Wall clock time and date at job start Tue Mar 31 2020 17:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.77527 * 2 1 4 4 C 1.55151 * 110.72002 * 236.76149 * 2 1 3 5 5 C 1.54912 * 101.57957 * 206.13411 * 4 2 1 6 6 N 1.47432 * 104.92727 * 36.95500 * 5 4 2 7 7 C 1.34778 * 125.64318 * 155.89214 * 6 5 4 8 8 O 1.21732 * 119.99255 * 180.02562 * 7 6 5 9 9 C 1.46248 * 120.00411 * 0.02562 * 7 6 5 10 10 C 1.35024 * 119.99633 * 180.02562 * 9 7 6 11 11 C 1.46965 * 119.99592 * 179.97438 * 10 9 7 12 12 C 1.40023 * 120.10422 * 359.72728 * 11 10 9 13 13 C 1.37597 * 119.90006 * 179.73802 * 12 11 10 14 14 C 1.39179 * 120.10163 * 0.51168 * 13 12 11 15 15 O 1.35560 * 119.90219 * 179.73910 * 14 13 12 16 16 C 1.34782 * 117.00474 * 174.46602 * 15 14 13 17 17 H 1.07998 * 119.99497 * 5.05783 * 16 15 14 18 18 C 1.38715 * 120.00315 * 185.05347 * 16 15 14 19 19 N 1.31509 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46674 * 60.00408 * 20 18 16 22 22 H 1.48503 * 109.47500 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47232 * 300.00683 * 20 18 16 24 24 C 1.39179 * 120.20129 * 359.76301 * 14 13 12 25 25 C 1.37604 * 120.10115 * 359.97438 * 24 14 13 26 26 C 1.47176 * 108.61544 * 336.00566 * 6 5 4 27 27 H 1.09003 * 109.94390 * 120.37502 * 26 6 5 28 28 C 1.52991 * 109.92735 * 241.45568 * 26 6 5 29 29 O 1.42900 * 109.47339 * 292.86305 * 28 26 6 30 30 H 1.09010 * 109.47017 * 181.78342 * 1 2 3 31 31 H 1.08996 * 109.47667 * 301.78698 * 1 2 3 32 32 H 1.09004 * 109.47208 * 61.79142 * 1 2 3 33 33 H 1.08992 * 111.00644 * 88.06182 * 4 2 1 34 34 H 1.09006 * 111.00767 * 324.20436 * 4 2 1 35 35 H 1.08997 * 110.36722 * 155.84564 * 5 4 2 36 36 H 1.08999 * 110.36806 * 278.05783 * 5 4 2 37 37 H 1.07994 * 120.00100 * 0.02562 * 9 7 6 38 38 H 1.07994 * 120.00267 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.04708 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.95057 * 180.27882 * 13 12 11 41 41 H 0.97006 * 119.99607 * 179.97438 * 19 18 16 42 42 H 1.07996 * 119.95338 * 179.97438 * 24 14 13 43 43 H 1.07994 * 120.04939 * 179.97438 * 25 24 14 44 44 H 1.09002 * 109.47272 * 52.86248 * 28 26 6 45 45 H 1.09002 * 109.47454 * 172.86102 * 28 26 6 46 46 H 0.96701 * 114.00410 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2137 5 6 3.4633 -1.2497 -0.6874 6 7 3.2471 -1.5500 0.7397 7 6 3.9963 -2.3827 1.4893 8 8 3.7238 -2.5561 2.6630 9 6 5.1364 -3.0777 0.8928 10 6 5.8865 -3.9123 1.6438 11 6 7.0318 -4.6112 1.0441 12 6 7.3437 -4.4176 -0.3071 13 6 8.4202 -5.0699 -0.8629 14 6 9.1923 -5.9293 -0.0868 15 8 10.2488 -6.5740 -0.6398 16 6 11.0241 -7.3013 0.1889 17 1 10.7453 -7.4176 1.2258 18 6 12.1799 -7.9004 -0.2900 19 7 12.5195 -7.7584 -1.5525 20 14 13.2547 -8.9077 0.8587 21 1 12.4659 -10.0391 1.4094 22 1 14.4218 -9.4366 0.1080 23 1 13.7309 -8.0481 1.9720 24 6 8.8827 -6.1293 1.2553 25 6 7.8112 -5.4771 1.8210 26 6 2.0760 -0.7911 1.2073 27 1 1.3129 -1.4758 1.5776 28 6 2.4907 0.1755 2.3183 29 8 2.8849 -0.5675 3.4736 30 1 -0.3633 -1.0273 0.0320 31 1 -0.3634 0.5413 0.8735 32 1 -0.3634 0.4858 -0.9056 33 1 2.1850 -0.1519 -2.0870 34 1 1.4452 -1.6536 -1.4375 35 1 3.7960 -2.1426 -1.2167 36 1 4.1936 -0.4485 -0.8002 37 1 5.3783 -2.9235 -0.1484 38 1 5.6448 -4.0662 2.6850 39 1 6.7424 -3.7543 -0.9112 40 1 8.6642 -4.9177 -1.9039 41 1 13.3279 -8.1771 -1.8873 42 1 9.4843 -6.7974 1.8537 43 1 7.5715 -5.6332 2.8624 44 1 3.3266 0.7855 1.9759 45 1 1.6495 0.8210 2.5711 46 1 3.1616 -0.0176 4.2194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189435232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:52 Heat of formation + Delta-G solvation = -69.087387 kcal Electronic energy + Delta-G solvation = -27184.211095 eV Core-core repulsion = 23232.924807 eV Total energy + Delta-G solvation = -3951.286288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28593 -39.15462 -37.80829 -36.76223 -36.32004 -33.26317 -32.95991 -32.21326 -30.52585 -30.39432 -28.64314 -27.57242 -25.64370 -24.24562 -23.62118 -22.38940 -21.93359 -20.83200 -19.87983 -18.59570 -17.93216 -17.30733 -17.12839 -16.85397 -16.64391 -15.29174 -14.88192 -14.71991 -14.63078 -14.36683 -14.35144 -13.98434 -13.78705 -13.62869 -13.48799 -13.33396 -13.05316 -12.85949 -12.53574 -12.36378 -12.11096 -11.86434 -11.84029 -11.70416 -11.66845 -11.26408 -11.15851 -11.08306 -11.02510 -10.99304 -10.66017 -10.51419 -10.02392 -9.52058 -9.46076 -9.44574 -8.82637 -8.54889 -8.34708 -7.06459 -6.62118 -4.17262 1.17555 2.16539 2.65438 3.04197 3.05796 3.07951 3.09681 3.72358 3.84737 3.89597 4.12502 4.39522 4.55179 4.60712 4.87333 4.95304 4.96432 4.98150 5.05934 5.07908 5.12278 5.15627 5.20980 5.27728 5.35516 5.44509 5.56155 5.57650 5.60409 5.67247 5.70233 5.72141 5.76060 5.96784 6.04314 6.16619 6.28300 6.50822 6.60837 6.69156 6.83608 6.95764 7.17053 7.27484 7.32653 7.64814 7.67444 7.70868 7.83223 8.56796 8.82687 9.50124 10.54567 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.001955 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.318475 B =14321.013149 C =15091.490213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.129 4.129 5 C 0.099 3.901 6 N -0.620 5.620 7 C 0.563 3.437 8 O -0.515 6.515 9 C -0.273 4.273 10 C 0.030 3.970 11 C -0.194 4.194 12 C -0.044 4.044 13 C -0.199 4.199 14 C 0.166 3.834 15 O -0.164 6.164 16 C -0.393 4.393 17 H 0.096 0.904 18 C 0.041 3.959 19 N -0.853 5.853 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.242 4.242 25 C -0.037 4.037 26 C 0.144 3.856 27 H 0.079 0.921 28 C 0.066 3.934 29 O -0.534 6.534 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.041 0.959 45 H 0.045 0.955 46 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 15.730 1.918 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.104 0.896 4 C -0.167 4.167 5 C -0.024 4.024 6 N -0.356 5.356 7 C 0.356 3.644 8 O -0.391 6.391 9 C -0.294 4.294 10 C 0.011 3.989 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.218 4.218 14 C 0.110 3.890 15 O -0.065 6.065 16 C -0.469 4.469 17 H 0.114 0.886 18 C -0.165 4.165 19 N -0.486 5.486 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.261 4.261 25 C -0.055 4.055 26 C 0.040 3.960 27 H 0.097 0.903 28 C -0.013 4.013 29 O -0.337 6.337 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.132 0.868 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.391 14.940 1.802 24.545 hybrid contribution 0.729 0.110 0.761 1.060 sum -18.662 15.049 2.563 24.111 Atomic orbital electron populations 1.21772 0.93567 1.02474 1.02153 1.22185 0.96463 0.99341 0.93796 0.89620 1.22881 0.96081 1.00367 0.97361 1.22292 0.97189 1.01008 0.81925 1.48399 1.30515 1.45921 1.10740 1.18071 0.82411 0.78338 0.85593 1.90857 1.70469 1.62500 1.15321 1.22501 0.99923 1.05983 1.01020 1.22256 0.89529 0.88644 0.98495 1.18475 1.00317 1.06184 0.94569 1.20864 0.94948 0.96743 0.93719 1.20140 0.98923 1.02470 1.00315 1.19603 0.88234 0.89821 0.91364 1.83900 1.32526 1.53593 1.36460 1.21413 1.03620 1.28534 0.93321 0.88639 1.25383 0.96573 0.97577 0.96939 1.70008 1.24353 1.40732 1.13543 0.85722 0.78900 0.79454 0.79089 1.19273 1.20110 1.19274 1.21100 1.01898 1.07169 0.95924 1.20988 0.92997 0.93311 0.98197 1.21579 0.88636 0.92911 0.92857 0.90326 1.22528 0.97768 0.93469 0.87571 1.86994 1.88175 1.35070 1.23446 0.92141 0.92320 0.91884 0.89705 0.90302 0.90216 0.91599 0.86233 0.85987 0.86556 0.86181 0.91603 0.85154 0.86837 0.94082 0.93642 0.79057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.15 37.16 0.34 -0.42 16 2 C -0.10 -0.65 3.07 -88.79 -0.27 -0.93 16 3 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 4 C -0.13 -0.82 6.53 -24.58 -0.16 -0.98 16 5 C 0.10 0.86 6.51 -2.52 -0.02 0.85 16 6 N -0.62 -7.55 3.07 -164.58 -0.51 -8.06 16 7 C 0.56 8.83 7.52 -13.04 -0.10 8.73 16 8 O -0.51 -9.72 13.54 -18.88 -0.26 -9.98 16 9 C -0.27 -4.09 8.85 -37.51 -0.33 -4.42 16 10 C 0.03 0.49 9.45 -37.19 -0.35 0.14 16 11 C -0.19 -3.44 5.87 -105.02 -0.62 -4.06 16 12 C -0.04 -0.78 9.40 -39.15 -0.37 -1.15 16 13 C -0.20 -4.06 9.97 -39.47 -0.39 -4.45 16 14 C 0.17 3.88 6.66 -38.88 -0.26 3.62 16 15 O -0.16 -4.49 9.74 0.77 0.01 -4.49 16 16 C -0.39 -10.57 9.48 30.91 0.29 -10.27 16 17 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 20 Si 0.94 19.73 29.55 -169.99 -5.02 14.70 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.24 -5.11 9.14 -39.46 -0.36 -5.47 16 25 C -0.04 -0.67 9.78 -39.14 -0.38 -1.06 16 26 C 0.14 1.49 2.89 -66.87 -0.19 1.29 16 27 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 28 C 0.07 0.66 6.46 37.15 0.24 0.90 16 29 O -0.53 -6.96 10.38 -59.27 -0.62 -7.58 16 30 H 0.06 0.36 8.09 -51.92 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 35 H 0.08 0.68 7.14 -51.93 -0.37 0.31 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.12 1.57 4.86 -52.49 -0.25 1.31 16 38 H 0.12 1.99 7.52 -52.49 -0.39 1.59 16 39 H 0.12 1.69 6.16 -52.49 -0.32 1.36 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.13 2.72 5.62 -52.49 -0.29 2.42 16 43 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.36 3.19 9.12 45.56 0.42 3.61 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -33.33 378.18 -8.63 -41.95 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.66 Total: 7.72 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.03 Total: -16.66 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.25 Total: -31.37 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.86 Total: -22.04 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.33 -8.63 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.133 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds