Wall clock time and date at job start Tue Mar 31 2020 17:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.64642 * 2 1 4 4 C 1.55162 * 110.71990 * 123.13891 * 2 1 3 5 5 C 1.54913 * 101.58071 * 154.04056 * 4 2 1 6 6 N 1.47421 * 104.83308 * 322.99030 * 5 4 2 7 7 C 1.34777 * 125.65046 * 204.09134 * 6 5 4 8 8 O 1.21727 * 120.00324 * 180.02562 * 7 6 5 9 9 C 1.46257 * 119.99849 * 0.02562 * 7 6 5 10 10 C 1.35024 * 119.99697 * 179.97438 * 9 7 6 11 11 C 1.46964 * 119.99856 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10132 * 180.02562 * 11 10 9 13 13 C 1.37607 * 119.89653 * 180.27919 * 12 11 10 14 14 C 1.39174 * 120.09844 * 359.49217 * 13 12 11 15 15 O 1.35570 * 119.89819 * 180.23914 * 14 13 12 16 16 C 1.34777 * 117.00368 * 174.71897 * 15 14 13 17 17 H 1.08001 * 119.99665 * 5.05044 * 16 15 14 18 18 C 1.38717 * 120.00283 * 185.05527 * 16 15 14 19 19 N 1.31504 * 120.00057 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99873 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47251 * 90.00058 * 20 18 16 22 22 H 1.48501 * 109.47123 * 210.00239 * 20 18 16 23 23 H 1.48503 * 109.46906 * 329.99865 * 20 18 16 24 24 C 1.39178 * 120.20421 * 0.50592 * 14 13 12 25 25 C 1.37601 * 120.10019 * 359.75547 * 24 14 13 26 26 C 1.47022 * 108.70435 * 24.35744 * 6 5 4 27 27 H 1.09006 * 109.88585 * 118.12903 * 26 6 5 28 28 C 1.53001 * 109.88477 * 239.29511 * 26 6 5 29 29 O 1.42895 * 109.46852 * 293.54703 * 28 26 6 30 30 H 1.09007 * 109.46875 * 298.31429 * 1 2 3 31 31 H 1.08996 * 109.47711 * 58.31131 * 1 2 3 32 32 H 1.08998 * 109.47174 * 178.31498 * 1 2 3 33 33 H 1.08994 * 111.00453 * 35.97248 * 4 2 1 34 34 H 1.08995 * 111.00445 * 272.10965 * 4 2 1 35 35 H 1.09001 * 110.36682 * 204.15044 * 5 4 2 36 36 H 1.09003 * 110.46055 * 81.87589 * 5 4 2 37 37 H 1.07995 * 119.99944 * 0.02562 * 9 7 6 38 38 H 1.07995 * 120.00351 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.05466 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.94344 * 179.72829 * 13 12 11 41 41 H 0.97008 * 119.99869 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.94862 * 179.72343 * 24 14 13 43 43 H 1.07999 * 120.04359 * 179.97438 * 25 24 14 44 44 H 1.09002 * 109.46760 * 53.54000 * 28 26 6 45 45 H 1.08995 * 109.47284 * 173.54037 * 28 26 6 46 46 H 0.96709 * 113.99967 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 1.2152 5 6 3.4651 -1.2447 0.6914 6 7 3.2493 -1.5471 -0.7352 7 6 4.0003 -2.3787 -1.4843 8 8 3.7285 -2.5535 -2.6579 9 6 5.1418 -3.0710 -0.8870 10 6 5.8938 -3.9045 -1.6374 11 6 7.0405 -4.6006 -1.0371 12 6 7.8221 -5.4650 -1.8133 13 6 8.8913 -6.1191 -1.2455 14 6 9.2027 -5.9144 0.0954 15 8 10.2599 -6.5572 0.6494 16 6 10.5755 -6.2344 1.9193 17 1 9.9472 -5.5546 2.4757 18 6 11.7072 -6.7752 2.5118 19 7 12.0147 -6.4606 3.7510 20 14 12.7936 -7.9515 1.5496 21 1 13.8408 -7.1824 0.8307 22 1 13.4369 -8.9087 2.4852 23 1 11.9665 -8.6986 0.5682 24 6 8.4286 -5.0561 0.8708 25 6 7.3543 -4.4019 0.3129 26 6 2.0831 -0.7865 -1.2073 27 1 2.3848 -0.0962 -1.9951 28 6 1.0141 -1.7462 -1.7337 29 8 1.4977 -2.3994 -2.9090 30 1 -0.3633 0.4875 0.9048 31 1 -0.3634 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0302 33 1 1.4469 -1.6529 1.4384 34 1 2.1821 -0.1489 2.0882 35 1 3.7992 -2.1364 1.2219 36 1 4.1944 -0.4423 0.8030 37 1 5.3827 -2.9163 0.1543 38 1 5.6527 -4.0595 -2.6786 39 1 7.5832 -5.6219 -2.8548 40 1 9.4920 -6.7893 -1.8425 41 1 12.8060 -6.8391 4.1655 42 1 8.6713 -4.9038 1.9121 43 1 6.7541 -3.7364 0.9156 44 1 0.7877 -2.4914 -0.9710 45 1 0.1103 -1.1867 -1.9746 46 1 0.8705 -3.0246 -3.2978 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189435253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:55 Heat of formation + Delta-G solvation = -81.725435 kcal Electronic energy + Delta-G solvation = -27370.004400 eV Core-core repulsion = 23418.170086 eV Total energy + Delta-G solvation = -3951.834314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32468 -40.93348 -39.07298 -38.42181 -37.09680 -34.77724 -34.26350 -33.89550 -31.94454 -31.24990 -30.11397 -28.24051 -27.20286 -25.66495 -24.72978 -23.92967 -23.27694 -21.75471 -20.13963 -19.93870 -19.54332 -19.30199 -18.56188 -17.94372 -17.08334 -16.85762 -16.49134 -16.15743 -15.88064 -15.74875 -15.47350 -15.25453 -15.20564 -14.69789 -14.54611 -14.20344 -14.13428 -14.06168 -13.98812 -13.69146 -13.41330 -13.34500 -13.14085 -12.84623 -12.73332 -12.61133 -12.42524 -12.33875 -11.98488 -11.93309 -11.62774 -11.38633 -11.28620 -11.14983 -10.78569 -10.69274 -10.63154 -9.92613 -9.54904 -8.73963 -8.53806 -6.25035 -0.26246 0.54197 1.13636 1.32244 1.37072 1.51825 2.08621 2.26021 2.43323 2.80588 3.00086 3.14941 3.25599 3.54031 3.65218 3.81728 3.86482 3.96211 4.05981 4.20779 4.29405 4.32090 4.34113 4.42643 4.45019 4.45309 4.56091 4.57996 4.67560 4.76100 4.86760 4.88784 4.93253 5.08688 5.11628 5.14065 5.16151 5.22423 5.28181 5.39945 5.43028 5.50574 5.63301 5.70306 5.78573 5.84207 6.13784 6.63564 6.79669 6.97647 7.38106 7.51274 8.56863 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.002111 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.673554 B =13262.707671 C =14283.035480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.098 0.902 4 C -0.121 4.121 5 C 0.087 3.913 6 N -0.618 5.618 7 C 0.550 3.450 8 O -0.547 6.547 9 C -0.241 4.241 10 C 0.011 3.989 11 C -0.160 4.160 12 C -0.041 4.041 13 C -0.195 4.195 14 C 0.136 3.864 15 O -0.234 6.234 16 C -0.403 4.403 17 H 0.087 0.913 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.240 4.240 25 C -0.045 4.045 26 C 0.133 3.867 27 H 0.055 0.945 28 C 0.064 3.936 29 O -0.567 6.567 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.286 0.714 42 H 0.118 0.882 43 H 0.143 0.857 44 H 0.043 0.957 45 H 0.075 0.925 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.922 12.338 -6.673 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.116 0.884 4 C -0.159 4.159 5 C -0.035 4.035 6 N -0.352 5.352 7 C 0.342 3.658 8 O -0.426 6.426 9 C -0.262 4.262 10 C -0.009 4.009 11 C -0.161 4.161 12 C -0.058 4.058 13 C -0.214 4.214 14 C 0.086 3.914 15 O -0.141 6.141 16 C -0.479 4.479 17 H 0.104 0.896 18 C -0.186 4.186 19 N -0.555 5.555 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.259 4.259 25 C -0.063 4.063 26 C 0.030 3.970 27 H 0.073 0.927 28 C -0.015 4.015 29 O -0.372 6.372 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.161 0.839 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.196 12.373 -7.103 27.232 hybrid contribution 0.342 -0.726 0.167 0.819 sum -22.854 11.647 -6.936 26.572 Atomic orbital electron populations 1.21875 0.92388 1.02651 1.03284 1.22212 0.97471 0.99175 0.91907 0.88363 1.22904 0.94218 1.00757 0.98013 1.22614 0.99341 1.01630 0.79945 1.48462 1.29901 1.44822 1.12002 1.18209 0.82809 0.79056 0.85688 1.90853 1.70626 1.64150 1.16953 1.22832 0.98311 1.03419 1.01646 1.22177 0.89719 0.89942 0.99066 1.18827 0.99325 1.03830 0.94080 1.21300 0.91735 0.92671 1.00135 1.20456 1.02383 1.06811 0.91765 1.19903 0.87286 0.90970 0.93247 1.83466 1.43637 1.57968 1.28980 1.20771 1.11178 1.29774 0.86152 0.89553 1.25290 0.97698 0.99199 0.96416 1.69695 1.27850 1.44687 1.13288 0.85246 0.78466 0.78642 0.78577 1.19057 1.19184 1.18596 1.21229 0.99863 1.03760 1.01046 1.21283 0.94376 0.96240 0.94357 1.21730 0.85633 0.92425 0.97243 0.92674 1.22788 0.96208 0.94981 0.87503 1.86984 1.45917 1.61131 1.43178 0.90371 0.91744 0.92080 0.90274 0.87245 0.90001 0.90457 0.84407 0.85311 0.82430 0.84599 0.90379 0.86463 0.83936 0.93897 0.90691 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 7.99 71.98 0.57 -0.37 16 2 C -0.09 -0.89 3.45 -9.60 -0.03 -0.93 16 3 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -1.11 6.53 31.99 0.21 -0.90 16 5 C 0.09 1.28 6.52 86.86 0.57 1.85 16 6 N -0.62 -13.68 3.08 -793.14 -2.44 -16.12 16 7 C 0.55 16.00 7.52 86.33 0.65 16.64 16 8 O -0.55 -19.61 13.31 18.93 0.25 -19.36 16 9 C -0.24 -6.45 8.85 23.62 0.21 -6.24 16 10 C 0.01 0.30 9.45 23.82 0.23 0.53 16 11 C -0.16 -5.02 5.87 -20.13 -0.12 -5.14 16 12 C -0.04 -1.25 9.78 22.55 0.22 -1.03 16 13 C -0.20 -7.22 9.97 22.35 0.22 -7.00 16 14 C 0.14 6.17 6.66 22.72 0.15 6.32 16 15 O -0.23 -12.30 8.57 -20.23 -0.17 -12.47 16 16 C -0.40 -22.94 9.94 67.93 0.68 -22.27 16 17 H 0.09 5.11 5.41 -2.91 -0.02 5.09 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.92 -53.11 13.96 21.62 0.30 -52.81 16 20 Si 0.97 44.11 28.62 68.60 1.96 46.07 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.24 -10.10 9.14 22.34 0.20 -9.89 16 25 C -0.04 -1.51 9.40 22.55 0.21 -1.30 16 26 C 0.13 2.48 3.29 45.35 0.15 2.63 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 C 0.06 1.13 5.31 71.98 0.38 1.51 16 29 O -0.57 -14.10 10.16 -125.61 -1.28 -15.38 16 30 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.39 7.81 -2.39 -0.02 0.38 16 32 H 0.06 0.43 6.43 -2.39 -0.02 0.41 16 33 H 0.08 0.73 8.05 -2.39 -0.02 0.71 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.17 7.14 -2.39 -0.02 1.16 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.14 3.15 4.86 -2.91 -0.01 3.14 16 38 H 0.13 3.63 7.52 -2.91 -0.02 3.61 16 39 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.29 15.22 8.31 -92.70 -0.77 14.45 16 42 H 0.12 5.35 5.62 -2.91 -0.02 5.33 16 43 H 0.14 3.92 6.16 -2.91 -0.02 3.90 16 44 H 0.04 0.74 7.77 -2.39 -0.02 0.72 16 45 H 0.08 0.94 6.46 -2.39 -0.02 0.92 16 46 H 0.38 6.26 9.12 -74.05 -0.68 5.58 16 Total: -1.00 -73.65 371.68 3.93 -69.72 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.34 Total: 24.70 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 4.97 Total: -24.35 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -2.14 Total: -68.93 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.20 Total: -47.21 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.96 Total: 46.07 kcal Total: -73.65 3.93 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189435253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.005 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds