Wall clock time and date at job start Tue Mar 31 2020 17:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.91779 * 2 1 4 4 C 1.54907 * 111.00141 * 236.09334 * 2 1 3 5 5 N 1.47428 * 104.82947 * 204.91708 * 4 2 1 6 6 C 1.34779 * 125.64586 * 204.16572 * 5 4 2 7 7 O 1.21725 * 119.99603 * 179.97438 * 6 5 4 8 8 C 1.46245 * 120.00382 * 359.95645 * 6 5 4 9 9 C 1.35024 * 120.00321 * 179.97438 * 8 6 5 10 10 C 1.46957 * 120.00270 * 180.02562 * 9 8 6 11 11 C 1.40034 * 120.09794 * 359.72804 * 10 9 8 12 12 C 1.37600 * 119.89267 * 179.69653 * 11 10 9 13 13 C 1.39175 * 120.10247 * 0.59985 * 12 11 10 14 14 O 1.35576 * 119.90042 * 179.69618 * 13 12 11 15 15 C 1.34775 * 117.00229 * 174.42633 * 14 13 12 16 16 H 1.08000 * 120.00131 * 5.05004 * 15 14 13 17 17 C 1.38713 * 119.99974 * 185.06046 * 15 14 13 18 18 N 1.31512 * 120.00184 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00243 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47281 * 90.00123 * 19 17 15 21 21 H 1.48500 * 109.47581 * 210.00504 * 19 17 15 22 22 H 1.48508 * 109.46886 * 330.00356 * 19 17 15 23 23 C 1.39174 * 120.20581 * 359.67657 * 13 12 11 24 24 C 1.37603 * 120.10133 * 0.02562 * 23 13 12 25 25 C 1.47020 * 108.70437 * 24.13138 * 5 4 2 26 26 C 1.54327 * 107.26836 * 358.93749 * 25 5 4 27 27 H 1.09009 * 110.71837 * 96.35156 * 26 25 5 28 28 C 1.52998 * 110.71767 * 219.44240 * 26 25 5 29 29 O 1.42907 * 109.47489 * 293.54561 * 28 26 25 30 30 H 1.09002 * 109.47154 * 296.10797 * 1 2 3 31 31 H 1.09005 * 109.47133 * 56.09888 * 1 2 3 32 32 H 1.08997 * 109.47463 * 176.10000 * 1 2 3 33 33 H 1.09002 * 110.36797 * 86.08166 * 4 2 1 34 34 H 1.08998 * 110.36844 * 323.75589 * 4 2 1 35 35 H 1.08005 * 119.99983 * 0.02562 * 8 6 5 36 36 H 1.07997 * 119.99931 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.05055 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.94766 * 180.32259 * 12 11 10 39 39 H 0.97003 * 120.00093 * 179.97438 * 18 17 15 40 40 H 1.07995 * 119.95568 * 179.97438 * 23 13 12 41 41 H 1.07995 * 120.05360 * 180.02562 * 24 23 13 42 42 H 1.08999 * 109.88115 * 239.52116 * 25 5 4 43 43 H 1.09000 * 109.88536 * 118.35379 * 25 5 4 44 44 H 1.08993 * 109.47511 * 53.55196 * 28 26 25 45 45 H 1.09008 * 109.46920 * 173.55143 * 28 26 25 46 46 H 0.96695 * 114.00023 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4480 -1.5604 -1.5939 7 8 5.5172 -1.9093 -1.1283 8 6 4.2711 -1.4860 -3.0437 9 6 5.2941 -1.8033 -3.8659 10 6 5.1165 -1.7280 -5.3228 11 6 3.8855 -1.3327 -5.8606 12 6 3.7258 -1.2576 -7.2253 13 6 4.7815 -1.5856 -8.0707 14 8 4.6177 -1.5161 -9.4147 15 6 5.7082 -1.7339 -10.1762 16 1 6.6381 -2.0320 -9.7149 17 6 5.6363 -1.5750 -11.5523 18 7 6.7005 -1.7870 -12.2953 19 14 4.0278 -1.0599 -12.3503 20 1 3.9647 0.4219 -12.4254 21 1 3.9500 -1.6287 -13.7198 22 1 2.8897 -1.5632 -11.5398 23 6 6.0050 -1.9845 -7.5408 24 6 6.1759 -2.0568 -6.1773 25 6 3.4674 -1.2742 0.6961 26 6 2.0861 -0.8078 1.2022 27 1 1.4477 -1.6632 1.4240 28 6 2.2350 0.0877 2.4338 29 8 2.7485 -0.6817 3.5231 30 1 -0.3633 0.4522 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1560 -0.1722 -2.0837 34 1 1.4518 -1.6705 -1.4023 35 1 3.3225 -1.1763 -3.4568 36 1 6.2428 -2.1126 -3.4529 37 1 3.0644 -1.0821 -5.2053 38 1 2.7784 -0.9478 -7.6409 39 1 6.6501 -1.6763 -13.2576 40 1 6.8213 -2.2386 -8.2006 41 1 7.1258 -2.3660 -5.7669 42 1 4.2426 -0.5998 1.0600 43 1 3.6649 -2.2894 1.0402 44 1 2.9223 0.9032 2.2091 45 1 1.2618 0.4971 2.7051 46 1 2.8691 -0.1767 4.3388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191865571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:48 Heat of formation + Delta-G solvation = -73.799854 kcal Electronic energy + Delta-G solvation = -26716.526054 eV Core-core repulsion = 22765.035419 eV Total energy + Delta-G solvation = -3951.490635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34856 -39.35818 -38.34728 -37.05019 -36.67369 -33.32922 -33.16178 -32.46447 -30.94507 -30.52665 -28.55490 -26.73116 -26.36527 -25.45676 -23.13840 -22.34797 -21.93885 -20.67524 -20.18041 -18.82517 -18.00308 -17.63582 -17.47632 -17.12456 -16.70523 -15.47846 -15.23636 -15.01866 -14.86059 -14.68077 -14.22369 -14.08482 -13.98528 -13.83346 -13.55122 -13.35619 -12.96553 -12.83632 -12.82498 -12.68785 -12.45028 -12.38805 -11.93820 -11.85350 -11.77238 -11.45826 -11.19953 -11.17780 -11.03122 -11.00479 -10.75812 -10.44303 -10.27834 -9.80295 -9.65076 -9.54806 -8.94384 -8.72926 -8.47039 -7.23956 -6.60315 -4.24130 0.99165 2.03309 2.47488 2.92378 3.11569 3.15405 3.28627 3.50516 3.61584 4.02967 4.08650 4.10110 4.42917 4.52503 4.62995 4.72974 4.75339 4.88555 4.93539 4.93988 4.98980 5.09139 5.11616 5.20506 5.21096 5.40893 5.42623 5.43448 5.51788 5.59750 5.60987 5.69496 5.72783 5.88836 5.93817 6.02145 6.10072 6.29729 6.49574 6.53628 6.67495 6.93121 7.08878 7.15418 7.16472 7.41677 7.48182 7.62865 7.84143 8.27133 8.72971 9.33199 10.45934 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.001882 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.136829 B =14871.048247 C =15832.038449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.106 3.894 5 N -0.624 5.624 6 C 0.570 3.430 7 O -0.555 6.555 8 C -0.274 4.274 9 C 0.035 3.965 10 C -0.188 4.188 11 C -0.045 4.045 12 C -0.199 4.199 13 C 0.173 3.827 14 O -0.202 6.202 15 C -0.392 4.392 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.867 5.867 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.258 1.258 23 C -0.229 4.229 24 C -0.037 4.037 25 C 0.120 3.880 26 C -0.097 4.097 27 H 0.093 0.907 28 C 0.087 3.913 29 O -0.572 6.572 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.639 5.143 25.015 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.358 5.358 6 C 0.365 3.635 7 O -0.435 6.435 8 C -0.295 4.295 9 C 0.015 3.985 10 C -0.189 4.189 11 C -0.063 4.063 12 C -0.218 4.218 13 C 0.119 3.881 14 O -0.105 6.105 15 C -0.467 4.467 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.503 5.503 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.182 1.182 23 C -0.249 4.249 24 C -0.055 4.055 25 C -0.002 4.002 26 C -0.116 4.116 27 H 0.111 0.889 28 C 0.009 3.991 29 O -0.378 6.378 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.108 4.493 24.330 27.546 hybrid contribution -0.497 0.665 -0.094 0.835 sum -12.605 5.157 24.236 27.801 Atomic orbital electron populations 1.21733 0.93298 1.02608 1.02372 1.22377 0.96448 0.99472 0.93576 0.89379 1.22399 0.83474 0.98331 0.97549 1.48327 1.12493 1.68460 1.06517 1.18096 0.82103 0.76286 0.87055 1.90791 1.25983 1.48722 1.78012 1.22451 1.01512 1.14432 0.91082 1.22313 0.97422 0.87077 0.91684 1.18521 0.95549 1.13323 0.91543 1.20871 0.95815 0.95895 0.93768 1.20138 0.98835 1.10590 0.92282 1.19360 0.93206 0.91908 0.83649 1.83503 1.37123 1.76860 1.13048 1.20875 0.89279 1.47410 0.89104 0.87196 1.24539 0.98744 0.95633 0.95028 1.69619 1.28595 1.45294 1.06750 0.86156 0.82811 0.79396 0.78450 1.19648 1.20522 1.18210 1.21223 0.98928 1.09331 0.95369 1.21048 0.97102 0.94641 0.92718 1.21814 0.96578 1.01929 0.79911 1.22314 0.96866 0.99079 0.93361 0.88886 1.22144 0.97587 0.92931 0.86478 1.86503 1.87781 1.40668 1.22818 0.92110 0.91793 0.92018 0.89970 0.91033 0.85857 0.85752 0.86335 0.86120 0.90663 0.84488 0.86499 0.91502 0.91360 0.93275 0.93097 0.77240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.31 37.16 0.35 -0.27 16 2 C -0.10 -0.60 3.09 -88.47 -0.27 -0.87 16 3 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 4 C 0.11 0.85 5.99 -2.53 -0.02 0.84 16 5 N -0.62 -7.33 3.33 -172.22 -0.57 -7.90 16 6 C 0.57 8.57 7.77 -13.04 -0.10 8.47 16 7 O -0.55 -10.33 16.56 5.17 0.09 -10.24 16 8 C -0.27 -3.80 8.85 -37.51 -0.33 -4.13 16 9 C 0.03 0.53 9.45 -37.19 -0.35 0.18 16 10 C -0.19 -3.12 5.87 -105.02 -0.62 -3.74 16 11 C -0.05 -0.73 9.40 -39.14 -0.37 -1.10 16 12 C -0.20 -3.68 9.97 -39.47 -0.39 -4.08 16 13 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 14 O -0.20 -5.06 8.57 0.74 0.01 -5.05 16 15 C -0.39 -10.50 9.94 30.91 0.31 -10.19 16 16 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 17 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 18 N -0.87 -23.93 13.96 55.48 0.77 -23.16 16 19 Si 0.91 20.58 28.62 -169.99 -4.86 15.71 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.23 -4.71 9.14 -39.47 -0.36 -5.07 16 24 C -0.04 -0.65 9.78 -39.14 -0.38 -1.03 16 25 C 0.12 1.28 6.32 -3.06 -0.02 1.26 16 26 C -0.10 -0.70 2.70 -88.79 -0.24 -0.94 16 27 H 0.09 0.68 8.04 -51.92 -0.42 0.26 16 28 C 0.09 0.51 6.36 37.16 0.24 0.74 16 29 O -0.57 -3.99 13.50 -35.23 -0.48 -4.46 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.08 0.61 7.14 -51.93 -0.37 0.24 16 34 H 0.07 0.53 7.98 -51.93 -0.41 0.12 16 35 H 0.12 1.44 4.86 -52.48 -0.25 1.19 16 36 H 0.12 1.90 7.52 -52.49 -0.39 1.50 16 37 H 0.12 1.52 6.16 -52.49 -0.32 1.20 16 38 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.14 2.93 5.62 -52.49 -0.29 2.64 16 41 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.27 8.06 -51.93 -0.42 -0.15 16 45 H 0.05 0.21 8.14 -51.92 -0.42 -0.21 16 46 H 0.38 0.95 9.12 45.56 0.42 1.36 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -32.01 382.75 -7.87 -39.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.67 Total: 4.19 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.92 Total: -14.74 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.20 Total: -31.06 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.38 Total: -19.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.01 -7.87 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191865571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.921 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds