Wall clock time and date at job start Tue Mar 31 2020 17:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.55360 * 2 1 4 4 C 1.53293 * 109.51787 * 239.86943 * 2 1 3 5 5 N 1.47141 * 108.38955 * 187.77306 * 4 2 1 6 6 C 1.34782 * 120.98916 * 230.51386 * 5 4 2 7 7 O 1.21724 * 119.99420 * 354.71071 * 6 5 4 8 8 C 1.46252 * 120.00510 * 174.98762 * 6 5 4 9 9 C 1.35019 * 120.00167 * 172.53095 * 8 6 5 10 10 C 1.46968 * 119.99972 * 348.93823 * 9 8 6 11 11 C 1.40027 * 120.10136 * 311.84601 * 10 9 8 12 12 C 1.37596 * 119.89579 * 179.78447 * 11 10 9 13 13 C 1.39180 * 120.09939 * 0.48731 * 12 11 10 14 14 O 1.35573 * 119.89538 * 179.71752 * 13 12 11 15 15 C 1.34782 * 116.99653 * 186.69720 * 14 13 12 16 16 H 1.07998 * 120.00567 * 5.86776 * 15 14 13 17 17 C 1.38727 * 119.99573 * 185.86972 * 15 14 13 18 18 N 1.31501 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99582 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47283 * 90.00101 * 19 17 15 21 21 H 1.48501 * 109.47249 * 210.00044 * 19 17 15 22 22 H 1.48501 * 109.47555 * 329.99790 * 19 17 15 23 23 C 1.39171 * 120.20208 * 359.74268 * 13 12 11 24 24 C 1.37594 * 120.10722 * 0.02562 * 23 13 12 25 25 C 1.47159 * 118.03709 * 50.78978 * 5 4 2 26 26 C 1.53720 * 108.15745 * 309.15608 * 25 5 4 27 27 H 1.08996 * 109.65926 * 292.57515 * 26 25 5 28 28 C 1.52995 * 109.44226 * 172.36845 * 26 25 5 29 29 O 1.42966 * 109.51157 * 120.12260 * 2 1 3 30 30 H 1.08998 * 109.46828 * 180.12693 * 1 2 3 31 31 H 1.09000 * 109.47245 * 300.12987 * 1 2 3 32 32 H 1.09009 * 109.46737 * 60.12881 * 1 2 3 33 33 H 1.09008 * 109.67660 * 68.04764 * 4 2 1 34 34 H 1.08996 * 109.70960 * 307.52088 * 4 2 1 35 35 H 1.08003 * 119.99714 * 352.53159 * 8 6 5 36 36 H 1.07995 * 119.99979 * 168.94624 * 9 8 6 37 37 H 1.07998 * 120.05091 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.95009 * 180.22905 * 12 11 10 39 39 H 0.97005 * 119.99623 * 180.02562 * 18 17 15 40 40 H 1.08010 * 119.94500 * 179.97438 * 23 13 12 41 41 H 1.07998 * 120.05480 * 179.97438 * 24 23 13 42 42 H 1.08996 * 109.67989 * 68.93027 * 25 5 4 43 43 H 1.08990 * 109.68414 * 189.49408 * 25 5 4 44 44 H 1.09001 * 109.47676 * 300.39180 * 28 26 25 45 45 H 1.09009 * 109.47044 * 60.39034 * 28 26 25 46 46 H 1.08995 * 109.47374 * 180.38736 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7253 -1.2496 5 7 3.5011 -0.8762 -1.1335 6 6 4.3194 -0.5043 -2.1378 7 8 3.8512 -0.1260 -3.1958 8 6 5.7698 -0.5610 -1.9586 9 6 6.5891 -0.3345 -3.0077 10 6 6.0394 -0.2726 -4.3693 11 6 5.1638 -1.2685 -4.8192 12 6 4.6483 -1.2040 -6.0932 13 6 5.0037 -0.1565 -6.9379 14 8 4.4977 -0.1001 -8.1944 15 6 4.9853 0.8575 -9.0079 16 1 5.8098 1.4744 -8.6823 17 6 4.4280 1.0508 -10.2635 18 7 3.4244 0.2993 -10.6601 19 14 5.1032 2.3784 -11.3907 20 1 6.1863 1.8094 -12.2325 21 1 4.0147 2.8882 -12.2627 22 1 5.6456 3.4932 -10.5732 23 6 5.8773 0.8330 -6.4967 24 6 6.3942 0.7793 -5.2226 25 6 4.0403 -1.4510 0.1093 26 6 3.4313 -0.6854 1.2949 27 1 3.8029 0.3393 1.2996 28 6 3.8211 -1.3776 2.6024 29 8 2.0075 -0.6763 1.1656 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3634 0.5158 0.8888 32 1 -0.3633 0.5119 -0.8912 33 1 1.8031 -0.1399 -2.1376 34 1 1.5759 -1.7079 -1.3213 35 1 6.1855 -0.7840 -0.9871 36 1 7.6482 -0.1990 -2.8463 37 1 4.8913 -2.0843 -4.1660 38 1 3.9700 -1.9696 -6.4398 39 1 3.0349 0.4342 -11.5383 40 1 6.1507 1.6438 -7.1558 41 1 7.0724 1.5474 -4.8813 42 1 3.7718 -2.5055 0.1727 43 1 5.1251 -1.3465 0.1217 44 1 3.4507 -2.4027 2.5954 45 1 4.9068 -1.3842 2.7004 46 1 3.3838 -0.8390 3.4431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229769633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:50 Heat of formation + Delta-G solvation = -48.766412 kcal Electronic energy + Delta-G solvation = -28055.724291 eV Core-core repulsion = 24105.319187 eV Total energy + Delta-G solvation = -3950.405104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48358 -39.11174 -38.39349 -36.47049 -34.74192 -34.15654 -33.03791 -32.12310 -30.56327 -30.12807 -28.40393 -27.09617 -26.21528 -25.33551 -23.02440 -22.21067 -21.79794 -21.34555 -20.41456 -18.53505 -17.90731 -17.50374 -17.02541 -16.79744 -15.98837 -15.73578 -15.10321 -14.80712 -14.57403 -14.42601 -14.28323 -13.80253 -13.59169 -13.49374 -13.35791 -13.21382 -12.95714 -12.72053 -12.49680 -12.47825 -12.33410 -12.23208 -12.05787 -11.80483 -11.68740 -11.33205 -11.32409 -11.01667 -10.87412 -10.67604 -10.58424 -10.40228 -10.25765 -9.51866 -9.42316 -9.16807 -8.72218 -8.56018 -7.96864 -6.89405 -6.45532 -4.01415 1.23870 2.40549 2.63515 2.90319 3.13758 3.14529 3.19099 3.32727 3.53625 3.97314 4.32766 4.57663 4.62673 4.67783 4.73469 4.77653 4.88941 4.99393 5.05596 5.12844 5.20102 5.23162 5.32551 5.34478 5.41981 5.52711 5.54972 5.57448 5.69839 5.72938 5.73565 5.76939 5.84141 5.91768 6.20475 6.26501 6.36524 6.46840 6.58679 6.77891 6.92452 7.02510 7.11943 7.33840 7.41348 7.47665 7.49933 7.91470 8.00825 8.43708 9.00137 9.72453 10.72432 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002485 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.799104 B =11262.699210 C =12093.706673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.061 0.939 4 C 0.085 3.915 5 N -0.624 5.624 6 C 0.544 3.456 7 O -0.506 6.506 8 C -0.267 4.267 9 C 0.029 3.971 10 C -0.183 4.183 11 C -0.001 4.001 12 C -0.198 4.198 13 C 0.169 3.831 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.245 4.245 24 C -0.044 4.044 25 C 0.080 3.920 26 C 0.073 3.927 27 H 0.062 0.938 28 C -0.143 4.143 29 O -0.377 6.377 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.271 0.729 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -2.171 24.565 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.079 0.921 4 C -0.038 4.038 5 N -0.360 5.360 6 C 0.336 3.664 7 O -0.382 6.382 8 C -0.287 4.287 9 C 0.010 3.990 10 C -0.184 4.184 11 C -0.019 4.019 12 C -0.217 4.217 13 C 0.114 3.886 14 O -0.076 6.076 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.265 4.265 24 C -0.062 4.062 25 C -0.043 4.043 26 C 0.014 3.986 27 H 0.080 0.920 28 C -0.201 4.201 29 O -0.297 6.297 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.167 -2.201 23.736 23.867 hybrid contribution 0.489 0.807 -0.504 1.070 sum 1.656 -1.394 23.232 23.333 Atomic orbital electron populations 1.21725 0.92180 1.03249 1.02888 1.22485 0.95517 0.95338 0.84928 0.92056 1.22245 0.80413 1.01709 0.99410 1.48133 1.06434 1.64460 1.16954 1.18512 0.87558 0.77514 0.82857 1.91001 1.77016 1.45686 1.24478 1.22694 0.92425 1.13976 0.99634 1.22377 0.98063 0.86702 0.91877 1.18284 1.06496 1.00176 0.93466 1.20420 0.91982 0.96104 0.93404 1.20000 1.06972 1.00187 0.94556 1.19531 0.91004 0.92546 0.85519 1.83929 1.56517 1.50032 1.17080 1.21375 1.16197 1.13614 0.95400 0.88967 1.25328 0.95892 0.98359 0.97009 1.70023 1.22100 1.37359 1.19928 0.85701 0.78438 0.79718 0.79516 1.19830 1.20235 1.19159 1.20964 1.05634 1.02396 0.97457 1.20711 0.97022 0.95883 0.92598 1.22559 0.99973 0.97963 0.83830 1.22560 0.81856 0.99110 0.95060 0.91964 1.21732 1.01517 1.01383 0.95458 1.87940 1.20583 1.77584 1.43544 0.91538 0.91562 0.90537 0.87962 0.91064 0.85931 0.85945 0.88181 0.86818 0.91953 0.85631 0.87623 0.90802 0.88520 0.91531 0.90758 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.57 37.16 0.36 -0.83 16 2 C 0.08 0.78 3.40 -26.58 -0.09 0.68 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.09 1.03 5.90 -3.54 -0.02 1.00 16 5 N -0.62 -7.79 3.01 -173.72 -0.52 -8.32 16 6 C 0.54 8.36 6.83 -13.04 -0.09 8.27 16 7 O -0.51 -10.07 11.99 5.17 0.06 -10.01 16 8 C -0.27 -3.40 9.24 -37.51 -0.35 -3.75 16 9 C 0.03 0.41 9.77 -37.19 -0.36 0.05 16 10 C -0.18 -3.40 4.34 -105.02 -0.46 -3.85 16 11 C 0.00 -0.01 6.78 -39.15 -0.27 -0.28 16 12 C -0.20 -4.57 9.97 -39.47 -0.39 -4.96 16 13 C 0.17 4.32 6.65 -38.89 -0.26 4.06 16 14 O -0.17 -5.12 9.74 0.73 0.01 -5.11 16 15 C -0.39 -11.14 9.42 30.91 0.29 -10.85 16 16 H 0.09 2.44 5.31 -52.49 -0.28 2.16 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 19 Si 0.94 20.79 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.25 -5.63 9.10 -39.47 -0.36 -5.99 16 24 C -0.04 -0.86 9.78 -39.15 -0.38 -1.24 16 25 C 0.08 0.72 5.87 -3.31 -0.02 0.70 16 26 C 0.07 0.61 3.41 -26.36 -0.09 0.52 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -0.85 9.57 37.15 0.36 -0.49 16 29 O -0.38 -3.94 10.03 -35.23 -0.35 -4.29 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.10 1.42 7.12 -51.92 -0.37 1.05 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.12 1.11 5.94 -52.48 -0.31 0.80 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.10 1.84 7.46 -52.49 -0.39 1.45 16 38 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 2.86 5.72 -52.48 -0.30 2.56 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.69 5.41 -51.93 -0.28 0.41 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -34.29 375.28 -8.21 -42.50 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.56 Total: 4.61 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.23 Total: -15.97 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.23 Total: -33.16 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.28 Total: -19.41 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.29 -8.21 -42.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229769633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.266 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds