Wall clock time and date at job start Tue Mar 31 2020 17:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.77527 * 2 1 4 4 C 1.55151 * 110.72002 * 236.76149 * 2 1 3 5 5 C 1.54912 * 101.57957 * 206.13411 * 4 2 1 6 6 N 1.47432 * 104.92727 * 36.95500 * 5 4 2 7 7 C 1.34778 * 125.64318 * 155.89214 * 6 5 4 8 8 O 1.21732 * 119.99255 * 180.02562 * 7 6 5 9 9 C 1.46248 * 120.00411 * 0.02562 * 7 6 5 10 10 C 1.35024 * 119.99633 * 180.02562 * 9 7 6 11 11 C 1.46965 * 119.99592 * 179.97438 * 10 9 7 12 12 C 1.40023 * 120.10422 * 359.72728 * 11 10 9 13 13 C 1.37597 * 119.90006 * 179.73802 * 12 11 10 14 14 C 1.39179 * 120.10163 * 0.51168 * 13 12 11 15 15 O 1.35560 * 119.90219 * 179.73910 * 14 13 12 16 16 C 1.34782 * 117.00474 * 174.46602 * 15 14 13 17 17 H 1.07998 * 119.99497 * 5.05783 * 16 15 14 18 18 C 1.38715 * 120.00315 * 185.05347 * 16 15 14 19 19 N 1.31509 * 119.99757 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46674 * 60.00408 * 20 18 16 22 22 H 1.48503 * 109.47500 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47232 * 300.00683 * 20 18 16 24 24 C 1.39179 * 120.20129 * 359.76301 * 14 13 12 25 25 C 1.37604 * 120.10115 * 359.97438 * 24 14 13 26 26 C 1.47176 * 108.61544 * 336.00566 * 6 5 4 27 27 H 1.09003 * 109.94390 * 120.37502 * 26 6 5 28 28 C 1.52991 * 109.92735 * 241.45568 * 26 6 5 29 29 O 1.42900 * 109.47339 * 292.86305 * 28 26 6 30 30 H 1.09010 * 109.47017 * 181.78342 * 1 2 3 31 31 H 1.08996 * 109.47667 * 301.78698 * 1 2 3 32 32 H 1.09004 * 109.47208 * 61.79142 * 1 2 3 33 33 H 1.08992 * 111.00644 * 88.06182 * 4 2 1 34 34 H 1.09006 * 111.00767 * 324.20436 * 4 2 1 35 35 H 1.08997 * 110.36722 * 155.84564 * 5 4 2 36 36 H 1.08999 * 110.36806 * 278.05783 * 5 4 2 37 37 H 1.07994 * 120.00100 * 0.02562 * 9 7 6 38 38 H 1.07994 * 120.00267 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.04708 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.95057 * 180.27882 * 13 12 11 41 41 H 0.97006 * 119.99607 * 179.97438 * 19 18 16 42 42 H 1.07996 * 119.95338 * 179.97438 * 24 14 13 43 43 H 1.07994 * 120.04939 * 179.97438 * 25 24 14 44 44 H 1.09002 * 109.47272 * 52.86248 * 28 26 6 45 45 H 1.09002 * 109.47454 * 172.86102 * 28 26 6 46 46 H 0.96701 * 114.00410 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2137 5 6 3.4633 -1.2497 -0.6874 6 7 3.2471 -1.5500 0.7397 7 6 3.9963 -2.3827 1.4893 8 8 3.7238 -2.5561 2.6630 9 6 5.1364 -3.0777 0.8928 10 6 5.8865 -3.9123 1.6438 11 6 7.0318 -4.6112 1.0441 12 6 7.3437 -4.4176 -0.3071 13 6 8.4202 -5.0699 -0.8629 14 6 9.1923 -5.9293 -0.0868 15 8 10.2488 -6.5740 -0.6398 16 6 11.0241 -7.3013 0.1889 17 1 10.7453 -7.4176 1.2258 18 6 12.1799 -7.9004 -0.2900 19 7 12.5195 -7.7584 -1.5525 20 14 13.2547 -8.9077 0.8587 21 1 12.4659 -10.0391 1.4094 22 1 14.4218 -9.4366 0.1080 23 1 13.7309 -8.0481 1.9720 24 6 8.8827 -6.1293 1.2553 25 6 7.8112 -5.4771 1.8210 26 6 2.0760 -0.7911 1.2073 27 1 1.3129 -1.4758 1.5776 28 6 2.4907 0.1755 2.3183 29 8 2.8849 -0.5675 3.4736 30 1 -0.3633 -1.0273 0.0320 31 1 -0.3634 0.5413 0.8735 32 1 -0.3634 0.4858 -0.9056 33 1 2.1850 -0.1519 -2.0870 34 1 1.4452 -1.6536 -1.4375 35 1 3.7960 -2.1426 -1.2167 36 1 4.1936 -0.4485 -0.8002 37 1 5.3783 -2.9235 -0.1484 38 1 5.6448 -4.0662 2.6850 39 1 6.7424 -3.7543 -0.9112 40 1 8.6642 -4.9177 -1.9039 41 1 13.3279 -8.1771 -1.8873 42 1 9.4843 -6.7974 1.8537 43 1 7.5715 -5.6332 2.8624 44 1 3.3266 0.7855 1.9759 45 1 1.6495 0.8210 2.5711 46 1 3.1616 -0.0176 4.2194 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189435232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:51 Heat of formation + Delta-G solvation = -90.018084 kcal Electronic energy + Delta-G solvation = -27185.118718 eV Core-core repulsion = 23232.924807 eV Total energy + Delta-G solvation = -3952.193911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22741 -40.80966 -38.96260 -38.32323 -37.17900 -34.72685 -34.10928 -33.71926 -31.97536 -31.25341 -29.89304 -28.56232 -27.47167 -25.19344 -24.56208 -23.80564 -23.17273 -21.80019 -20.95642 -20.08447 -19.30066 -18.76835 -18.30731 -17.96994 -17.50047 -16.54418 -16.46228 -16.02508 -15.99754 -15.62321 -15.44105 -15.25482 -15.01207 -14.82098 -14.60057 -14.27886 -14.13995 -14.08171 -13.66630 -13.53051 -13.31956 -13.20913 -13.02923 -12.68831 -12.66042 -12.63570 -12.48653 -12.22531 -12.14546 -11.89378 -11.66424 -11.54637 -11.21914 -11.09658 -10.85457 -10.68691 -10.54732 -9.90067 -9.53125 -8.67393 -8.51945 -6.18130 -0.22156 0.57589 1.17099 1.35655 1.47623 1.51402 2.09878 2.15548 2.46008 2.86742 3.17523 3.22949 3.41688 3.50619 3.73563 3.84448 3.94157 4.06152 4.07805 4.18046 4.29618 4.30400 4.34882 4.42493 4.47052 4.47754 4.56530 4.59436 4.65610 4.78441 4.92880 4.93930 5.00923 5.03110 5.08480 5.14398 5.18668 5.21677 5.29320 5.33093 5.45613 5.50699 5.62347 5.66136 5.81207 5.97163 6.09553 6.65862 6.92182 6.95431 7.39528 7.69112 8.69811 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.001955 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.318475 B =14321.013149 C =15091.490213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.103 0.897 4 C -0.122 4.122 5 C 0.087 3.913 6 N -0.618 5.618 7 C 0.551 3.449 8 O -0.553 6.553 9 C -0.240 4.240 10 C 0.011 3.989 11 C -0.168 4.168 12 C -0.038 4.038 13 C -0.205 4.205 14 C 0.130 3.870 15 O -0.219 6.219 16 C -0.418 4.418 17 H 0.105 0.895 18 C -0.019 4.019 19 N -0.913 5.913 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.257 1.257 24 C -0.248 4.248 25 C -0.042 4.042 26 C 0.134 3.866 27 H 0.055 0.945 28 C 0.063 3.937 29 O -0.568 6.568 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.275 0.725 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.100 18.189 2.101 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.035 4.035 6 N -0.352 5.352 7 C 0.343 3.657 8 O -0.433 6.433 9 C -0.261 4.261 10 C -0.009 4.009 11 C -0.169 4.169 12 C -0.056 4.056 13 C -0.224 4.224 14 C 0.078 3.922 15 O -0.124 6.124 16 C -0.493 4.493 17 H 0.122 0.878 18 C -0.217 4.217 19 N -0.550 5.550 20 Si 0.837 3.163 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.182 1.182 24 C -0.267 4.267 25 C -0.060 4.060 26 C 0.031 3.969 27 H 0.073 0.927 28 C -0.016 4.016 29 O -0.373 6.373 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.174 0.826 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.097 17.463 1.984 28.234 hybrid contribution 1.004 -0.273 0.785 1.304 sum -21.093 17.190 2.769 27.351 Atomic orbital electron populations 1.21768 0.92596 1.02169 1.03230 1.22202 0.97124 0.99516 0.91897 0.87924 1.22902 0.94321 1.00716 0.97987 1.22624 0.99224 1.01833 0.79778 1.48488 1.30037 1.44519 1.12124 1.18236 0.82994 0.79024 0.85448 1.90850 1.71522 1.63913 1.17009 1.22799 0.98229 1.03276 1.01761 1.22127 0.89830 0.90116 0.98853 1.18769 0.99514 1.04155 0.94488 1.21238 0.94092 0.96303 0.93990 1.20406 0.99316 1.02104 1.00576 1.20168 0.88231 0.90970 0.92880 1.83881 1.34645 1.56262 1.37580 1.21853 1.04369 1.29171 0.93945 0.87774 1.26611 0.97755 0.98710 0.98660 1.70144 1.25526 1.43506 1.15807 0.84651 0.76842 0.77883 0.76906 1.18132 1.19534 1.18177 1.21199 1.02752 1.07497 0.95255 1.21300 0.92050 0.92836 0.99769 1.21856 0.87454 0.92879 0.94723 0.92667 1.22673 0.98810 0.93418 0.86663 1.86952 1.88513 1.37007 1.24861 0.93130 0.92006 0.90119 0.86964 0.90539 0.89753 0.90173 0.83775 0.86060 0.82587 0.85782 0.91580 0.85677 0.83955 0.93673 0.91114 0.77489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.15 71.98 0.66 -0.38 16 2 C -0.09 -0.84 3.07 -9.61 -0.03 -0.87 16 3 H 0.10 0.69 7.85 -2.39 -0.02 0.67 16 4 C -0.12 -1.03 6.53 31.98 0.21 -0.82 16 5 C 0.09 1.17 6.51 86.85 0.57 1.74 16 6 N -0.62 -13.36 3.07 -792.81 -2.44 -15.80 16 7 C 0.55 16.05 7.52 86.32 0.65 16.70 16 8 O -0.55 -20.33 13.54 18.53 0.25 -20.08 16 9 C -0.24 -6.36 8.85 23.61 0.21 -6.15 16 10 C 0.01 0.31 9.45 23.82 0.23 0.54 16 11 C -0.17 -5.55 5.87 -20.12 -0.12 -5.67 16 12 C -0.04 -1.26 9.40 22.55 0.21 -1.04 16 13 C -0.20 -8.32 9.97 22.34 0.22 -8.10 16 14 C 0.13 6.27 6.66 22.72 0.15 6.42 16 15 O -0.22 -12.76 9.74 -20.16 -0.20 -12.96 16 16 C -0.42 -23.69 9.48 67.93 0.64 -23.05 16 17 H 0.11 5.40 5.18 -2.91 -0.02 5.39 16 18 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 19 N -0.91 -54.56 13.67 21.62 0.30 -54.27 16 20 Si 1.02 41.79 29.55 68.60 2.03 43.81 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 24 C -0.25 -10.64 9.14 22.35 0.20 -10.43 16 25 C -0.04 -1.47 9.78 22.55 0.22 -1.25 16 26 C 0.13 2.47 2.89 45.31 0.13 2.60 16 27 H 0.06 1.28 7.79 -2.39 -0.02 1.26 16 28 C 0.06 1.12 6.46 71.98 0.47 1.59 16 29 O -0.57 -14.26 10.38 -125.99 -1.31 -15.57 16 30 H 0.05 0.49 8.09 -2.38 -0.02 0.47 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.72 8.05 -2.38 -0.02 0.70 16 35 H 0.08 1.07 7.14 -2.39 -0.02 1.05 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.14 3.06 4.86 -2.91 -0.01 3.05 16 38 H 0.12 3.71 7.52 -2.91 -0.02 3.68 16 39 H 0.16 3.79 6.16 -2.91 -0.02 3.78 16 40 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 41 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 42 H 0.13 5.40 5.62 -2.91 -0.02 5.39 16 43 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.38 6.34 9.12 -74.06 -0.68 5.66 16 Total: -1.00 -78.14 378.18 4.05 -74.09 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.33 Total: 29.52 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 5.09 Total: -28.75 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -2.14 Total: -70.06 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.25 Total: -48.61 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -78.14 4.05 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal (2) G-P(sol) polarization free energy of solvation -78.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds