Wall clock time and date at job start Tue Mar 31 2020 17:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47068 * 2 1 4 4 C 1.54805 * 109.47288 * 240.00336 * 2 1 3 5 5 N 1.45130 * 109.54189 * 172.12214 * 4 2 1 6 6 C 1.34771 * 118.75628 * 269.27801 * 5 4 2 7 7 O 1.21729 * 119.99843 * 355.53995 * 6 5 4 8 8 C 1.46254 * 120.00226 * 175.53897 * 6 5 4 9 9 C 1.35020 * 119.99966 * 172.88380 * 8 6 5 10 10 C 1.46959 * 120.00306 * 348.80602 * 9 8 6 11 11 C 1.40022 * 120.09739 * 311.96280 * 10 9 8 12 12 C 1.37607 * 119.89515 * 179.71795 * 11 10 9 13 13 C 1.39182 * 120.09580 * 0.53710 * 12 11 10 14 14 O 1.35573 * 119.89489 * 179.74193 * 13 12 11 15 15 C 1.34777 * 116.99897 * 186.78369 * 14 13 12 16 16 H 1.08002 * 120.00056 * 5.92790 * 15 14 13 17 17 C 1.38726 * 119.99930 * 185.92087 * 15 14 13 18 18 N 1.31507 * 119.99893 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46934 * 60.00311 * 19 17 15 21 21 H 1.48500 * 109.47198 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47506 * 300.00678 * 19 17 15 23 23 C 1.39172 * 120.20770 * 359.75603 * 13 12 11 24 24 C 1.37605 * 120.09933 * 359.96237 * 23 13 12 25 25 C 1.47490 * 122.49488 * 89.26059 * 5 4 2 26 26 C 1.53572 * 111.04250 * 318.41102 * 25 5 4 27 27 C 1.51540 * 109.56223 * 319.99003 * 26 25 5 28 28 O 1.38021 * 109.46977 * 119.99458 * 2 1 3 29 29 H 1.08997 * 109.47440 * 300.00055 * 1 2 3 30 30 H 1.09000 * 109.47122 * 60.00755 * 1 2 3 31 31 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45696 * 292.14110 * 4 2 1 33 33 H 1.09000 * 109.46025 * 52.09741 * 4 2 1 34 34 H 1.08003 * 119.99466 * 352.88562 * 8 6 5 35 35 H 1.08003 * 119.99379 * 168.80887 * 9 8 6 36 36 H 1.08001 * 120.05672 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.95368 * 180.27487 * 12 11 10 38 38 H 0.97001 * 119.99860 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.95187 * 179.97438 * 23 13 12 40 40 H 1.07994 * 120.04980 * 180.02562 * 24 23 13 41 41 H 1.09003 * 109.17850 * 197.99520 * 25 5 4 42 42 H 1.09002 * 109.14711 * 78.80670 * 25 5 4 43 43 H 1.08998 * 109.45523 * 199.96877 * 26 25 5 44 44 H 1.08999 * 109.45522 * 80.01226 * 26 25 5 45 45 H 1.08994 * 109.59304 * 211.19078 * 27 26 25 46 46 H 1.09000 * 109.59051 * 331.48603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2640 5 7 3.4851 -0.5704 -1.3630 6 6 3.9754 0.4793 -2.0515 7 8 3.2181 1.2259 -2.6439 8 6 5.4173 0.7215 -2.0871 9 6 5.9208 1.6831 -2.8901 10 6 5.0655 2.3164 -3.9035 11 6 4.2801 1.5269 -4.7523 12 6 3.4763 2.1245 -5.6959 13 6 3.4518 3.5110 -5.8147 14 8 2.6624 4.0953 -6.7493 15 6 2.7875 5.4276 -6.9096 16 1 3.5579 5.9656 -6.3771 17 6 1.9267 6.1079 -7.7586 18 7 0.9884 5.4529 -8.4066 19 14 2.0996 7.9546 -7.9802 20 1 3.4500 8.2647 -8.5146 21 1 1.0671 8.4378 -8.9319 22 1 1.9189 8.6296 -6.6698 23 6 4.2354 4.2995 -4.9774 24 6 5.0378 3.7109 -4.0270 25 6 4.4315 -1.5134 -0.7382 26 6 3.9599 -1.9190 0.6659 27 6 3.3879 -0.7097 1.3780 28 8 1.9900 -0.6505 1.1270 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8018 -1.7898 -1.1964 33 1 1.5718 -0.3038 -2.1482 34 1 6.0793 0.1311 -1.4709 35 1 6.9522 1.9868 -2.7876 36 1 4.3019 0.4507 -4.6638 37 1 2.8668 1.5166 -6.3480 38 1 0.3863 5.9286 -8.9999 39 1 4.2136 5.3750 -5.0734 40 1 5.6453 4.3235 -3.3774 41 1 5.4112 -1.0412 -0.6642 42 1 4.5111 -2.4049 -1.3604 43 1 4.8044 -2.3089 1.2340 44 1 3.1921 -2.6882 0.5829 45 1 3.5633 -0.8000 2.4499 46 1 3.8672 0.1951 1.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255028629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:27 Heat of formation + Delta-G solvation = -43.477071 kcal Electronic energy + Delta-G solvation = -28493.600399 eV Core-core repulsion = 24543.424658 eV Total energy + Delta-G solvation = -3950.175741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63104 -39.12183 -38.44814 -36.54549 -35.43815 -33.85646 -33.00364 -32.12718 -30.49470 -30.12509 -28.47365 -27.08149 -25.88258 -25.31789 -23.11383 -21.94010 -21.70938 -21.48222 -20.41536 -18.46637 -17.90633 -17.53326 -16.91794 -16.74832 -16.44572 -16.05182 -15.05034 -14.79574 -14.57006 -14.47290 -14.00107 -13.92671 -13.69443 -13.56765 -13.44745 -13.06287 -12.92144 -12.78385 -12.58437 -12.45187 -12.20684 -12.02304 -11.76147 -11.68021 -11.53048 -11.41673 -11.20327 -10.97892 -10.72436 -10.64389 -10.60407 -10.39410 -9.78832 -9.51091 -9.41282 -9.16645 -8.71140 -8.57520 -7.95867 -6.88958 -6.45174 -4.01169 1.24672 2.40939 2.64302 3.00768 3.13861 3.15928 3.17750 3.47061 3.55670 3.97662 4.44512 4.53700 4.63911 4.70075 4.74512 4.94652 5.03446 5.07558 5.12183 5.16344 5.22097 5.32676 5.37476 5.39812 5.48001 5.52931 5.59872 5.68407 5.69569 5.72909 5.82055 5.84664 5.91324 6.05919 6.23601 6.29186 6.39578 6.54736 6.64955 6.78415 7.02697 7.11906 7.32683 7.37658 7.43941 7.50165 7.52399 7.91733 8.01034 8.46920 9.00357 9.72647 10.72713 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.002740 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.076868 B =10218.002323 C =11026.595407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.052 0.948 4 C 0.083 3.917 5 N -0.619 5.619 6 C 0.536 3.464 7 O -0.505 6.505 8 C -0.269 4.269 9 C 0.028 3.972 10 C -0.183 4.183 11 C 0.000 4.000 12 C -0.198 4.198 13 C 0.169 3.831 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.245 4.245 24 C -0.044 4.044 25 C 0.105 3.895 26 C -0.167 4.167 27 C 0.076 3.924 28 O -0.389 6.389 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 -13.689 18.024 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.070 0.930 4 C -0.041 4.041 5 N -0.354 5.354 6 C 0.327 3.673 7 O -0.381 6.381 8 C -0.290 4.290 9 C 0.008 3.992 10 C -0.183 4.183 11 C -0.018 4.018 12 C -0.218 4.218 13 C 0.114 3.886 14 O -0.075 6.075 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.265 4.265 24 C -0.062 4.062 25 C -0.018 4.018 26 C -0.205 4.205 27 C -0.001 4.001 28 O -0.308 6.308 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.764 -13.407 17.459 23.029 hybrid contribution 0.409 0.869 -0.086 0.964 sum 7.174 -12.538 17.373 22.594 Atomic orbital electron populations 1.21716 0.92341 1.02796 1.02954 1.22009 0.95097 0.95191 0.85038 0.92978 1.22292 0.80808 1.01063 0.99890 1.47865 1.06019 1.27079 1.54419 1.18596 0.89720 0.80375 0.78582 1.90999 1.59896 1.45074 1.42127 1.22796 0.94010 1.05294 1.06887 1.22377 0.97732 0.89825 0.89216 1.18274 1.05462 0.93269 1.01339 1.20415 0.91993 0.97200 0.92240 1.20001 1.05562 0.91956 1.04238 1.19528 0.89419 0.92099 0.87530 1.83927 1.52744 1.23708 1.47163 1.21327 1.17105 0.80400 1.27815 0.89029 1.25322 0.94917 1.00453 0.95842 1.70012 1.16854 1.36570 1.25998 0.85777 0.78455 0.80520 0.78670 1.19444 1.20249 1.19458 1.20961 1.04239 1.00263 1.01001 1.20711 0.96739 0.92977 0.95803 1.21997 0.93099 0.93262 0.93427 1.22491 1.02201 0.99841 0.95973 1.22124 0.81190 0.97178 0.99575 1.86229 1.23245 1.77122 1.44189 0.91746 0.90508 0.91860 0.90534 0.88673 0.85816 0.86057 0.88198 0.86838 0.91897 0.85661 0.87664 0.89353 0.91787 0.89701 0.90301 0.89395 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.55 37.15 0.35 -1.08 16 2 C 0.09 1.02 3.26 -25.78 -0.08 0.94 16 3 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 4 C 0.08 1.00 4.90 -3.83 -0.02 0.98 16 5 N -0.62 -7.39 2.19 -174.18 -0.38 -7.78 16 6 C 0.54 8.04 6.75 -13.04 -0.09 7.95 16 7 O -0.51 -9.87 11.90 5.16 0.06 -9.81 16 8 C -0.27 -3.39 9.17 -37.51 -0.34 -3.74 16 9 C 0.03 0.39 9.77 -37.19 -0.36 0.03 16 10 C -0.18 -3.37 4.34 -105.03 -0.46 -3.82 16 11 C 0.00 0.00 6.78 -39.14 -0.27 -0.26 16 12 C -0.20 -4.56 9.97 -39.46 -0.39 -4.95 16 13 C 0.17 4.31 6.65 -38.88 -0.26 4.05 16 14 O -0.17 -5.11 9.74 0.74 0.01 -5.10 16 15 C -0.39 -11.15 9.42 30.91 0.29 -10.86 16 16 H 0.09 2.42 5.31 -52.49 -0.28 2.14 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.59 13.67 55.48 0.76 -24.84 16 19 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.25 -5.63 9.10 -39.47 -0.36 -5.99 16 24 C -0.04 -0.86 9.78 -39.15 -0.38 -1.24 16 25 C 0.10 0.85 6.06 -3.20 -0.02 0.83 16 26 C -0.17 -1.15 5.79 -27.17 -0.16 -1.31 16 27 C 0.08 0.66 6.37 36.42 0.23 0.90 16 28 O -0.39 -4.38 9.46 -26.56 -0.25 -4.63 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 33 H 0.10 1.35 7.21 -51.93 -0.37 0.97 16 34 H 0.12 1.10 5.78 -52.48 -0.30 0.80 16 35 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.10 1.82 7.45 -52.49 -0.39 1.43 16 37 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 2.85 5.72 -52.49 -0.30 2.55 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.09 0.61 5.24 -51.93 -0.27 0.33 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.53 7.41 -51.93 -0.38 0.15 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -33.96 370.74 -8.16 -42.12 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.51 Total: 5.26 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.41 Total: -16.56 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.38 Total: -32.61 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.18 Total: -19.54 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.96 -8.16 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255028629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.360 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds