Wall clock time and date at job start Tue Mar 31 2020 17:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46719 * 2 1 4 4 C 1.55322 * 109.40275 * 120.00733 * 2 1 3 5 5 N 1.45114 * 109.25694 * 187.88551 * 4 2 1 6 6 C 1.34778 * 118.75667 * 90.85517 * 5 4 2 7 7 O 1.21715 * 120.00357 * 4.27007 * 6 5 4 8 8 C 1.46255 * 119.99805 * 184.26919 * 6 5 4 9 9 C 1.35022 * 119.99992 * 172.90504 * 8 6 5 10 10 C 1.46967 * 119.99988 * 348.67806 * 9 8 6 11 11 C 1.40021 * 120.09751 * 311.97872 * 10 9 8 12 12 C 1.37603 * 119.89352 * 179.74300 * 11 10 9 13 13 C 1.39170 * 120.10099 * 0.53078 * 12 11 10 14 14 O 1.35576 * 119.90049 * 179.71927 * 13 12 11 15 15 C 1.34774 * 117.00421 * 185.65075 * 14 13 12 16 16 H 1.08006 * 119.99760 * 354.90876 * 15 14 13 17 17 C 1.38716 * 120.00312 * 174.90935 * 15 14 13 18 18 N 1.31508 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47341 * 120.00250 * 19 17 15 22 22 H 1.48500 * 109.47584 * 240.00588 * 19 17 15 23 23 C 1.39182 * 120.20441 * 359.75019 * 13 12 11 24 24 C 1.37589 * 120.10023 * 359.96967 * 23 13 12 25 25 C 1.47514 * 122.48717 * 270.57205 * 5 4 2 26 26 C 1.53571 * 111.02176 * 41.88555 * 25 5 4 27 27 C 1.51531 * 109.58703 * 39.98097 * 26 25 5 28 28 O 1.38015 * 109.47169 * 240.00326 * 2 1 3 29 29 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47496 * 299.99967 * 1 2 3 31 31 H 1.09001 * 109.47073 * 59.99854 * 1 2 3 32 32 H 1.09003 * 109.51082 * 68.00595 * 4 2 1 33 33 H 1.09011 * 109.69773 * 307.88052 * 4 2 1 34 34 H 1.08003 * 120.00232 * 352.90345 * 8 6 5 35 35 H 1.07997 * 120.00483 * 168.95586 * 9 8 6 36 36 H 1.08001 * 120.05718 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.94831 * 180.27869 * 12 11 10 38 38 H 0.96994 * 119.99975 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.94795 * 179.97438 * 23 13 12 40 40 H 1.08004 * 120.05558 * 180.02562 * 24 23 13 41 41 H 1.08992 * 109.16640 * 162.28185 * 25 5 4 42 42 H 1.08997 * 109.16467 * 281.48859 * 25 5 4 43 43 H 1.09005 * 109.44889 * 160.01536 * 26 25 5 44 44 H 1.09000 * 109.45606 * 279.93925 * 26 25 5 45 45 H 1.08995 * 109.58756 * 28.37685 * 27 26 25 46 46 H 1.08995 * 109.59215 * 148.67246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7327 1.2686 5 7 3.4849 -0.5702 1.3632 6 6 3.9751 0.4793 2.0521 7 8 3.2179 1.2250 2.6455 8 6 5.4169 0.7223 2.0868 9 6 5.8982 1.8491 2.6539 10 6 4.9820 2.9414 3.0107 11 6 4.0329 3.3924 2.0852 12 6 3.1736 4.4118 2.4256 13 6 3.2541 5.0018 3.6835 14 8 2.4092 6.0097 4.0126 15 6 2.6134 6.6169 5.1983 16 1 3.3681 6.2422 5.8740 17 6 1.8544 7.7231 5.5510 18 7 0.9358 8.1797 4.7281 19 14 2.1369 8.5643 7.1948 20 1 3.2192 7.8623 7.9305 21 1 2.5305 9.9778 6.9664 22 1 0.8862 8.5217 7.9942 23 6 4.1998 4.5607 4.6046 24 6 5.0593 3.5381 4.2751 25 6 4.4315 -1.5137 0.7388 26 6 3.9600 -1.9188 -0.6655 27 6 3.3881 -0.7098 -1.3777 28 8 1.9901 -0.6505 -1.1269 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8040 -1.7933 1.2002 33 1 1.5737 -0.3092 2.1552 34 1 6.0966 0.0003 1.6588 35 1 6.9571 1.9497 2.8412 36 1 3.9724 2.9379 1.1074 37 1 2.4383 4.7573 1.7141 38 1 0.4048 8.9530 4.9748 39 1 4.2589 5.0218 5.5794 40 1 5.7926 3.1962 4.9905 41 1 5.4111 -1.0417 0.6651 42 1 4.5107 -2.4053 1.3608 43 1 4.8047 -2.3088 -1.2335 44 1 3.1924 -2.6883 -0.5829 45 1 3.8654 0.1953 -1.0021 46 1 3.5658 -0.7989 -2.4494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255028632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:31 Heat of formation + Delta-G solvation = -43.056280 kcal Electronic energy + Delta-G solvation = -28681.546703 eV Core-core repulsion = 24731.389209 eV Total energy + Delta-G solvation = -3950.157494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61650 -39.10996 -38.44541 -36.55260 -35.43254 -33.82409 -33.00232 -32.12921 -30.47231 -30.13490 -28.47375 -27.06274 -25.87169 -25.32497 -23.11092 -21.91574 -21.71304 -21.47006 -20.42953 -18.46741 -17.90617 -17.53298 -16.88845 -16.74622 -16.42910 -15.99036 -15.19265 -14.71525 -14.56430 -14.42504 -14.01595 -13.89044 -13.70505 -13.52427 -13.35240 -13.28619 -12.82396 -12.79664 -12.60533 -12.45156 -12.19594 -12.00345 -11.75021 -11.70552 -11.49179 -11.37350 -11.22500 -11.00241 -10.69691 -10.62248 -10.61107 -10.41562 -9.75802 -9.48478 -9.38367 -9.18282 -8.72529 -8.55969 -7.97397 -6.89304 -6.45566 -4.01479 1.23822 2.40347 2.63089 3.01457 3.13667 3.14345 3.20009 3.49862 3.55784 3.97237 4.45946 4.54892 4.64108 4.70061 4.76636 4.95384 5.05945 5.09506 5.13227 5.17165 5.23925 5.31642 5.38351 5.40523 5.47839 5.54140 5.60339 5.70487 5.71659 5.72767 5.82336 5.83510 5.94921 6.09280 6.22093 6.28696 6.39076 6.54233 6.64827 6.77484 7.02052 7.11884 7.32652 7.38621 7.44134 7.49692 7.53887 7.90939 8.01086 8.46348 9.00230 9.72289 10.72409 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.002861 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.024391 B = 9784.779625 C =10765.823156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.054 0.946 4 C 0.084 3.916 5 N -0.620 5.620 6 C 0.536 3.464 7 O -0.505 6.505 8 C -0.269 4.269 9 C 0.028 3.972 10 C -0.182 4.182 11 C 0.000 4.000 12 C -0.198 4.198 13 C 0.169 3.831 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.246 4.246 24 C -0.044 4.044 25 C 0.105 3.895 26 C -0.166 4.166 27 C 0.076 3.924 28 O -0.388 6.388 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -19.723 -9.768 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.072 0.928 4 C -0.040 4.040 5 N -0.355 5.355 6 C 0.328 3.672 7 O -0.381 6.381 8 C -0.290 4.290 9 C 0.009 3.991 10 C -0.183 4.183 11 C -0.019 4.019 12 C -0.217 4.217 13 C 0.115 3.885 14 O -0.076 6.076 15 C -0.466 4.466 16 H 0.111 0.889 17 C -0.166 4.166 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.265 4.265 24 C -0.062 4.062 25 C -0.017 4.017 26 C -0.204 4.204 27 C -0.001 4.001 28 O -0.307 6.307 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.082 -19.105 -9.664 22.551 hybrid contribution 0.493 0.216 1.031 1.163 sum 7.575 -18.889 -8.633 22.107 Atomic orbital electron populations 1.21717 0.92355 1.02679 1.03065 1.22100 0.95080 0.95230 0.84903 0.92799 1.22388 0.80745 1.00946 0.99900 1.47866 1.06051 1.27499 1.54083 1.18595 0.89564 0.80290 0.78769 1.90991 1.59781 1.44825 1.42496 1.22794 0.94188 1.00887 1.11111 1.22385 0.98281 0.90770 0.87708 1.18280 1.02410 1.01085 0.96532 1.20382 0.91684 0.92858 0.96949 1.19993 1.04076 1.02008 0.95612 1.19513 0.88305 0.88258 0.92455 1.83907 1.46107 1.40326 1.37248 1.21436 1.21590 1.10859 0.92705 0.88869 1.25321 0.95558 0.96015 0.99678 1.70031 1.20223 1.23518 1.35662 0.85635 0.78621 0.79078 0.80034 1.19044 1.20112 1.20117 1.20962 1.01369 1.02797 1.01368 1.20711 0.97026 0.93901 0.94560 1.21988 0.93136 0.93149 0.93469 1.22482 1.02177 0.99862 0.95927 1.22121 0.81189 0.97163 0.99610 1.86225 1.23236 1.77120 1.44150 0.91959 0.90507 0.91657 0.90642 0.88777 0.85834 0.86034 0.88367 0.86844 0.92012 0.85628 0.87639 0.89349 0.91922 0.89712 0.90345 0.92785 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.56 37.16 0.36 -1.13 16 2 C 0.09 1.05 3.26 -25.50 -0.08 0.96 16 3 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.08 1.01 4.94 -3.55 -0.02 0.99 16 5 N -0.62 -7.38 2.18 -173.84 -0.38 -7.76 16 6 C 0.54 8.03 6.75 -13.04 -0.09 7.94 16 7 O -0.51 -9.83 11.91 5.18 0.06 -9.76 16 8 C -0.27 -3.38 9.12 -37.51 -0.34 -3.73 16 9 C 0.03 0.39 9.77 -37.19 -0.36 0.03 16 10 C -0.18 -3.35 4.34 -105.02 -0.46 -3.81 16 11 C 0.00 0.00 6.78 -39.15 -0.27 -0.27 16 12 C -0.20 -4.53 9.97 -39.47 -0.39 -4.92 16 13 C 0.17 4.31 6.66 -38.88 -0.26 4.06 16 14 O -0.17 -5.11 9.74 0.74 0.01 -5.10 16 15 C -0.39 -11.12 9.48 30.91 0.29 -10.83 16 16 H 0.09 2.47 5.18 -52.48 -0.27 2.20 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 19 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.25 -5.62 9.14 -39.47 -0.36 -5.99 16 24 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 25 C 0.11 0.85 6.05 -3.19 -0.02 0.84 16 26 C -0.17 -1.17 5.78 -27.18 -0.16 -1.32 16 27 C 0.08 0.68 6.38 36.41 0.23 0.92 16 28 O -0.39 -4.47 9.47 -26.54 -0.25 -4.73 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.09 1.31 7.22 -51.92 -0.37 0.94 16 34 H 0.12 1.10 5.88 -52.48 -0.31 0.79 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.10 1.78 7.45 -52.49 -0.39 1.39 16 37 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 2.85 5.62 -52.49 -0.29 2.56 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.09 0.61 5.29 -51.93 -0.27 0.34 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 45 H 0.05 0.55 7.40 -51.93 -0.38 0.17 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -33.88 370.74 -8.14 -42.02 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.50 Total: 5.28 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.40 Total: -16.52 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.38 Total: -32.52 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.18 Total: -19.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.88 -8.14 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255028632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.037 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds