 15 O 1.35572 * 119.89823 * 179.74616 * 14 13 12 16 16 C 1.34787 * 116.99970 * 174.47147 * 15 14 13 17 17 H 1.08001 * 119.99871 * 5.04651 * 16 15 14 18 18 C 1.38720 * 120.00119 * 185.05931 * 16 15 14 19 19 N 1.31503 * 119.99957 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47188 * 90.00453 * 20 18 16 22 22 H 1.48508 * 109.46803 * 210.00560 * 20 18 16 23 23 H 1.48502 * 109.47004 * 329.99913 * 20 18 16 24 24 C 1.39178 * 120.20481 * 359.76483 * 14 13 12 25 25 C 1.37599 * 120.09977 * 359.97438 * 24 14 13 26 26 C 1.47022 * 108.70353 * 24.13004 * 6 5 4 27 27 H 1.09004 * 109.88078 * 239.52209 * 26 6 5 28 28 C 1.53006 * 110.01069 * 118.43038 * 26 6 5 29 29 O 1.42895 * 109.47200 * 67.11480 * 28 26 6 30 30 H 1.08997 * 109.47674 * 180.70345 * 1 2 3 31 31 H 1.09003 * 109.47012 * 300.70636 * 1 2 3 32 32 H 1.09001 * 109.47211 * 60.69738 * 1 2 3 33 33 H 1.09002 * 111.00286 * 272.01342 * 4 2 1 34 34 H 1.09004 * 111.00007 * 35.85654 * 4 2 1 35 35 H 1.09001 * 110.36689 * 204.15060 * 5 4 2 36 36 H 1.09004 * 110.36663 * 81.83115 * 5 4 2 37 37 H 1.07996 * 120.00556 * 359.97438 * 9 7 6 38 38 H 1.07997 * 120.00416 * 359.97438 * 10 9 7 39 39 H 1.07999 * 120.05151 * 359.97410 * 12 11 10 40 40 H 1.07996 * 119.95010 * 180.22748 * 13 12 11 41 41 H 0.97006 * 120.00043 * 179.97438 * 19 18 16 42 42 H 1.07994 * 119.95008 * 179.97438 * 24 14 13 43 43 H 1.08000 * 120.05381 * 180.02562 * 25 24 14 44 44 H 1.09001 * 109.46775 * 187.11056 * 28 26 6 45 45 H 1.09001 * 109.46909 * 307.10890 * 28 26 6 46 46 H 0.96696 * 114.00100 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0828 -0.7949 1.2125 5 6 3.4673 -1.2456 0.6837 6 7 3.2470 -1.5462 -0.7426 7 6 3.9956 -2.3768 -1.4950 8 8 3.7201 -2.5502 -2.6679 9 6 5.1386 -3.0702 -0.9021 10 6 5.8889 -3.9019 -1.6560 11 6 7.0379 -4.5983 -1.0604 12 6 7.3598 -4.3964 0.2873 13 6 8.4333 -5.0546 0.8421 14 6 9.2049 -5.9119 0.0632 15 8 10.2647 -6.5543 0.6127 16 6 10.9016 -7.4563 -0.1604 17 1 10.6137 -7.5807 -1.1939 18 6 11.9266 -8.2250 0.3715 19 7 12.5475 -9.1053 -0.3827 20 14 12.4247 -8.0095 2.1589 21 1 11.6281 -8.9302 3.0092 22 1 13.8689 -8.3200 2.3111 23 1 12.1732 -6.6070 2.5772 24 6 8.8921 -6.1113 -1.2783 25 6 7.8173 -5.4615 -1.8402 26 6 2.0759 -0.7892 -1.2085 27 1 1.3139 -1.4754 -1.5780 28 6 2.4867 0.1791 -2.3197 29 8 2.8809 -0.5622 -3.4759 30 1 -0.3634 -1.0275 0.0126 31 1 -0.3633 0.5248 0.8836 32 1 -0.3634 0.5030 -0.8962 33 1 2.1885 -0.1515 2.0860 34 1 1.4513 -1.6546 1.4367 35 1 3.8030 -2.1379 1.2121 36 1 4.1954 -0.4419 0.7940 37 1 5.3831 -2.9164 0.1385 38 1 5.6448 -4.0555 -2.6967 39 1 6.7642 -3.7279 0.8914 40 1 8.6802 -4.9023 1.8824 41 1 13.2645 -9.6426 -0.0109 42 1 9.4939 -6.7771 -1.8790 43 1 7.5750 -5.6172 -2.8811 44 1 1.6436 0.8227 -2.5708 45 1 3.3217 0.7909 -1.9782 46 1 3.1552 -0.0113 -4.2218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189435209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:48 Heat of formation + Delta-G solvation = -87.036649 kcal Electronic energy + Delta-G solvation = -27222.909915 eV Core-core repulsion = 23270.845289 eV Total energy + Delta-G solvation = -3952.064626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24896 -40.91909 -39.00787 -38.39611 -37.18302 -34.75757 -34.24575 -33.78498 -32.01604 -31.25611 -30.02358 -28.62044 -27.39259 -25.15629 -24.53880 -23.83820 -23.18672 -21.76620 -20.93836 -20.05892 -19.30392 -19.02459 -18.32208 -17.98002 -17.50938 -16.71376 -16.46955 -16.06415 -15.79221 -15.66936 -15.49386 -15.27460 -15.14719 -14.83305 -14.41941 -14.27071 -14.25398 -14.12301 -14.06879 -13.59242 -13.39043 -13.22197 -13.05805 -12.73665 -12.67738 -12.63213 -12.51100 -12.35324 -11.94493 -11.88579 -11.66041 -11.54408 -11.31168 -11.14830 -10.86076 -10.69565 -10.64457 -9.92835 -9.53358 -8.73574 -8.53563 -6.25480 -0.25973 0.53927 1.13842 1.32548 1.37929 1.52622 2.09810 2.26440 2.44488 2.80645 2.99834 3.14752 3.22890 3.50596 3.72951 3.83592 3.91842 4.03666 4.05933 4.18163 4.29057 4.29265 4.33382 4.42423 4.45239 4.48323 4.56908 4.59510 4.62927 4.78866 4.82873 4.92920 5.00840 5.08956 5.11222 5.14915 5.18555 5.25595 5.29401 5.35949 5.45960 5.51906 5.64834 5.69765 5.79448 5.82926 6.13705 6.65791 6.79414 6.94956 7.39225 7.50372 8.57258 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026527 B = 0.002022 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.263291 B =13843.437186 C =14693.600467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.122 4.122 5 C 0.088 3.912 6 N -0.617 5.617 7 C 0.549 3.451 8 O -0.554 6.554 9 C -0.233 4.233 10 C 0.005 3.995 11 C -0.158 4.158 12 C -0.041 4.041 13 C -0.191 4.191 14 C 0.136 3.864 15 O -0.232 6.232 16 C -0.404 4.404 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.917 5.917 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.259 1.259 24 C -0.242 4.242 25 C -0.047 4.047 26 C 0.134 3.866 27 H 0.054 0.946 28 C 0.063 3.937 29 O -0.568 6.568 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.150 0.850 38 H 0.118 0.882 39 H 0.164 0.836 40 H 0.141 0.859 41 H 0.286 0.714 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 22.803 5.411 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.034 4.034 6 N -0.351 5.351 7 C 0.341 3.659 8 O -0.433 6.433 9 C -0.253 4.253 10 C -0.015 4.015 11 C -0.158 4.158 12 C -0.058 4.058 13 C -0.210 4.210 14 C 0.086 3.914 15 O -0.139 6.139 16 C -0.480 4.480 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.261 4.261 25 C -0.065 4.065 26 C 0.031 3.969 27 H 0.072 0.928 28 C -0.016 4.016 29 O -0.374 6.374 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.420 22.003 5.334 32.575 hybrid contribution 0.890 -0.239 -0.647 1.126 sum -22.531 21.765 4.688 31.675 Atomic orbital electron populations 1.21766 0.92689 1.02206 1.03143 1.22201 0.97061 0.99555 0.91937 0.87934 1.22906 0.94385 1.00711 0.97937 1.22646 0.99177 1.01961 0.79640 1.48458 1.29879 1.44552 1.12234 1.18271 0.83102 0.79081 0.85425 1.90855 1.71508 1.63798 1.17173 1.22829 0.97814 1.02821 1.01847 1.22123 0.90069 0.90402 0.98882 1.18806 0.98906 1.03319 0.94812 1.21311 0.94428 0.96378 0.93709 1.20484 0.98091 1.01780 1.00679 1.19919 0.86776 0.92197 0.92547 1.83460 1.38684 1.49827 1.41898 1.20753 1.16620 1.15313 0.95311 0.89933 1.25351 0.95139 0.93964 1.04371 1.69706 1.24032 1.23134 1.38808 0.85191 0.77914 0.79808 0.77664 1.18941 1.19267 1.18308 1.21217 1.02429 1.06891 0.95592 1.21271 0.92288 0.93234 0.99755 1.21819 0.87475 0.92898 0.94746 0.92787 1.22682 0.98824 0.93452 0.86648 1.86953 1.88593 1.37022 1.24800 0.93109 0.90098 0.92142 0.86917 0.90566 0.89482 0.90017 0.83273 0.86383 0.81900 0.84144 0.90382 0.86850 0.84564 0.91194 0.93589 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.14 71.98 0.66 -0.31 16 2 C -0.09 -0.77 3.06 -9.61 -0.03 -0.80 16 3 H 0.10 0.60 7.85 -2.39 -0.02 0.59 16 4 C -0.12 -0.89 6.54 31.99 0.21 -0.68 16 5 C 0.09 1.03 6.52 86.86 0.57 1.60 16 6 N -0.62 -12.64 3.07 -793.20 -2.43 -15.07 16 7 C 0.55 15.41 7.52 86.33 0.65 16.06 16 8 O -0.55 -20.04 13.53 18.59 0.25 -19.79 16 9 C -0.23 -5.78 8.85 23.61 0.21 -5.57 16 10 C 0.01 0.15 9.45 23.82 0.23 0.37 16 11 C -0.16 -4.96 5.87 -20.12 -0.12 -5.08 16 12 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 13 C -0.19 -6.82 9.97 22.34 0.22 -6.60 16 14 C 0.14 6.15 6.66 22.72 0.15 6.30 16 15 O -0.23 -12.19 8.57 -20.34 -0.17 -12.37 16 16 C -0.40 -23.28 9.94 67.94 0.68 -22.60 16 17 H 0.08 5.01 5.41 -2.91 -0.02 4.99 16 18 C 0.01 0.63 5.49 84.86 0.47 1.10 16 19 N -0.92 -53.86 13.96 21.62 0.30 -53.56 16 20 Si 0.97 44.01 28.62 68.60 1.96 45.98 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C -0.24 -10.52 9.14 22.34 0.20 -10.32 16 25 C -0.05 -1.69 9.79 22.55 0.22 -1.47 16 26 C 0.13 2.37 2.88 45.34 0.13 2.50 16 27 H 0.05 1.22 7.82 -2.39 -0.02 1.20 16 28 C 0.06 1.08 6.47 71.98 0.47 1.54 16 29 O -0.57 -14.07 10.38 -125.98 -1.31 -15.37 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.08 0.63 8.05 -2.38 -0.02 0.61 16 35 H 0.09 0.92 7.14 -2.39 -0.02 0.90 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.15 2.77 4.86 -2.91 -0.01 2.76 16 38 H 0.12 3.59 7.52 -2.91 -0.02 3.56 16 39 H 0.16 3.29 6.16 -2.91 -0.02 3.27 16 40 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 15.39 8.31 -92.70 -0.77 14.62 16 42 H 0.11 5.41 5.62 -2.91 -0.02 5.39 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.38 6.24 9.12 -74.06 -0.68 5.56 16 Total: -1.00 -75.79 377.11 4.05 -71.74 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.33 Total: 23.38 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 5.12 Total: -24.93 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.13 Total: -68.63 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.23 Total: -47.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.96 Total: 45.98 kcal Total: -75.79 4.05 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.297 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds