Wall clock time and date at job start Tue Mar 31 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.71298 * 2 1 4 4 C 1.53717 * 109.83537 * 239.28245 * 2 1 3 5 5 H 1.09000 * 109.65656 * 172.88991 * 4 2 1 6 6 C 1.52997 * 109.48298 * 52.71897 * 4 2 1 7 7 O 1.42958 * 109.14713 * 292.85748 * 4 2 1 8 8 C 1.42960 * 114.17021 * 297.28498 * 7 4 2 9 9 C 1.53300 * 109.21809 * 62.57997 * 8 7 4 10 10 N 1.47149 * 108.38835 * 307.70255 * 9 8 7 11 11 C 1.34774 * 120.97957 * 230.51378 * 10 9 8 12 12 O 1.21719 * 120.00205 * 185.02814 * 11 10 9 13 13 C 1.46264 * 120.00053 * 5.02893 * 11 10 9 14 14 C 1.35021 * 119.99872 * 173.00143 * 13 11 10 15 15 C 1.46963 * 120.00252 * 348.54321 * 14 13 11 16 16 C 1.40029 * 120.09883 * 312.10174 * 15 14 13 17 17 C 1.37599 * 119.89232 * 179.74147 * 16 15 14 18 18 C 1.39174 * 120.10387 * 0.52468 * 17 16 15 19 19 O 1.35570 * 119.89562 * 179.69789 * 18 17 16 20 20 C 1.34789 * 116.99608 * 185.68699 * 19 18 17 21 21 H 1.07995 * 120.00051 * 354.90843 * 20 19 18 22 22 C 1.38722 * 119.99757 * 174.91019 * 20 19 18 23 23 N 1.31506 * 120.00211 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00069 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47043 * 90.00214 * 24 22 20 26 26 H 1.48502 * 109.47396 * 210.00162 * 24 22 20 27 27 H 1.48505 * 109.47521 * 330.00392 * 24 22 20 28 28 C 1.39175 * 120.20135 * 359.72866 * 18 17 16 29 29 C 1.37590 * 120.10455 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.47124 * 299.46384 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.45859 * 1 2 3 32 32 H 1.08998 * 109.47385 * 179.46972 * 1 2 3 33 33 H 1.08997 * 109.47538 * 300.36322 * 6 4 2 34 34 H 1.09007 * 109.47381 * 60.36604 * 6 4 2 35 35 H 1.09006 * 109.47426 * 180.35855 * 6 4 2 36 36 H 1.09000 * 109.51139 * 302.66235 * 8 7 4 37 37 H 1.09001 * 109.55347 * 182.52867 * 8 7 4 38 38 H 1.08999 * 109.67844 * 187.97387 * 9 8 7 39 39 H 1.09004 * 109.67873 * 67.42356 * 9 8 7 40 40 H 1.07994 * 120.00028 * 353.00417 * 13 11 10 41 41 H 1.07996 * 119.99807 * 168.81668 * 14 13 11 42 42 H 1.07993 * 120.05267 * 359.96593 * 16 15 14 43 43 H 1.08001 * 119.94616 * 180.24947 * 17 16 15 44 44 H 0.96996 * 120.00477 * 179.97438 * 23 22 20 45 45 H 1.08004 * 119.94777 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05369 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0515 -0.7386 -1.2431 5 1 3.1341 -0.6290 -1.3074 6 6 1.4028 -0.1486 -2.4968 7 8 1.7172 -2.1247 -1.1396 8 6 2.3217 -2.7913 -0.0289 9 6 1.8190 -2.1587 1.2739 10 7 2.0256 -0.7040 1.1933 11 6 2.6455 -0.0353 2.1858 12 8 2.7260 1.1785 2.1443 13 6 3.2215 -0.7682 3.3129 14 6 3.9635 -0.1164 4.2336 15 6 4.4041 1.2625 3.9800 16 6 4.9904 1.5980 2.7534 17 6 5.3966 2.8915 2.5185 18 6 5.2355 3.8632 3.5017 19 8 5.6427 5.1350 3.2680 20 6 5.5680 6.0005 4.2986 21 1 5.1206 5.6918 5.2317 22 6 6.0659 7.2879 4.1605 23 7 5.9935 8.1323 5.1661 24 14 6.8405 7.8218 2.5467 25 1 5.7955 8.3978 1.6628 26 1 7.8831 8.8452 2.8126 27 1 7.4586 6.6467 1.8816 28 6 4.6581 3.5332 4.7243 29 6 4.2443 2.2435 4.9663 30 1 -0.3633 0.5055 0.8948 31 1 -0.3634 0.5222 -0.8851 32 1 -0.3634 -1.0276 -0.0095 33 1 0.3203 -0.2569 -2.4311 34 1 1.6582 0.9082 -2.5751 35 1 1.7680 -0.6767 -3.3778 36 1 3.4053 -2.6892 -0.0887 37 1 2.0539 -3.8478 -0.0476 38 1 2.3781 -2.5628 2.1178 39 1 0.7576 -2.3723 1.4000 40 1 3.0534 -1.8307 3.4087 41 1 4.2368 -0.6099 5.1545 42 1 5.1203 0.8435 1.9917 43 1 5.8452 3.1521 1.5713 44 1 6.3419 9.0324 5.0698 45 1 4.5354 4.2904 5.4845 46 1 3.7967 1.9882 5.9155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255109935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:35 Heat of formation + Delta-G solvation = -42.187049 kcal Electronic energy + Delta-G solvation = -28504.497387 eV Core-core repulsion = 24554.377586 eV Total energy + Delta-G solvation = -3950.119801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67375 -39.24448 -38.47934 -36.62739 -34.92664 -34.16528 -33.02299 -32.27957 -30.23646 -29.40160 -29.00603 -28.11885 -25.57519 -24.93397 -23.67017 -22.99557 -21.94368 -21.03926 -19.70995 -18.52183 -17.80469 -17.68051 -17.15521 -16.77607 -16.19301 -15.69248 -15.34337 -14.96796 -14.74219 -14.47405 -13.98557 -13.89607 -13.80466 -13.67566 -13.43628 -13.07044 -12.98233 -12.85802 -12.61823 -12.45295 -12.27728 -12.17086 -12.07290 -11.95462 -11.78849 -11.42743 -11.23529 -10.96458 -10.78071 -10.72254 -10.66613 -10.25191 -10.14756 -9.53131 -9.42938 -9.26144 -8.78438 -8.61816 -8.06506 -7.02724 -6.42600 -4.06783 1.16081 2.29988 2.53298 2.83728 3.23294 3.26063 3.40739 3.40859 3.48156 4.23779 4.34026 4.53425 4.59282 4.64418 4.71027 4.78700 4.88508 4.89387 4.97718 5.10543 5.15028 5.20083 5.23814 5.26433 5.42954 5.47335 5.50975 5.55035 5.63878 5.64938 5.72567 5.73321 5.91349 6.04718 6.14771 6.18836 6.29731 6.42766 6.49824 6.64171 6.85462 6.89701 7.14895 7.27433 7.35926 7.42483 7.65471 7.83388 8.05376 8.38444 8.92558 9.56844 10.64806 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002885 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.919047 B = 9702.134134 C =10747.318637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 H 0.107 0.893 4 C 0.080 3.920 5 H 0.062 0.938 6 C -0.147 4.147 7 O -0.377 6.377 8 C 0.048 3.952 9 C 0.073 3.927 10 N -0.618 5.618 11 C 0.545 3.455 12 O -0.508 6.508 13 C -0.263 4.263 14 C 0.026 3.974 15 C -0.174 4.174 16 C -0.003 4.003 17 C -0.198 4.198 18 C 0.175 3.825 19 O -0.213 6.213 20 C -0.388 4.388 21 H 0.108 0.892 22 C 0.064 3.936 23 N -0.878 5.878 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.233 4.233 29 C -0.045 4.045 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.114 0.886 44 H 0.280 0.720 45 H 0.132 0.868 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 -23.135 -9.519 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 H 0.125 0.875 4 C 0.022 3.978 5 H 0.080 0.920 6 C -0.204 4.204 7 O -0.296 6.296 8 C -0.030 4.030 9 C -0.051 4.051 10 N -0.354 5.354 11 C 0.337 3.663 12 O -0.384 6.384 13 C -0.284 4.284 14 C 0.007 3.993 15 C -0.175 4.175 16 C -0.021 4.021 17 C -0.217 4.217 18 C 0.122 3.878 19 O -0.117 6.117 20 C -0.463 4.463 21 H 0.125 0.875 22 C -0.140 4.140 23 N -0.515 5.515 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.252 4.252 29 C -0.064 4.064 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.150 0.850 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.094 -22.180 -9.778 25.556 hybrid contribution 0.291 0.279 -0.179 0.442 sum -7.802 -21.901 -9.958 25.292 Atomic orbital electron populations 1.22058 0.94572 1.02388 1.02406 1.21866 0.95022 0.98180 0.84193 0.87455 1.22568 0.98796 0.81578 0.94894 0.91953 1.21835 1.01906 1.00853 0.95800 1.87932 1.72051 1.22125 1.47448 1.22957 0.97454 0.96896 0.85647 1.22420 1.02128 0.81193 0.99321 1.48208 1.59749 1.07511 1.19963 1.18496 0.78160 0.87622 0.82044 1.90988 1.57541 1.13109 1.76738 1.22733 1.06999 0.99663 0.98997 1.22389 0.88570 0.93045 0.95302 1.18349 1.09937 0.92909 0.96268 1.20409 0.93630 0.94556 0.93543 1.19992 1.10225 0.92033 0.99480 1.19258 0.91370 0.84270 0.92902 1.83506 1.73597 1.15893 1.38754 1.20829 1.40436 0.92056 0.93022 0.87481 1.24487 0.96290 0.94553 0.98653 1.69621 1.44661 1.06417 1.30802 0.86181 0.79309 0.78896 0.82547 1.19822 1.20765 1.18299 1.21079 1.07818 0.97335 0.98962 1.20770 0.96348 0.92434 0.96802 0.92305 0.91227 0.92070 0.91162 0.90599 0.91615 0.92652 0.87866 0.88505 0.90922 0.85817 0.85781 0.88058 0.86832 0.90991 0.84995 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.64 37.15 0.32 -1.24 16 2 C 0.11 1.25 2.85 -67.21 -0.19 1.06 16 3 H 0.11 1.46 7.12 -51.93 -0.37 1.09 16 4 C 0.08 0.78 3.11 -26.36 -0.08 0.70 16 5 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 6 C -0.15 -1.16 9.03 37.16 0.34 -0.83 16 7 O -0.38 -3.65 10.01 -35.23 -0.35 -4.00 16 8 C 0.05 0.36 6.99 37.31 0.26 0.62 16 9 C 0.07 0.58 6.15 -3.53 -0.02 0.56 16 10 N -0.62 -7.13 2.71 -166.18 -0.45 -7.58 16 11 C 0.55 7.89 6.82 -13.04 -0.09 7.81 16 12 O -0.51 -9.61 12.00 5.17 0.06 -9.55 16 13 C -0.26 -3.17 9.25 -37.50 -0.35 -3.51 16 14 C 0.03 0.35 9.77 -37.19 -0.36 -0.01 16 15 C -0.17 -3.08 4.34 -105.02 -0.46 -3.54 16 16 C 0.00 -0.05 6.78 -39.14 -0.27 -0.32 16 17 C -0.20 -4.26 9.97 -39.47 -0.39 -4.65 16 18 C 0.17 4.25 6.66 -38.89 -0.26 4.00 16 19 O -0.21 -5.82 8.57 0.72 0.01 -5.81 16 20 C -0.39 -11.16 9.94 30.91 0.31 -10.85 16 21 H 0.11 3.14 5.41 -52.49 -0.28 2.85 16 22 C 0.06 1.81 5.49 -17.51 -0.10 1.72 16 23 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 24 Si 0.91 22.00 28.62 -169.99 -4.86 17.13 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 28 C -0.23 -5.27 9.14 -39.47 -0.36 -5.63 16 29 C -0.05 -0.86 9.78 -39.15 -0.38 -1.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.60 6.45 -51.93 -0.33 0.26 16 32 H 0.06 0.58 7.21 -51.93 -0.37 0.20 16 33 H 0.07 0.53 6.38 -51.93 -0.33 0.20 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.60 5.40 -51.93 -0.28 0.32 16 39 H 0.07 0.54 7.65 -51.93 -0.40 0.15 16 40 H 0.12 1.03 5.92 -52.49 -0.31 0.72 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.10 1.72 7.45 -52.49 -0.39 1.33 16 43 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 44 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.13 3.10 5.62 -52.48 -0.29 2.81 16 46 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -33.07 367.88 -7.67 -40.74 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.31 Total: 3.71 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.08 Total: -15.38 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.32 Total: -32.39 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.28 Total: -19.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.07 -7.67 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255109935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.444 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds