Wall clock time and date at job start Tue Mar 31 2020 17:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.64642 * 2 1 4 4 C 1.55162 * 110.71990 * 123.13891 * 2 1 3 5 5 C 1.54913 * 101.58071 * 154.04056 * 4 2 1 6 6 N 1.47421 * 104.83308 * 322.99030 * 5 4 2 7 7 C 1.34777 * 125.65046 * 204.09134 * 6 5 4 8 8 O 1.21727 * 120.00324 * 180.02562 * 7 6 5 9 9 C 1.46257 * 119.99849 * 0.02562 * 7 6 5 10 10 C 1.35024 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.46964 * 119.99856 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10132 * 180.02562 * 11 10 9 13 13 C 1.37607 * 119.89653 * 180.27919 * 12 11 10 14 14 C 1.39174 * 120.09844 * 359.49217 * 13 12 11 15 15 O 1.35570 * 119.89819 * 180.23914 * 14 13 12 16 16 C 1.34777 * 117.00368 * 174.71897 * 15 14 13 17 17 H 1.08001 * 119.99665 * 5.05044 * 16 15 14 18 18 C 1.38717 * 120.00283 * 185.05527 * 16 15 14 19 19 N 1.31504 * 120.00057 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99873 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 90.00058 * 20 18 16 22 22 H 1.48501 * 109.47123 * 210.00239 * 20 18 16 23 23 H 1.48503 * 109.46906 * 329.99865 * 20 18 16 24 24 C 1.39178 * 120.20421 * 0.50592 * 14 13 12 25 25 C 1.37601 * 120.10019 * 359.75547 * 24 14 13 26 26 C 1.47022 * 108.70435 * 24.35744 * 6 5 4 27 27 H 1.09006 * 109.88585 * 118.12903 * 26 6 5 28 28 C 1.53001 * 109.88477 * 239.29511 * 26 6 5 29 29 O 1.42895 * 109.46852 * 293.54703 * 28 26 6 30 30 H 1.09007 * 109.46875 * 298.31429 * 1 2 3 31 31 H 1.08996 * 109.47711 * 58.31131 * 1 2 3 32 32 H 1.08998 * 109.47174 * 178.31498 * 1 2 3 33 33 H 1.08994 * 111.00453 * 35.97248 * 4 2 1 34 34 H 1.08995 * 111.00445 * 272.10965 * 4 2 1 35 35 H 1.09001 * 110.36682 * 204.15044 * 5 4 2 36 36 H 1.09003 * 110.46055 * 81.87589 * 5 4 2 37 37 H 1.07995 * 119.99944 * 0.02562 * 9 7 6 38 38 H 1.07995 * 120.00351 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.05466 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.94344 * 179.72829 * 13 12 11 41 41 H 0.97008 * 119.99869 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.94862 * 179.72343 * 24 14 13 43 43 H 1.07999 * 120.04359 * 179.97438 * 25 24 14 44 44 H 1.09002 * 109.46760 * 53.54000 * 28 26 6 45 45 H 1.08995 * 109.47284 * 173.54037 * 28 26 6 46 46 H 0.96709 * 113.99967 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 1.2152 5 6 3.4651 -1.2447 0.6914 6 7 3.2493 -1.5471 -0.7352 7 6 4.0003 -2.3787 -1.4843 8 8 3.7285 -2.5535 -2.6579 9 6 5.1418 -3.0710 -0.8870 10 6 5.8938 -3.9045 -1.6374 11 6 7.0405 -4.6006 -1.0371 12 6 7.8221 -5.4650 -1.8133 13 6 8.8913 -6.1191 -1.2455 14 6 9.2027 -5.9144 0.0954 15 8 10.2599 -6.5572 0.6494 16 6 10.5755 -6.2344 1.9193 17 1 9.9472 -5.5546 2.4757 18 6 11.7072 -6.7752 2.5118 19 7 12.0147 -6.4606 3.7510 20 14 12.7936 -7.9515 1.5496 21 1 13.8408 -7.1824 0.8307 22 1 13.4369 -8.9087 2.4852 23 1 11.9665 -8.6986 0.5682 24 6 8.4286 -5.0561 0.8708 25 6 7.3543 -4.4019 0.3129 26 6 2.0831 -0.7865 -1.2073 27 1 2.3848 -0.0962 -1.9951 28 6 1.0141 -1.7462 -1.7337 29 8 1.4977 -2.3994 -2.9090 30 1 -0.3633 0.4875 0.9048 31 1 -0.3634 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0302 33 1 1.4469 -1.6529 1.4384 34 1 2.1821 -0.1489 2.0882 35 1 3.7992 -2.1364 1.2219 36 1 4.1944 -0.4423 0.8030 37 1 5.3827 -2.9163 0.1543 38 1 5.6527 -4.0595 -2.6786 39 1 7.5832 -5.6219 -2.8548 40 1 9.4920 -6.7893 -1.8425 41 1 12.8060 -6.8391 4.1655 42 1 8.6713 -4.9038 1.9121 43 1 6.7541 -3.7364 0.9156 44 1 0.7877 -2.4914 -0.9710 45 1 0.1103 -1.1867 -1.9746 46 1 0.8705 -3.0246 -3.2978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189435253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:56 Heat of formation + Delta-G solvation = -62.027602 kcal Electronic energy + Delta-G solvation = -27369.150238 eV Core-core repulsion = 23418.170086 eV Total energy + Delta-G solvation = -3950.980152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40957 -39.32188 -37.93053 -36.91484 -36.23765 -33.37077 -33.05836 -32.38591 -30.52451 -30.42258 -28.75472 -27.34271 -25.46814 -24.88876 -23.60032 -22.73276 -21.96486 -20.56171 -19.32989 -18.51054 -18.12214 -17.78706 -17.47379 -16.75654 -16.26799 -15.75262 -14.98034 -14.74542 -14.52047 -14.42409 -14.13133 -13.98809 -13.93529 -13.70628 -13.58450 -13.23440 -12.93565 -12.87616 -12.76684 -12.40529 -12.29606 -12.23238 -11.86167 -11.81014 -11.71482 -11.33201 -11.13341 -11.06532 -10.99957 -10.80530 -10.73253 -10.25184 -9.96793 -9.56456 -9.52783 -9.45322 -8.89335 -8.57044 -8.43404 -7.18864 -6.58116 -4.21982 1.09612 2.06426 2.57367 3.02312 3.13647 3.17578 3.31118 3.67339 3.92485 4.11049 4.17355 4.32604 4.46925 4.49943 4.68027 4.88383 4.94994 4.95820 4.96638 5.02884 5.09709 5.15736 5.20446 5.29178 5.30938 5.41933 5.45433 5.50041 5.59087 5.61681 5.66965 5.69851 5.79923 5.90025 5.97123 6.03319 6.25217 6.40457 6.54609 6.62377 6.69982 6.98017 7.11720 7.22195 7.44895 7.65131 7.65703 7.68369 7.86888 8.53515 8.75653 9.36600 10.48306 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.002111 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.673554 B =13262.707671 C =14283.035480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.089 0.911 4 C -0.130 4.130 5 C 0.098 3.902 6 N -0.619 5.619 7 C 0.561 3.439 8 O -0.511 6.511 9 C -0.266 4.266 10 C 0.025 3.975 11 C -0.184 4.184 12 C -0.044 4.044 13 C -0.198 4.198 14 C 0.172 3.828 15 O -0.204 6.204 16 C -0.391 4.391 17 H 0.110 0.890 18 C 0.066 3.934 19 N -0.869 5.869 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.229 4.229 25 C -0.043 4.043 26 C 0.144 3.856 27 H 0.076 0.924 28 C 0.064 3.936 29 O -0.534 6.534 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.283 0.717 42 H 0.136 0.864 43 H 0.115 0.885 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 11.136 -5.626 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.025 4.025 6 N -0.355 5.355 7 C 0.354 3.646 8 O -0.387 6.387 9 C -0.287 4.287 10 C 0.005 3.995 11 C -0.185 4.185 12 C -0.062 4.062 13 C -0.218 4.218 14 C 0.118 3.882 15 O -0.107 6.107 16 C -0.466 4.466 17 H 0.127 0.873 18 C -0.139 4.139 19 N -0.505 5.505 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.248 4.248 25 C -0.061 4.061 26 C 0.040 3.960 27 H 0.094 0.906 28 C -0.015 4.015 29 O -0.336 6.336 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.154 0.846 43 H 0.133 0.867 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.581 11.133 -6.056 24.170 hybrid contribution 0.026 -0.651 0.054 0.654 sum -20.555 10.482 -6.002 23.841 Atomic orbital electron populations 1.21880 0.93883 1.02400 1.02266 1.22204 0.96377 0.99368 0.93783 0.89307 1.22892 0.96055 1.00333 0.97498 1.22315 0.97270 1.01074 0.81826 1.48369 1.30175 1.46180 1.10777 1.18060 0.82318 0.78397 0.85824 1.90863 1.69628 1.62768 1.15460 1.22571 0.99579 1.05503 1.01071 1.22253 0.89683 0.88925 0.98599 1.18541 0.99895 1.05502 0.94572 1.20871 0.93047 0.93921 0.98386 1.20151 1.01816 1.06812 0.92978 1.19354 0.87305 0.89827 0.91722 1.83507 1.41532 1.55825 1.29865 1.20858 1.10986 1.29658 0.85129 0.87267 1.24529 0.96424 0.97484 0.95501 1.69617 1.26627 1.42434 1.11828 0.86163 0.80302 0.80512 0.79883 1.19657 1.20557 1.18207 1.21208 0.98777 1.03139 1.01699 1.21033 0.95099 0.96330 0.93612 1.21452 0.85968 0.92487 0.96062 0.90559 1.22667 0.95571 0.94955 0.88308 1.87031 1.44263 1.60347 1.42002 0.91928 0.92114 0.91999 0.90480 0.89654 0.90257 0.91364 0.86154 0.85822 0.86219 0.86091 0.90717 0.84607 0.86719 0.94089 0.93179 0.79251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 7.99 37.15 0.30 -0.44 16 2 C -0.10 -0.65 3.45 -88.78 -0.31 -0.96 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -0.83 6.53 -24.58 -0.16 -0.99 16 5 C 0.10 0.87 6.52 -2.53 -0.02 0.85 16 6 N -0.62 -7.49 3.08 -164.68 -0.51 -8.00 16 7 C 0.56 8.66 7.52 -13.04 -0.10 8.56 16 8 O -0.51 -9.42 13.31 -19.27 -0.26 -9.68 16 9 C -0.27 -3.91 8.85 -37.50 -0.33 -4.24 16 10 C 0.03 0.39 9.45 -37.19 -0.35 0.04 16 11 C -0.18 -3.13 5.87 -105.03 -0.62 -3.74 16 12 C -0.04 -0.74 9.78 -39.15 -0.38 -1.12 16 13 C -0.20 -3.79 9.97 -39.46 -0.39 -4.18 16 14 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 15 O -0.20 -5.16 8.57 0.75 0.01 -5.16 16 16 C -0.39 -10.56 9.94 30.91 0.31 -10.25 16 17 H 0.11 2.99 5.41 -52.49 -0.28 2.71 16 18 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 19 N -0.87 -24.10 13.96 55.48 0.77 -23.32 16 20 Si 0.91 20.81 28.62 -169.99 -4.86 15.95 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 24 C -0.23 -4.73 9.14 -39.47 -0.36 -5.09 16 25 C -0.04 -0.75 9.40 -39.15 -0.37 -1.12 16 26 C 0.14 1.48 3.29 -66.94 -0.22 1.26 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 C 0.06 0.63 5.31 37.16 0.20 0.83 16 29 O -0.53 -6.87 10.16 -59.67 -0.61 -7.48 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.28 7.81 -51.93 -0.41 -0.12 16 32 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 33 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.12 1.58 4.86 -52.49 -0.25 1.33 16 38 H 0.12 1.91 7.52 -52.49 -0.39 1.51 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.28 7.21 8.31 -40.82 -0.34 6.88 16 42 H 0.14 2.91 5.62 -52.49 -0.29 2.61 16 43 H 0.11 1.72 6.16 -52.49 -0.32 1.40 16 44 H 0.04 0.40 7.77 -51.93 -0.40 -0.01 16 45 H 0.05 0.37 6.46 -51.93 -0.34 0.04 16 46 H 0.36 3.15 9.12 45.56 0.42 3.56 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.25 371.68 -8.51 -40.77 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.50 Total: 6.69 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.16 Total: -15.36 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.27 Total: -31.32 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.86 Total: -22.31 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.25 -8.51 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.262 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds