Wall clock time and date at job start Tue Mar 31 2020 16:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 O 1.42906 * 109.47417 * 119.99837 * 2 1 3 5 5 C 1.35911 * 117.00165 * 154.84680 * 4 2 1 6 6 C 1.38897 * 119.96774 * 185.43521 * 5 4 2 7 7 C 1.38288 * 120.28670 * 180.02562 * 6 5 4 8 8 C 1.37941 * 120.23259 * 0.02562 * 7 6 5 9 9 C 1.39832 * 119.93791 * 359.97438 * 8 7 6 10 10 C 1.47210 * 120.14130 * 179.97438 * 9 8 7 11 11 C 1.34805 * 120.00562 * 0.02562 * 10 9 8 12 12 C 1.46424 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21695 * 120.00364 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99998 * 179.97438 * 12 11 10 15 15 C 1.47571 * 134.49502 * 179.97438 * 14 12 11 16 16 C 1.53942 * 86.12046 * 204.65770 * 15 14 12 17 17 O 1.42908 * 113.74043 * 90.73460 * 16 15 14 18 18 C 1.50701 * 113.74524 * 221.93960 * 16 15 14 19 19 H 1.07993 * 119.99635 * 358.07561 * 18 16 15 20 20 C 1.37877 * 119.99741 * 178.07645 * 18 16 15 21 21 N 1.31511 * 120.00406 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 119.99801 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46784 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47332 * 119.99618 * 22 20 18 25 25 H 1.48495 * 109.46828 * 239.99672 * 22 20 18 26 26 C 1.47926 * 134.49786 * 0.02585 * 14 12 11 27 27 C 1.38377 * 119.96972 * 5.71274 * 5 4 2 28 28 H 1.09005 * 109.47111 * 300.00191 * 1 2 3 29 29 H 1.09005 * 109.46966 * 59.99504 * 1 2 3 30 30 H 1.09001 * 109.47649 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47111 * 239.99809 * 2 1 3 32 32 H 1.08996 * 109.47380 * 60.00030 * 3 2 1 33 33 H 1.09006 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46817 * 300.00093 * 3 2 1 35 35 H 1.07998 * 119.85666 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.88497 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.03009 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.00166 * 179.97438 * 10 9 8 39 39 H 1.08006 * 119.99271 * 359.97438 * 11 10 9 40 40 H 1.09004 * 113.77323 * 90.35845 * 15 14 12 41 41 H 1.09001 * 113.87659 * 318.97721 * 15 14 12 42 42 H 0.96698 * 113.99791 * 181.92351 * 17 16 15 43 43 H 0.97002 * 120.00444 * 180.02562 * 21 20 18 44 44 H 1.09005 * 113.86810 * 41.08287 * 26 14 12 45 45 H 1.08998 * 113.77245 * 269.58371 * 26 14 12 46 46 H 1.08007 * 120.12199 * 359.97438 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2455 -1.2275 1.0968 6 6 3.7241 -1.9927 2.1526 7 6 4.9841 -2.5589 2.0886 8 6 5.7758 -2.3676 0.9754 9 6 5.3035 -1.5990 -0.0931 10 6 6.1449 -1.3915 -1.2831 11 6 7.3733 -1.9433 -1.3448 12 6 8.2103 -1.7363 -2.5282 13 8 7.7969 -1.0666 -3.4564 14 7 9.4387 -2.2876 -2.5896 15 6 10.5221 -2.2906 -3.5917 16 6 10.9729 -3.6138 -2.9469 17 8 10.3877 -4.7732 -3.5433 18 6 12.4661 -3.7295 -2.7794 19 1 13.1116 -2.9378 -3.1298 20 6 13.0079 -4.8460 -2.1787 21 7 12.2217 -5.8098 -1.7515 22 14 14.8588 -4.9891 -1.9704 23 1 15.5147 -3.7800 -2.5300 24 1 15.1868 -5.1075 -0.5270 25 1 15.3461 -6.1936 -2.6893 26 6 10.2422 -3.1334 -1.6801 27 6 4.0314 -1.0239 -0.0238 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 3.1095 -2.1460 3.0274 36 1 5.3499 -3.1524 2.9135 37 1 6.7592 -2.8117 0.9287 38 1 5.7777 -0.7978 -2.1072 39 1 7.7403 -2.5373 -0.5208 40 1 11.2364 -1.4764 -3.4690 41 1 10.1729 -2.3988 -4.6186 42 1 10.6455 -5.6046 -3.1223 43 1 12.6029 -6.5952 -1.3286 44 1 9.6679 -3.9142 -1.1815 45 1 10.8744 -2.5664 -0.9967 46 1 3.6618 -0.4258 -0.8436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193973757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:24 Heat of formation + Delta-G solvation = -49.843230 kcal Electronic energy + Delta-G solvation = -27168.395197 eV Core-core repulsion = 23217.943399 eV Total energy + Delta-G solvation = -3950.451798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51445 -39.50540 -38.15431 -37.33391 -34.20254 -33.93794 -33.04939 -32.24174 -30.71484 -29.50050 -28.37499 -27.64841 -25.65915 -25.28136 -23.74072 -23.49486 -21.13799 -21.00811 -19.58390 -18.25697 -17.92029 -17.48596 -16.72053 -16.16674 -15.98870 -15.71132 -15.42277 -14.99367 -14.77153 -14.61834 -14.24749 -14.06243 -13.66934 -13.55736 -13.14489 -13.10959 -12.83726 -12.65723 -12.54396 -12.50898 -12.26126 -12.10673 -11.95942 -11.63588 -11.59027 -11.30035 -11.18518 -11.10313 -11.05601 -10.89521 -10.52363 -10.30853 -10.13672 -9.69119 -9.26671 -8.79351 -8.69046 -8.44471 -8.17946 -7.81367 -6.41347 -4.51557 0.53867 1.26627 2.07980 2.90655 3.12304 3.22078 3.25765 3.53264 3.59305 3.90842 4.17299 4.37661 4.48912 4.56966 4.62610 4.72696 4.82707 4.87516 5.04438 5.10222 5.15297 5.20671 5.27639 5.33778 5.34163 5.40559 5.57392 5.59410 5.68962 5.77525 5.79750 5.92923 6.01567 6.08070 6.13940 6.28794 6.31972 6.36356 6.50441 6.57475 6.61829 6.63820 6.75062 7.08012 7.21779 7.61069 7.80053 8.44515 8.52182 8.73354 9.19742 9.40525 10.65434 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.002135 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.968231 B =13112.940866 C =13909.538822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.182 4.182 4 O -0.312 6.312 5 C 0.129 3.871 6 C -0.151 4.151 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.021 4.021 10 C -0.054 4.054 11 C -0.169 4.169 12 C 0.555 3.445 13 O -0.569 6.569 14 N -0.625 5.625 15 C 0.112 3.888 16 C 0.238 3.762 17 O -0.572 6.572 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.077 3.923 27 C -0.194 4.194 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.672 7.973 8.399 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.226 6.226 5 C 0.084 3.916 6 C -0.169 4.169 7 C -0.098 4.098 8 C -0.161 4.161 9 C -0.021 4.021 10 C -0.074 4.074 11 C -0.189 4.189 12 C 0.347 3.653 13 O -0.452 6.452 14 N -0.357 5.357 15 C -0.010 4.010 16 C 0.196 3.804 17 O -0.384 6.384 18 C -0.574 4.574 19 H 0.090 0.910 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.045 4.045 27 C -0.212 4.212 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.458 8.657 7.779 21.821 hybrid contribution 1.309 -0.525 0.504 1.498 sum -17.148 8.132 8.283 20.708 Atomic orbital electron populations 1.21851 0.92416 1.03186 1.03056 1.22464 0.95426 0.92745 0.87514 1.22398 1.02446 0.95876 1.03171 1.86114 1.29486 1.68218 1.38816 1.18845 0.84669 0.93689 0.94440 1.20522 0.97185 1.00645 0.98568 1.20910 0.92921 0.98051 0.97882 1.21412 1.00823 1.00284 0.93549 1.18840 0.93190 0.96286 0.93820 1.22226 0.92850 0.96771 0.95578 1.23099 0.95348 1.01903 0.98594 1.17908 0.81242 0.79104 0.87055 1.90736 1.73341 1.41548 1.39601 1.50187 1.13031 1.49718 1.22773 1.23460 0.85662 0.98229 0.93669 1.19854 0.90789 0.83080 0.86648 1.86068 1.73248 1.18159 1.60925 1.21536 0.91029 1.05240 1.39633 0.90974 1.25075 0.99297 0.95077 0.93646 1.69407 1.35536 1.08778 1.40053 0.86287 0.83920 0.78430 0.77938 1.19435 1.20688 1.20649 1.24408 0.91149 0.91547 0.97407 1.21440 0.95285 1.05470 0.99028 0.91496 0.90455 0.91626 0.90694 0.91428 0.91619 0.90894 0.85288 0.85002 0.85126 0.84857 0.85416 0.89522 0.91047 0.75357 0.91736 0.91188 0.89828 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.56 37.15 0.36 -0.56 16 2 C 0.07 0.61 2.84 -26.73 -0.08 0.53 16 3 C -0.18 -1.33 9.17 37.16 0.34 -0.98 16 4 O -0.31 -3.32 9.80 -19.46 -0.19 -3.51 16 5 C 0.13 1.46 6.60 -39.29 -0.26 1.20 16 6 C -0.15 -1.59 9.98 -39.32 -0.39 -1.99 16 7 C -0.08 -0.83 10.02 -39.67 -0.40 -1.22 16 8 C -0.14 -1.71 9.41 -39.09 -0.37 -2.07 16 9 C -0.02 -0.27 5.87 -105.08 -0.62 -0.89 16 10 C -0.05 -0.80 9.46 -37.16 -0.35 -1.15 16 11 C -0.17 -2.80 9.20 -37.51 -0.35 -3.14 16 12 C 0.56 11.52 7.97 -12.96 -0.10 11.42 16 13 O -0.57 -13.27 16.96 5.19 0.09 -13.18 16 14 N -0.63 -13.32 3.62 -179.68 -0.65 -13.97 16 15 C 0.11 2.44 8.23 -2.97 -0.02 2.42 16 16 C 0.24 5.64 1.40 -90.85 -0.13 5.51 16 17 O -0.57 -14.60 13.48 -35.23 -0.48 -15.07 16 18 C -0.54 -13.24 8.61 -34.44 -0.30 -13.54 16 19 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 20 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 21 N -0.90 -22.31 11.20 55.43 0.62 -21.69 16 22 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.08 1.64 7.87 -2.78 -0.02 1.61 16 27 C -0.19 -2.26 7.99 -38.95 -0.31 -2.57 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.60 6.31 -51.93 -0.33 0.27 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.55 6.91 -51.93 -0.36 0.19 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.48 6.16 -52.49 -0.32 1.15 16 38 H 0.13 1.97 7.52 -52.48 -0.39 1.58 16 39 H 0.13 1.90 5.90 -52.48 -0.31 1.59 16 40 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.39 10.02 6.60 45.56 0.30 10.32 16 43 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 46 H 0.13 1.35 5.42 -52.48 -0.28 1.07 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -29.13 385.73 -8.79 -37.92 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.89 Total: 13.27 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.09 Total: -3.76 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.03 Total: -35.67 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.58 Total: -31.75 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.13 -8.79 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193973757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.918 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds