Wall clock time and date at job start Tue Mar 31 2020 17:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46719 * 2 1 4 4 C 1.55322 * 109.40275 * 120.00733 * 2 1 3 5 5 N 1.45114 * 109.25694 * 187.88551 * 4 2 1 6 6 C 1.34778 * 118.75667 * 90.85517 * 5 4 2 7 7 O 1.21715 * 120.00357 * 4.27007 * 6 5 4 8 8 C 1.46255 * 119.99805 * 184.26919 * 6 5 4 9 9 C 1.35022 * 119.99992 * 172.90504 * 8 6 5 10 10 C 1.46967 * 119.99988 * 348.67806 * 9 8 6 11 11 C 1.40021 * 120.09751 * 311.97872 * 10 9 8 12 12 C 1.37603 * 119.89352 * 179.74300 * 11 10 9 13 13 C 1.39170 * 120.10099 * 0.53078 * 12 11 10 14 14 O 1.35576 * 119.90049 * 179.71927 * 13 12 11 15 15 C 1.34774 * 117.00421 * 185.65075 * 14 13 12 16 16 H 1.08006 * 119.99760 * 354.90876 * 15 14 13 17 17 C 1.38716 * 120.00312 * 174.90935 * 15 14 13 18 18 N 1.31508 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47341 * 120.00250 * 19 17 15 22 22 H 1.48500 * 109.47584 * 240.00588 * 19 17 15 23 23 C 1.39182 * 120.20441 * 359.75019 * 13 12 11 24 24 C 1.37589 * 120.10023 * 359.96967 * 23 13 12 25 25 C 1.47514 * 122.48717 * 270.57205 * 5 4 2 26 26 C 1.53571 * 111.02176 * 41.88555 * 25 5 4 27 27 C 1.51531 * 109.58703 * 39.98097 * 26 25 5 28 28 O 1.38015 * 109.47169 * 240.00326 * 2 1 3 29 29 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47496 * 299.99967 * 1 2 3 31 31 H 1.09001 * 109.47073 * 59.99854 * 1 2 3 32 32 H 1.09003 * 109.51082 * 68.00595 * 4 2 1 33 33 H 1.09011 * 109.69773 * 307.88052 * 4 2 1 34 34 H 1.08003 * 120.00232 * 352.90345 * 8 6 5 35 35 H 1.07997 * 120.00483 * 168.95586 * 9 8 6 36 36 H 1.08001 * 120.05718 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.94831 * 180.27869 * 12 11 10 38 38 H 0.96994 * 119.99975 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.94795 * 179.97438 * 23 13 12 40 40 H 1.08004 * 120.05558 * 180.02562 * 24 23 13 41 41 H 1.08992 * 109.16640 * 162.28185 * 25 5 4 42 42 H 1.08997 * 109.16467 * 281.48859 * 25 5 4 43 43 H 1.09005 * 109.44889 * 160.01536 * 26 25 5 44 44 H 1.09000 * 109.45606 * 279.93925 * 26 25 5 45 45 H 1.08995 * 109.58756 * 28.37685 * 27 26 25 46 46 H 1.08995 * 109.59215 * 148.67246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7327 1.2686 5 7 3.4849 -0.5702 1.3632 6 6 3.9751 0.4793 2.0521 7 8 3.2179 1.2250 2.6455 8 6 5.4169 0.7223 2.0868 9 6 5.8982 1.8491 2.6539 10 6 4.9820 2.9414 3.0107 11 6 4.0329 3.3924 2.0852 12 6 3.1736 4.4118 2.4256 13 6 3.2541 5.0018 3.6835 14 8 2.4092 6.0097 4.0126 15 6 2.6134 6.6169 5.1983 16 1 3.3681 6.2422 5.8740 17 6 1.8544 7.7231 5.5510 18 7 0.9358 8.1797 4.7281 19 14 2.1369 8.5643 7.1948 20 1 3.2192 7.8623 7.9305 21 1 2.5305 9.9778 6.9664 22 1 0.8862 8.5217 7.9942 23 6 4.1998 4.5607 4.6046 24 6 5.0593 3.5381 4.2751 25 6 4.4315 -1.5137 0.7388 26 6 3.9600 -1.9188 -0.6655 27 6 3.3881 -0.7098 -1.3777 28 8 1.9901 -0.6505 -1.1269 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8040 -1.7933 1.2002 33 1 1.5737 -0.3092 2.1552 34 1 6.0966 0.0003 1.6588 35 1 6.9571 1.9497 2.8412 36 1 3.9724 2.9379 1.1074 37 1 2.4383 4.7573 1.7141 38 1 0.4048 8.9530 4.9748 39 1 4.2589 5.0218 5.5794 40 1 5.7926 3.1962 4.9905 41 1 5.4111 -1.0417 0.6651 42 1 4.5107 -2.4053 1.3608 43 1 4.8047 -2.3088 -1.2335 44 1 3.1924 -2.6883 -0.5829 45 1 3.8654 0.1953 -1.0021 46 1 3.5658 -0.7989 -2.4494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255028632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:30 Heat of formation + Delta-G solvation = -64.473959 kcal Electronic energy + Delta-G solvation = -28682.475443 eV Core-core repulsion = 24731.389209 eV Total energy + Delta-G solvation = -3951.086234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65138 -40.73069 -39.71599 -38.19623 -36.45527 -34.85354 -34.42166 -33.88072 -31.85352 -31.36194 -29.90025 -28.15038 -27.37189 -26.67250 -24.36416 -23.52922 -22.95612 -22.30891 -21.74275 -19.95359 -19.42885 -18.87442 -18.42157 -17.72025 -17.43862 -16.87700 -16.46414 -16.39918 -16.05324 -15.85057 -15.54167 -15.32239 -14.94179 -14.70748 -14.57488 -14.49057 -14.33224 -13.93491 -13.74341 -13.60637 -13.53643 -13.35108 -13.05157 -12.93708 -12.70533 -12.53912 -12.40840 -12.35790 -12.16188 -12.10403 -11.89113 -11.52190 -11.23943 -10.93665 -10.63896 -10.58824 -10.41625 -9.76994 -9.45479 -8.60885 -8.49397 -6.16671 -0.00453 0.67937 1.04608 1.33094 1.43451 1.52439 2.08392 2.16342 2.40214 2.68225 2.84692 3.19997 3.48090 3.69316 3.72717 3.86389 3.92549 4.05987 4.09362 4.10538 4.14930 4.18079 4.30918 4.46981 4.50530 4.51752 4.55266 4.71283 4.72801 4.75691 4.77853 4.88381 4.98493 5.02650 5.07715 5.09997 5.15368 5.21755 5.22779 5.25838 5.40456 5.62995 5.67726 5.70557 5.79925 6.01311 6.22118 6.40828 6.64275 6.94637 7.33453 7.76686 8.74204 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.002861 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.024391 B = 9784.779625 C =10765.823156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.094 3.906 3 H 0.020 0.980 4 C 0.086 3.914 5 N -0.613 5.613 6 C 0.521 3.479 7 O -0.564 6.564 8 C -0.235 4.235 9 C 0.008 3.992 10 C -0.152 4.152 11 C 0.002 3.998 12 C -0.216 4.216 13 C 0.126 3.874 14 O -0.232 6.232 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.022 2.978 20 H -0.250 1.250 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.253 4.253 24 C -0.050 4.050 25 C 0.096 3.904 26 C -0.157 4.157 27 C 0.065 3.935 28 O -0.398 6.398 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 -23.808 -10.199 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.034 3.966 3 H 0.038 0.962 4 C -0.038 4.038 5 N -0.346 5.346 6 C 0.313 3.687 7 O -0.444 6.444 8 C -0.255 4.255 9 C -0.012 4.012 10 C -0.152 4.152 11 C -0.016 4.016 12 C -0.235 4.235 13 C 0.075 3.925 14 O -0.138 6.138 15 C -0.491 4.491 16 H 0.120 0.880 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.841 3.159 20 H -0.173 1.173 21 H -0.190 1.190 22 H -0.193 1.193 23 C -0.272 4.272 24 C -0.068 4.068 25 C -0.025 4.025 26 C -0.195 4.195 27 C -0.011 4.011 28 O -0.317 6.317 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.194 0.806 35 H 0.189 0.811 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.137 0.863 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.061 -23.291 -10.152 27.711 hybrid contribution -0.553 0.981 0.848 1.410 sum 10.508 -22.310 -9.303 26.357 Atomic orbital electron populations 1.21704 0.91680 1.03656 1.02647 1.21911 0.95752 0.93476 0.85446 0.96243 1.22331 0.81095 1.01826 0.98551 1.48007 1.06527 1.27156 1.52908 1.19254 0.90637 0.80371 0.78451 1.90994 1.61306 1.46921 1.45147 1.23235 0.93180 1.01274 1.07856 1.22638 0.99639 0.89697 0.89192 1.18862 1.00758 1.00537 0.95075 1.20583 0.91289 0.91605 0.98142 1.20161 1.05073 1.03241 0.95017 1.19979 0.89718 0.88713 0.94096 1.83876 1.48827 1.42800 1.38306 1.21923 1.22388 1.11688 0.93099 0.88014 1.26675 0.94932 0.96366 1.04166 1.70181 1.22300 1.24866 1.38544 0.84489 0.79086 0.77894 0.74440 1.17348 1.19046 1.19310 1.21098 1.01554 1.03926 1.00668 1.21154 0.96929 0.92794 0.95885 1.22371 0.92857 0.93105 0.94143 1.22434 1.03248 0.98506 0.95272 1.22411 0.79828 0.97679 1.01199 1.86219 1.25071 1.76749 1.43643 0.90207 0.91445 0.91640 0.88450 0.91528 0.80613 0.81094 0.86787 0.88209 0.91755 0.86214 0.83461 0.87248 0.89997 0.86270 0.90577 0.94190 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.56 71.98 0.69 -2.33 16 2 C 0.09 2.28 3.26 31.39 0.10 2.39 16 3 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 4 C 0.09 1.99 4.94 87.44 0.43 2.42 16 5 N -0.61 -12.89 2.18 -822.11 -1.79 -14.68 16 6 C 0.52 14.27 6.75 86.33 0.58 14.85 16 7 O -0.56 -21.88 11.91 -4.40 -0.05 -21.94 16 8 C -0.24 -4.63 9.12 23.61 0.22 -4.42 16 9 C 0.01 0.17 9.77 23.82 0.23 0.40 16 10 C -0.15 -5.27 4.34 -20.12 -0.09 -5.36 16 11 C 0.00 0.08 6.78 22.55 0.15 0.24 16 12 C -0.22 -10.63 9.97 22.34 0.22 -10.41 16 13 C 0.13 6.90 6.66 22.72 0.15 7.05 16 14 O -0.23 -14.96 9.74 -20.25 -0.20 -15.16 16 15 C -0.42 -25.43 9.48 67.93 0.64 -24.79 16 16 H 0.10 5.74 5.18 -2.91 -0.02 5.72 16 17 C -0.02 -1.42 5.49 84.86 0.47 -0.96 16 18 N -0.92 -58.61 13.67 21.62 0.30 -58.32 16 19 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 C -0.25 -12.03 9.14 22.34 0.20 -11.82 16 24 C -0.05 -1.87 9.78 22.55 0.22 -1.65 16 25 C 0.10 1.05 6.05 86.38 0.52 1.58 16 26 C -0.16 -1.44 5.78 30.30 0.18 -1.27 16 27 C 0.06 0.98 6.38 71.50 0.46 1.43 16 28 O -0.40 -8.55 9.47 -117.87 -1.12 -9.67 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 33 H 0.07 1.93 7.22 -2.38 -0.02 1.91 16 34 H 0.18 1.69 5.88 -2.91 -0.02 1.67 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.11 4.14 7.45 -2.91 -0.02 4.11 16 37 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.12 5.69 5.62 -2.91 -0.02 5.68 16 40 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 0.74 5.29 -2.39 -0.01 0.72 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.12 0.37 8.14 -2.38 -0.02 0.36 16 44 H 0.08 0.81 8.01 -2.39 -0.02 0.79 16 45 H 0.04 0.72 7.40 -2.39 -0.02 0.70 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -84.73 370.74 5.53 -79.19 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.99 Total: 26.83 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 5.38 Total: -32.64 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.50 Total: -73.00 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.37 Total: -46.76 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.73 5.53 -79.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255028632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.720 kcal (2) G-P(sol) polarization free energy of solvation -84.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds