Wall clock time and date at job start Tue Mar 31 2020 17:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.55360 * 2 1 4 4 C 1.53293 * 109.51787 * 239.86943 * 2 1 3 5 5 N 1.47141 * 108.38955 * 187.77306 * 4 2 1 6 6 C 1.34782 * 120.98916 * 230.51386 * 5 4 2 7 7 O 1.21724 * 119.99420 * 354.71071 * 6 5 4 8 8 C 1.46252 * 120.00510 * 174.98762 * 6 5 4 9 9 C 1.35019 * 120.00167 * 172.53095 * 8 6 5 10 10 C 1.46968 * 119.99972 * 348.93823 * 9 8 6 11 11 C 1.40027 * 120.10136 * 311.84601 * 10 9 8 12 12 C 1.37596 * 119.89579 * 179.78447 * 11 10 9 13 13 C 1.39180 * 120.09939 * 0.48731 * 12 11 10 14 14 O 1.35573 * 119.89538 * 179.71752 * 13 12 11 15 15 C 1.34782 * 116.99653 * 186.69720 * 14 13 12 16 16 H 1.07998 * 120.00567 * 5.86776 * 15 14 13 17 17 C 1.38727 * 119.99573 * 185.86972 * 15 14 13 18 18 N 1.31501 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99582 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47283 * 90.00101 * 19 17 15 21 21 H 1.48501 * 109.47249 * 210.00044 * 19 17 15 22 22 H 1.48501 * 109.47555 * 329.99790 * 19 17 15 23 23 C 1.39171 * 120.20208 * 359.74268 * 13 12 11 24 24 C 1.37594 * 120.10722 * 0.02562 * 23 13 12 25 25 C 1.47159 * 118.03709 * 50.78978 * 5 4 2 26 26 C 1.53720 * 108.15745 * 309.15608 * 25 5 4 27 27 H 1.08996 * 109.65926 * 292.57515 * 26 25 5 28 28 C 1.52995 * 109.44226 * 172.36845 * 26 25 5 29 29 O 1.42966 * 109.51157 * 120.12260 * 2 1 3 30 30 H 1.08998 * 109.46828 * 180.12693 * 1 2 3 31 31 H 1.09000 * 109.47245 * 300.12987 * 1 2 3 32 32 H 1.09009 * 109.46737 * 60.12881 * 1 2 3 33 33 H 1.09008 * 109.67660 * 68.04764 * 4 2 1 34 34 H 1.08996 * 109.70960 * 307.52088 * 4 2 1 35 35 H 1.08003 * 119.99714 * 352.53159 * 8 6 5 36 36 H 1.07995 * 119.99979 * 168.94624 * 9 8 6 37 37 H 1.07998 * 120.05091 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.95009 * 180.22905 * 12 11 10 39 39 H 0.97005 * 119.99623 * 180.02562 * 18 17 15 40 40 H 1.08010 * 119.94500 * 179.97438 * 23 13 12 41 41 H 1.07998 * 120.05480 * 179.97438 * 24 23 13 42 42 H 1.08996 * 109.67989 * 68.93027 * 25 5 4 43 43 H 1.08990 * 109.68414 * 189.49408 * 25 5 4 44 44 H 1.09001 * 109.47676 * 300.39180 * 28 26 25 45 45 H 1.09009 * 109.47044 * 60.39034 * 28 26 25 46 46 H 1.08995 * 109.47374 * 180.38736 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7253 -1.2496 5 7 3.5011 -0.8762 -1.1335 6 6 4.3194 -0.5043 -2.1378 7 8 3.8512 -0.1260 -3.1958 8 6 5.7698 -0.5610 -1.9586 9 6 6.5891 -0.3345 -3.0077 10 6 6.0394 -0.2726 -4.3693 11 6 5.1638 -1.2685 -4.8192 12 6 4.6483 -1.2040 -6.0932 13 6 5.0037 -0.1565 -6.9379 14 8 4.4977 -0.1001 -8.1944 15 6 4.9853 0.8575 -9.0079 16 1 5.8098 1.4744 -8.6823 17 6 4.4280 1.0508 -10.2635 18 7 3.4244 0.2993 -10.6601 19 14 5.1032 2.3784 -11.3907 20 1 6.1863 1.8094 -12.2325 21 1 4.0147 2.8882 -12.2627 22 1 5.6456 3.4932 -10.5732 23 6 5.8773 0.8330 -6.4967 24 6 6.3942 0.7793 -5.2226 25 6 4.0403 -1.4510 0.1093 26 6 3.4313 -0.6854 1.2949 27 1 3.8029 0.3393 1.2996 28 6 3.8211 -1.3776 2.6024 29 8 2.0075 -0.6763 1.1656 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3634 0.5158 0.8888 32 1 -0.3633 0.5119 -0.8912 33 1 1.8031 -0.1399 -2.1376 34 1 1.5759 -1.7079 -1.3213 35 1 6.1855 -0.7840 -0.9871 36 1 7.6482 -0.1990 -2.8463 37 1 4.8913 -2.0843 -4.1660 38 1 3.9700 -1.9696 -6.4398 39 1 3.0349 0.4342 -11.5383 40 1 6.1507 1.6438 -7.1558 41 1 7.0724 1.5474 -4.8813 42 1 3.7718 -2.5055 0.1727 43 1 5.1251 -1.3465 0.1217 44 1 3.4507 -2.4027 2.5954 45 1 4.9068 -1.3842 2.7004 46 1 3.3838 -0.8390 3.4431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229769633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:49 Heat of formation + Delta-G solvation = -71.173061 kcal Electronic energy + Delta-G solvation = -28056.695917 eV Core-core repulsion = 24105.319187 eV Total energy + Delta-G solvation = -3951.376729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52409 -40.71427 -39.66579 -38.13839 -35.78596 -34.99326 -34.52892 -33.89115 -31.84444 -31.29363 -29.86596 -28.04486 -27.44056 -26.98869 -24.29233 -23.50762 -22.95541 -22.51948 -21.59283 -19.98531 -19.53898 -18.81243 -18.47731 -17.78717 -17.09065 -16.64626 -16.39984 -16.24961 -16.20331 -15.70648 -15.53618 -15.34630 -15.16647 -14.68616 -14.56755 -14.43318 -14.12968 -13.98335 -13.71893 -13.57150 -13.40325 -13.11975 -13.06466 -12.89729 -12.82980 -12.66891 -12.55296 -12.34572 -12.17816 -12.11457 -12.02452 -11.69432 -11.30158 -11.13771 -10.90798 -10.62008 -10.42158 -9.75805 -9.46373 -8.61117 -8.49743 -6.16695 -0.01139 0.68302 1.04451 1.32977 1.44439 1.51528 1.93392 2.16480 2.36899 2.62140 2.84787 3.19635 3.48905 3.56294 3.69467 3.84568 3.93108 3.95595 4.07823 4.09311 4.12895 4.14978 4.30850 4.39807 4.46332 4.53132 4.60754 4.65807 4.72278 4.74761 4.79829 4.91354 4.99584 5.02653 5.06807 5.07656 5.17134 5.20502 5.23004 5.33628 5.36889 5.48656 5.64454 5.70950 5.79513 6.00838 6.18371 6.22644 6.41588 6.94497 7.27149 7.76785 8.74003 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002485 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.799104 B =11262.699210 C =12093.706673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.055 0.945 4 C 0.082 3.918 5 N -0.620 5.620 6 C 0.529 3.471 7 O -0.565 6.565 8 C -0.234 4.234 9 C 0.012 3.988 10 C -0.153 4.153 11 C 0.000 4.000 12 C -0.216 4.216 13 C 0.124 3.876 14 O -0.232 6.232 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.022 2.978 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.252 1.252 23 C -0.253 4.253 24 C -0.049 4.049 25 C 0.075 3.925 26 C 0.068 3.932 27 H 0.063 0.937 28 C -0.138 4.138 29 O -0.387 6.387 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -1.611 29.041 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.073 0.927 4 C -0.041 4.041 5 N -0.353 5.353 6 C 0.321 3.679 7 O -0.445 6.445 8 C -0.254 4.254 9 C -0.007 4.007 10 C -0.154 4.154 11 C -0.018 4.018 12 C -0.235 4.235 13 C 0.074 3.926 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.120 0.880 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.841 3.159 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.176 1.176 23 C -0.272 4.272 24 C -0.067 4.067 25 C -0.046 4.046 26 C 0.009 3.991 27 H 0.081 0.919 28 C -0.195 4.195 29 O -0.307 6.307 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.193 0.807 36 H 0.191 0.809 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.100 0.900 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.062 -1.672 28.335 28.673 hybrid contribution -0.395 0.484 -1.310 1.452 sum 3.667 -1.188 27.025 27.298 Atomic orbital electron populations 1.21726 0.90984 1.03597 1.03480 1.22392 0.96494 0.94571 0.84089 0.92679 1.22257 0.80770 1.01649 0.99438 1.48257 1.06397 1.63110 1.17585 1.19194 0.89148 0.76962 0.82557 1.91004 1.78178 1.48436 1.26869 1.23116 0.90375 1.10208 1.01739 1.22641 1.00672 0.88422 0.88988 1.18873 1.03101 0.97742 0.95695 1.20647 0.91865 0.97246 0.92030 1.20180 1.07648 0.99790 0.95921 1.20007 0.92836 0.94489 0.85300 1.83891 1.59048 1.51851 1.18998 1.21868 1.17050 1.13884 0.96240 0.88036 1.26691 0.96106 1.00987 0.98441 1.70178 1.24616 1.40289 1.20845 0.84546 0.77980 0.76400 0.76991 1.18475 1.19530 1.17595 1.21103 1.05394 1.01581 0.99146 1.21158 0.97235 0.97128 0.91218 1.22887 1.01522 0.98217 0.82011 1.22782 0.80719 0.99462 0.96099 0.91938 1.21748 1.03136 1.00895 0.93759 1.87951 1.22119 1.77495 1.43143 0.91316 0.90597 0.90332 0.90643 0.90827 0.80698 0.80858 0.86427 0.88082 0.91758 0.86234 0.83407 0.89979 0.85722 0.91559 0.88227 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.57 71.98 0.69 -1.52 16 2 C 0.08 1.61 3.40 30.69 0.10 1.71 16 3 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 4 C 0.08 1.94 5.90 86.36 0.51 2.45 16 5 N -0.62 -13.92 3.01 -821.73 -2.48 -16.39 16 6 C 0.53 14.82 6.83 86.32 0.59 15.40 16 7 O -0.56 -22.24 11.99 -4.42 -0.05 -22.29 16 8 C -0.23 -4.63 9.24 23.61 0.22 -4.41 16 9 C 0.01 0.27 9.77 23.82 0.23 0.50 16 10 C -0.15 -5.30 4.34 -20.12 -0.09 -5.39 16 11 C 0.00 0.02 6.78 22.55 0.15 0.17 16 12 C -0.22 -10.62 9.97 22.34 0.22 -10.39 16 13 C 0.12 6.82 6.65 22.72 0.15 6.97 16 14 O -0.23 -14.92 9.74 -20.30 -0.20 -15.12 16 15 C -0.41 -25.34 9.42 67.94 0.64 -24.70 16 16 H 0.10 5.69 5.31 -2.91 -0.02 5.68 16 17 C -0.02 -1.47 5.49 84.86 0.47 -1.01 16 18 N -0.92 -58.73 13.67 21.62 0.30 -58.43 16 19 Si 1.02 44.27 29.55 68.60 2.03 46.30 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.25 -11.98 9.10 22.34 0.20 -11.78 16 24 C -0.05 -1.85 9.78 22.55 0.22 -1.63 16 25 C 0.08 1.02 5.87 86.50 0.51 1.53 16 26 C 0.07 0.89 3.41 30.83 0.11 1.00 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 C -0.14 -1.06 9.57 71.98 0.69 -0.37 16 29 O -0.39 -7.18 10.03 -148.98 -1.49 -8.68 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 2.20 7.12 -2.38 -0.02 2.18 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.18 1.69 5.94 -2.91 -0.02 1.67 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.12 4.21 7.46 -2.91 -0.02 4.19 16 38 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 39 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 40 H 0.12 5.67 5.72 -2.91 -0.02 5.65 16 41 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.12 0.94 5.41 -2.39 -0.01 0.93 16 44 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -84.61 375.28 4.70 -79.91 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.98 Total: 26.19 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 5.61 Total: -31.48 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.18 Total: -74.82 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.74 Total: -46.09 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -84.61 4.70 -79.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229769633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.732 kcal (2) G-P(sol) polarization free energy of solvation -84.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds