Wall clock time and date at job start Tue Mar 31 2020 17:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47068 * 2 1 4 4 C 1.54805 * 109.47288 * 240.00336 * 2 1 3 5 5 N 1.45130 * 109.54189 * 172.12214 * 4 2 1 6 6 C 1.34771 * 118.75628 * 269.27801 * 5 4 2 7 7 O 1.21729 * 119.99843 * 355.53995 * 6 5 4 8 8 C 1.46254 * 120.00226 * 175.53897 * 6 5 4 9 9 C 1.35020 * 119.99966 * 172.88380 * 8 6 5 10 10 C 1.46959 * 120.00306 * 348.80602 * 9 8 6 11 11 C 1.40022 * 120.09739 * 311.96280 * 10 9 8 12 12 C 1.37607 * 119.89515 * 179.71795 * 11 10 9 13 13 C 1.39182 * 120.09580 * 0.53710 * 12 11 10 14 14 O 1.35573 * 119.89489 * 179.74193 * 13 12 11 15 15 C 1.34777 * 116.99897 * 186.78369 * 14 13 12 16 16 H 1.08002 * 120.00056 * 5.92790 * 15 14 13 17 17 C 1.38726 * 119.99930 * 185.92087 * 15 14 13 18 18 N 1.31507 * 119.99893 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00052 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46934 * 60.00311 * 19 17 15 21 21 H 1.48500 * 109.47198 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47506 * 300.00678 * 19 17 15 23 23 C 1.39172 * 120.20770 * 359.75603 * 13 12 11 24 24 C 1.37605 * 120.09933 * 359.96237 * 23 13 12 25 25 C 1.47490 * 122.49488 * 89.26059 * 5 4 2 26 26 C 1.53572 * 111.04250 * 318.41102 * 25 5 4 27 27 C 1.51540 * 109.56223 * 319.99003 * 26 25 5 28 28 O 1.38021 * 109.46977 * 119.99458 * 2 1 3 29 29 H 1.08997 * 109.47440 * 300.00055 * 1 2 3 30 30 H 1.09000 * 109.47122 * 60.00755 * 1 2 3 31 31 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45696 * 292.14110 * 4 2 1 33 33 H 1.09000 * 109.46025 * 52.09741 * 4 2 1 34 34 H 1.08003 * 119.99466 * 352.88562 * 8 6 5 35 35 H 1.08003 * 119.99379 * 168.80887 * 9 8 6 36 36 H 1.08001 * 120.05672 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.95368 * 180.27487 * 12 11 10 38 38 H 0.97001 * 119.99860 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.95187 * 179.97438 * 23 13 12 40 40 H 1.07994 * 120.04980 * 180.02562 * 24 23 13 41 41 H 1.09003 * 109.17850 * 197.99520 * 25 5 4 42 42 H 1.09002 * 109.14711 * 78.80670 * 25 5 4 43 43 H 1.08998 * 109.45523 * 199.96877 * 26 25 5 44 44 H 1.08999 * 109.45522 * 80.01226 * 26 25 5 45 45 H 1.08994 * 109.59304 * 211.19078 * 27 26 25 46 46 H 1.09000 * 109.59051 * 331.48603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2640 5 7 3.4851 -0.5704 -1.3630 6 6 3.9754 0.4793 -2.0515 7 8 3.2181 1.2259 -2.6439 8 6 5.4173 0.7215 -2.0871 9 6 5.9208 1.6831 -2.8901 10 6 5.0655 2.3164 -3.9035 11 6 4.2801 1.5269 -4.7523 12 6 3.4763 2.1245 -5.6959 13 6 3.4518 3.5110 -5.8147 14 8 2.6624 4.0953 -6.7493 15 6 2.7875 5.4276 -6.9096 16 1 3.5579 5.9656 -6.3771 17 6 1.9267 6.1079 -7.7586 18 7 0.9884 5.4529 -8.4066 19 14 2.0996 7.9546 -7.9802 20 1 3.4500 8.2647 -8.5146 21 1 1.0671 8.4378 -8.9319 22 1 1.9189 8.6296 -6.6698 23 6 4.2354 4.2995 -4.9774 24 6 5.0378 3.7109 -4.0270 25 6 4.4315 -1.5134 -0.7382 26 6 3.9599 -1.9190 0.6659 27 6 3.3879 -0.7097 1.3780 28 8 1.9900 -0.6505 1.1270 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8018 -1.7898 -1.1964 33 1 1.5718 -0.3038 -2.1482 34 1 6.0793 0.1311 -1.4709 35 1 6.9522 1.9868 -2.7876 36 1 4.3019 0.4507 -4.6638 37 1 2.8668 1.5166 -6.3480 38 1 0.3863 5.9286 -8.9999 39 1 4.2136 5.3750 -5.0734 40 1 5.6453 4.3235 -3.3774 41 1 5.4112 -1.0412 -0.6642 42 1 4.5111 -2.4049 -1.3604 43 1 4.8044 -2.3089 1.2340 44 1 3.1921 -2.6882 0.5829 45 1 3.5633 -0.8000 2.4499 46 1 3.8672 0.1951 1.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255028629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:26 Heat of formation + Delta-G solvation = -64.998820 kcal Electronic energy + Delta-G solvation = -28494.533652 eV Core-core repulsion = 24543.424658 eV Total energy + Delta-G solvation = -3951.108994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65555 -40.72945 -39.72363 -38.18560 -36.45764 -34.86367 -34.42986 -33.88053 -31.84026 -31.36698 -29.89849 -28.16063 -27.36186 -26.67329 -24.35586 -23.53736 -22.95106 -22.31277 -21.72961 -19.94015 -19.43804 -18.86656 -18.42572 -17.72701 -17.44582 -16.95482 -16.41285 -16.31895 -16.15232 -15.75802 -15.54308 -15.29295 -15.10405 -14.66822 -14.62981 -14.47740 -14.17000 -13.96824 -13.72746 -13.59420 -13.52575 -13.37090 -13.01968 -12.94577 -12.64364 -12.62105 -12.39317 -12.35726 -12.16691 -12.14369 -11.86383 -11.52241 -11.29734 -10.90741 -10.64299 -10.59618 -10.40360 -9.77893 -9.44531 -8.60296 -8.49498 -6.16579 0.00216 0.68676 1.05827 1.32756 1.45683 1.50000 2.07289 2.16698 2.40051 2.68228 2.85040 3.19964 3.49349 3.68814 3.73294 3.84738 3.92747 4.05659 4.09703 4.12194 4.15462 4.18441 4.30706 4.46307 4.50232 4.53973 4.55123 4.71585 4.73830 4.75908 4.78286 4.88406 4.98111 5.03079 5.07783 5.09654 5.15292 5.21589 5.23016 5.25963 5.40925 5.63414 5.67383 5.71270 5.80616 6.00874 6.23025 6.40656 6.64044 6.94592 7.33596 7.76937 8.74030 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.002740 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.076868 B =10218.002323 C =11026.595407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 H 0.021 0.979 4 C 0.084 3.916 5 N -0.612 5.612 6 C 0.520 3.480 7 O -0.564 6.564 8 C -0.236 4.236 9 C 0.008 3.992 10 C -0.152 4.152 11 C 0.002 3.998 12 C -0.216 4.216 13 C 0.125 3.875 14 O -0.231 6.231 15 C -0.416 4.416 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.254 1.254 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.051 4.051 25 C 0.095 3.905 26 C -0.157 4.157 27 C 0.065 3.935 28 O -0.398 6.398 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.274 0.726 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.365 -15.363 21.865 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.040 4.040 5 N -0.345 5.345 6 C 0.312 3.688 7 O -0.444 6.444 8 C -0.255 4.255 9 C -0.011 4.011 10 C -0.153 4.153 11 C -0.016 4.016 12 C -0.235 4.235 13 C 0.074 3.926 14 O -0.138 6.138 15 C -0.492 4.492 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.840 3.160 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.273 4.273 24 C -0.069 4.069 25 C -0.025 4.025 26 C -0.195 4.195 27 C -0.010 4.010 28 O -0.317 6.317 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.194 0.806 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.164 0.836 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.503 -15.163 21.380 28.237 hybrid contribution -0.556 0.956 -0.851 1.396 sum 9.946 -14.207 20.529 26.874 Atomic orbital electron populations 1.21704 0.91579 1.03651 1.02729 1.21811 0.95813 0.93512 0.85328 0.96068 1.22251 0.81164 1.01862 0.98730 1.48007 1.06493 1.26705 1.53267 1.19255 0.90809 0.80424 0.78270 1.91002 1.61408 1.47342 1.44677 1.23232 0.92907 1.03509 1.05902 1.22629 0.99287 0.90376 0.88836 1.18859 1.03097 0.92963 1.00356 1.20643 0.91355 0.98273 0.91367 1.20187 1.06688 0.91337 1.05336 1.20000 0.90631 0.93255 0.88694 1.83888 1.55513 1.24302 1.50074 1.21829 1.18004 0.80695 1.28649 0.88093 1.26679 0.94188 1.06180 0.95077 1.70171 1.18755 1.38996 1.27995 0.84622 0.79137 0.73144 0.79121 1.17833 1.19445 1.18207 1.21099 1.04570 0.99984 1.01634 1.21151 0.96303 0.94128 0.95279 1.22378 0.92905 0.93091 0.94172 1.22445 1.03257 0.98614 0.95215 1.22415 0.79801 0.97614 1.01216 1.86227 1.25103 1.76779 1.43596 0.91319 0.91437 0.90425 0.88611 0.91672 0.80615 0.81125 0.86358 0.88049 0.91742 0.86286 0.83565 0.87124 0.90261 0.86211 0.90717 0.87304 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.55 71.98 0.69 -2.17 16 2 C 0.10 2.23 3.26 31.21 0.10 2.33 16 3 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 4 C 0.08 1.96 4.90 87.25 0.43 2.39 16 5 N -0.61 -12.97 2.19 -823.18 -1.81 -14.78 16 6 C 0.52 14.31 6.75 86.33 0.58 14.89 16 7 O -0.56 -22.01 11.90 -4.44 -0.05 -22.07 16 8 C -0.24 -4.64 9.17 23.61 0.22 -4.42 16 9 C 0.01 0.18 9.77 23.82 0.23 0.41 16 10 C -0.15 -5.28 4.34 -20.13 -0.09 -5.37 16 11 C 0.00 0.08 6.78 22.55 0.15 0.23 16 12 C -0.22 -10.61 9.97 22.35 0.22 -10.39 16 13 C 0.12 6.86 6.65 22.72 0.15 7.01 16 14 O -0.23 -14.94 9.74 -20.26 -0.20 -15.14 16 15 C -0.42 -25.50 9.42 67.94 0.64 -24.86 16 16 H 0.10 5.67 5.31 -2.91 -0.02 5.66 16 17 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 18 N -0.92 -58.80 13.67 21.62 0.30 -58.51 16 19 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 C -0.25 -12.08 9.10 22.34 0.20 -11.87 16 24 C -0.05 -1.91 9.78 22.55 0.22 -1.69 16 25 C 0.10 1.07 6.06 86.38 0.52 1.59 16 26 C -0.16 -1.41 5.79 30.31 0.18 -1.23 16 27 C 0.07 0.92 6.37 71.50 0.46 1.37 16 28 O -0.40 -8.17 9.46 -117.94 -1.12 -9.29 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.06 1.93 7.21 -2.39 -0.02 1.91 16 34 H 0.18 1.70 5.78 -2.91 -0.02 1.68 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.12 4.20 7.45 -2.91 -0.02 4.18 16 37 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.12 5.68 5.72 -2.91 -0.02 5.66 16 40 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 0.74 5.24 -2.39 -0.01 0.72 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.80 8.01 -2.39 -0.02 0.78 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.04 0.69 7.41 -2.39 -0.02 0.67 16 Total: -1.00 -84.88 370.74 5.51 -79.37 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.99 Total: 26.76 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.37 Total: -32.73 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.51 Total: -73.29 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.37 Total: -46.50 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.88 5.51 -79.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255028629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.375 kcal (2) G-P(sol) polarization free energy of solvation -84.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds