Wall clock time and date at job start Tue Mar 31 2020 17:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.91779 * 2 1 4 4 C 1.54907 * 111.00141 * 236.09334 * 2 1 3 5 5 N 1.47428 * 104.82947 * 204.91708 * 4 2 1 6 6 C 1.34779 * 125.64586 * 204.16572 * 5 4 2 7 7 O 1.21725 * 119.99603 * 179.97438 * 6 5 4 8 8 C 1.46245 * 120.00382 * 359.95645 * 6 5 4 9 9 C 1.35024 * 120.00321 * 179.97438 * 8 6 5 10 10 C 1.46957 * 120.00270 * 180.02562 * 9 8 6 11 11 C 1.40034 * 120.09794 * 359.72804 * 10 9 8 12 12 C 1.37600 * 119.89267 * 179.69653 * 11 10 9 13 13 C 1.39175 * 120.10247 * 0.59985 * 12 11 10 14 14 O 1.35576 * 119.90042 * 179.69618 * 13 12 11 15 15 C 1.34775 * 117.00229 * 174.42633 * 14 13 12 16 16 H 1.08000 * 120.00131 * 5.05004 * 15 14 13 17 17 C 1.38713 * 119.99974 * 185.06046 * 15 14 13 18 18 N 1.31512 * 120.00184 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00243 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47281 * 90.00123 * 19 17 15 21 21 H 1.48500 * 109.47581 * 210.00504 * 19 17 15 22 22 H 1.48508 * 109.46886 * 330.00356 * 19 17 15 23 23 C 1.39174 * 120.20581 * 359.67657 * 13 12 11 24 24 C 1.37603 * 120.10133 * 0.02562 * 23 13 12 25 25 C 1.47020 * 108.70437 * 24.13138 * 5 4 2 26 26 C 1.54327 * 107.26836 * 358.93749 * 25 5 4 27 27 H 1.09009 * 110.71837 * 96.35156 * 26 25 5 28 28 C 1.52998 * 110.71767 * 219.44240 * 26 25 5 29 29 O 1.42907 * 109.47489 * 293.54561 * 28 26 25 30 30 H 1.09002 * 109.47154 * 296.10797 * 1 2 3 31 31 H 1.09005 * 109.47133 * 56.09888 * 1 2 3 32 32 H 1.08997 * 109.47463 * 176.10000 * 1 2 3 33 33 H 1.09002 * 110.36797 * 86.08166 * 4 2 1 34 34 H 1.08998 * 110.36844 * 323.75589 * 4 2 1 35 35 H 1.08005 * 119.99983 * 0.02562 * 8 6 5 36 36 H 1.07997 * 119.99931 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.05055 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.94766 * 180.32259 * 12 11 10 39 39 H 0.97003 * 120.00093 * 179.97438 * 18 17 15 40 40 H 1.07995 * 119.95568 * 179.97438 * 23 13 12 41 41 H 1.07995 * 120.05360 * 180.02562 * 24 23 13 42 42 H 1.08999 * 109.88115 * 239.52116 * 25 5 4 43 43 H 1.09000 * 109.88536 * 118.35379 * 25 5 4 44 44 H 1.08993 * 109.47511 * 53.55196 * 28 26 25 45 45 H 1.09008 * 109.46920 * 173.55143 * 28 26 25 46 46 H 0.96695 * 114.00023 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4480 -1.5604 -1.5939 7 8 5.5172 -1.9093 -1.1283 8 6 4.2711 -1.4860 -3.0437 9 6 5.2941 -1.8033 -3.8659 10 6 5.1165 -1.7280 -5.3228 11 6 3.8855 -1.3327 -5.8606 12 6 3.7258 -1.2576 -7.2253 13 6 4.7815 -1.5856 -8.0707 14 8 4.6177 -1.5161 -9.4147 15 6 5.7082 -1.7339 -10.1762 16 1 6.6381 -2.0320 -9.7149 17 6 5.6363 -1.5750 -11.5523 18 7 6.7005 -1.7870 -12.2953 19 14 4.0278 -1.0599 -12.3503 20 1 3.9647 0.4219 -12.4254 21 1 3.9500 -1.6287 -13.7198 22 1 2.8897 -1.5632 -11.5398 23 6 6.0050 -1.9845 -7.5408 24 6 6.1759 -2.0568 -6.1773 25 6 3.4674 -1.2742 0.6961 26 6 2.0861 -0.8078 1.2022 27 1 1.4477 -1.6632 1.4240 28 6 2.2350 0.0877 2.4338 29 8 2.7485 -0.6817 3.5231 30 1 -0.3633 0.4522 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1560 -0.1722 -2.0837 34 1 1.4518 -1.6705 -1.4023 35 1 3.3225 -1.1763 -3.4568 36 1 6.2428 -2.1126 -3.4529 37 1 3.0644 -1.0821 -5.2053 38 1 2.7784 -0.9478 -7.6409 39 1 6.6501 -1.6763 -13.2576 40 1 6.8213 -2.2386 -8.2006 41 1 7.1258 -2.3660 -5.7669 42 1 4.2426 -0.5998 1.0600 43 1 3.6649 -2.2894 1.0402 44 1 2.9223 0.9032 2.2091 45 1 1.2618 0.4971 2.7051 46 1 2.8691 -0.1767 4.3388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191865571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:47 Heat of formation + Delta-G solvation = -95.224119 kcal Electronic energy + Delta-G solvation = -26717.455080 eV Core-core repulsion = 22765.035419 eV Total energy + Delta-G solvation = -3952.419661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28737 -40.92334 -39.31030 -38.55034 -37.28305 -34.79528 -34.26611 -33.94568 -32.02285 -31.58112 -29.91546 -27.69896 -27.26276 -26.82846 -24.32932 -23.78341 -22.79023 -21.66444 -21.04713 -20.22043 -19.43299 -19.11694 -18.39953 -18.07680 -17.50548 -16.73300 -16.54658 -16.21040 -15.81613 -15.79393 -15.65845 -15.48761 -15.31616 -14.81728 -14.43017 -14.31002 -14.23224 -14.13777 -14.01653 -13.63318 -13.43602 -13.37714 -13.29920 -13.01400 -12.73005 -12.63604 -12.36639 -12.35510 -12.02486 -11.93936 -11.66945 -11.54032 -11.31466 -11.17227 -11.03066 -10.86585 -10.68921 -9.92731 -9.72949 -8.75527 -8.53647 -6.25629 -0.32191 0.54293 1.07036 1.32941 1.37590 1.52761 1.97278 2.26416 2.28662 2.79555 2.99458 3.14163 3.14778 3.45916 3.48959 3.72889 3.89786 4.03293 4.07908 4.16286 4.22434 4.28055 4.35418 4.41541 4.44680 4.51244 4.57267 4.60366 4.65727 4.70008 4.82254 4.82978 4.89762 5.04313 5.07789 5.13240 5.13972 5.23703 5.30965 5.32048 5.42953 5.49589 5.58301 5.69270 5.77744 5.82657 6.13393 6.46689 6.79324 6.90997 7.11876 7.50063 8.57104 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.001882 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.136829 B =14871.048247 C =15832.038449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.094 0.906 4 C 0.093 3.907 5 N -0.618 5.618 6 C 0.558 3.442 7 O -0.600 6.600 8 C -0.237 4.237 9 C 0.014 3.986 10 C -0.161 4.161 11 C -0.038 4.038 12 C -0.192 4.192 13 C 0.137 3.863 14 O -0.232 6.232 15 C -0.404 4.404 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.243 4.243 24 C -0.045 4.045 25 C 0.116 3.884 26 C -0.090 4.090 27 H 0.093 0.907 28 C 0.086 3.914 29 O -0.597 6.597 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.157 0.843 36 H 0.120 0.880 37 H 0.166 0.834 38 H 0.141 0.859 39 H 0.286 0.714 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 6.645 28.086 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.113 0.887 4 C -0.028 4.028 5 N -0.350 5.350 6 C 0.352 3.648 7 O -0.483 6.483 8 C -0.257 4.257 9 C -0.006 4.006 10 C -0.162 4.162 11 C -0.056 4.056 12 C -0.211 4.211 13 C 0.087 3.913 14 O -0.138 6.138 15 C -0.480 4.480 16 H 0.101 0.899 17 C -0.188 4.188 18 N -0.556 5.556 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.262 4.262 24 C -0.063 4.063 25 C -0.007 4.007 26 C -0.109 4.109 27 H 0.112 0.888 28 C 0.009 3.991 29 O -0.406 6.406 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.174 0.826 36 H 0.138 0.862 37 H 0.183 0.817 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.086 6.015 27.488 32.412 hybrid contribution 0.681 0.186 -0.355 0.791 sum -15.405 6.201 27.133 31.812 Atomic orbital electron populations 1.21721 0.91532 1.02971 1.03387 1.22356 0.97663 0.99095 0.91615 0.88726 1.22788 0.81477 0.99471 0.99077 1.48433 1.13209 1.66491 1.06894 1.18369 0.82221 0.76361 0.87867 1.90780 1.28000 1.50781 1.78782 1.22720 1.01984 1.10630 0.90360 1.22181 0.98210 0.89434 0.90776 1.18780 0.95201 1.10025 0.92150 1.21335 0.96693 0.94270 0.93254 1.20495 0.98532 1.09182 0.92878 1.19941 0.94825 0.93283 0.83272 1.83459 1.36021 1.80107 1.14213 1.20753 0.89364 1.48083 0.89812 0.89904 1.25345 1.02069 0.95914 0.95433 1.69708 1.30582 1.48230 1.07128 0.85195 0.78537 0.79203 0.77682 1.18921 1.19324 1.18268 1.21219 0.98373 1.10159 0.96492 1.21279 0.98780 0.94700 0.91579 1.21908 0.98714 1.00653 0.79440 1.22317 0.94418 0.99665 0.94547 0.88848 1.22195 0.98883 0.92362 0.85687 1.86455 1.88028 1.42026 1.24066 0.91046 0.90918 0.91979 0.88454 0.89739 0.82608 0.86220 0.81660 0.84081 0.90380 0.86862 0.84494 0.92749 0.93376 0.93047 0.90675 0.75181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.31 71.98 0.67 0.11 16 2 C -0.09 -0.69 3.09 -9.40 -0.03 -0.72 16 3 H 0.09 0.67 8.05 -2.39 -0.02 0.66 16 4 C 0.09 1.09 5.99 86.85 0.52 1.61 16 5 N -0.62 -12.81 3.33 -816.98 -2.72 -15.52 16 6 C 0.56 15.40 7.77 86.32 0.67 16.08 16 7 O -0.60 -21.86 16.56 -4.43 -0.07 -21.94 16 8 C -0.24 -5.57 8.85 23.61 0.21 -5.36 16 9 C 0.01 0.38 9.45 23.82 0.23 0.61 16 10 C -0.16 -4.86 5.87 -20.12 -0.12 -4.98 16 11 C -0.04 -1.05 9.40 22.55 0.21 -0.84 16 12 C -0.19 -6.64 9.97 22.34 0.22 -6.41 16 13 C 0.14 6.09 6.66 22.72 0.15 6.24 16 14 O -0.23 -12.01 8.57 -20.27 -0.17 -12.18 16 15 C -0.40 -23.06 9.94 67.93 0.68 -22.38 16 16 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 17 C 0.01 0.67 5.49 84.85 0.47 1.13 16 18 N -0.92 -53.48 13.96 21.62 0.30 -53.18 16 19 Si 0.97 43.59 28.62 68.60 1.96 45.55 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 C -0.24 -10.37 9.14 22.34 0.20 -10.16 16 24 C -0.05 -1.57 9.78 22.55 0.22 -1.35 16 25 C 0.12 2.29 6.32 86.73 0.55 2.84 16 26 C -0.09 -1.04 2.70 -9.61 -0.03 -1.07 16 27 H 0.09 1.10 8.04 -2.38 -0.02 1.08 16 28 C 0.09 0.76 6.36 71.98 0.46 1.22 16 29 O -0.60 -7.16 13.50 -148.98 -2.01 -9.17 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.06 0.28 8.07 -2.39 -0.02 0.26 16 33 H 0.10 0.88 7.14 -2.39 -0.02 0.87 16 34 H 0.08 0.84 7.98 -2.39 -0.02 0.82 16 35 H 0.16 2.61 4.86 -2.91 -0.01 2.59 16 36 H 0.12 3.46 7.52 -2.91 -0.02 3.44 16 37 H 0.17 3.07 6.16 -2.91 -0.02 3.05 16 38 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.29 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.11 5.32 5.62 -2.91 -0.02 5.30 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 0.43 8.06 -2.39 -0.02 0.41 16 45 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 46 H 0.40 1.20 9.12 -74.06 -0.68 0.52 16 Total: -1.00 -75.01 382.75 2.90 -72.11 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.33 Total: 17.77 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 5.28 Total: -23.45 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -2.42 Total: -68.70 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.26 Total: -43.29 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.96 Total: 45.55 kcal Total: -75.01 2.90 -72.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191865571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.115 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds