Wall clock time and date at job start Tue Mar 31 2020 17:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.71298 * 2 1 4 4 C 1.53717 * 109.83537 * 239.28245 * 2 1 3 5 5 H 1.09000 * 109.65656 * 172.88991 * 4 2 1 6 6 C 1.52997 * 109.48298 * 52.71897 * 4 2 1 7 7 O 1.42958 * 109.14713 * 292.85748 * 4 2 1 8 8 C 1.42960 * 114.17021 * 297.28498 * 7 4 2 9 9 C 1.53300 * 109.21809 * 62.57997 * 8 7 4 10 10 N 1.47149 * 108.38835 * 307.70255 * 9 8 7 11 11 C 1.34774 * 120.97957 * 230.51378 * 10 9 8 12 12 O 1.21719 * 120.00205 * 185.02814 * 11 10 9 13 13 C 1.46264 * 120.00053 * 5.02893 * 11 10 9 14 14 C 1.35021 * 119.99872 * 173.00143 * 13 11 10 15 15 C 1.46963 * 120.00252 * 348.54321 * 14 13 11 16 16 C 1.40029 * 120.09883 * 312.10174 * 15 14 13 17 17 C 1.37599 * 119.89232 * 179.74147 * 16 15 14 18 18 C 1.39174 * 120.10387 * 0.52468 * 17 16 15 19 19 O 1.35570 * 119.89562 * 179.69789 * 18 17 16 20 20 C 1.34789 * 116.99608 * 185.68699 * 19 18 17 21 21 H 1.07995 * 120.00051 * 354.90843 * 20 19 18 22 22 C 1.38722 * 119.99757 * 174.91019 * 20 19 18 23 23 N 1.31506 * 120.00211 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00069 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47043 * 90.00214 * 24 22 20 26 26 H 1.48502 * 109.47396 * 210.00162 * 24 22 20 27 27 H 1.48505 * 109.47521 * 330.00392 * 24 22 20 28 28 C 1.39175 * 120.20135 * 359.72866 * 18 17 16 29 29 C 1.37590 * 120.10455 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.47124 * 299.46384 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.45859 * 1 2 3 32 32 H 1.08998 * 109.47385 * 179.46972 * 1 2 3 33 33 H 1.08997 * 109.47538 * 300.36322 * 6 4 2 34 34 H 1.09007 * 109.47381 * 60.36604 * 6 4 2 35 35 H 1.09006 * 109.47426 * 180.35855 * 6 4 2 36 36 H 1.09000 * 109.51139 * 302.66235 * 8 7 4 37 37 H 1.09001 * 109.55347 * 182.52867 * 8 7 4 38 38 H 1.08999 * 109.67844 * 187.97387 * 9 8 7 39 39 H 1.09004 * 109.67873 * 67.42356 * 9 8 7 40 40 H 1.07994 * 120.00028 * 353.00417 * 13 11 10 41 41 H 1.07996 * 119.99807 * 168.81668 * 14 13 11 42 42 H 1.07993 * 120.05267 * 359.96593 * 16 15 14 43 43 H 1.08001 * 119.94616 * 180.24947 * 17 16 15 44 44 H 0.96996 * 120.00477 * 179.97438 * 23 22 20 45 45 H 1.08004 * 119.94777 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05369 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0515 -0.7386 -1.2431 5 1 3.1341 -0.6290 -1.3074 6 6 1.4028 -0.1486 -2.4968 7 8 1.7172 -2.1247 -1.1396 8 6 2.3217 -2.7913 -0.0289 9 6 1.8190 -2.1587 1.2739 10 7 2.0256 -0.7040 1.1933 11 6 2.6455 -0.0353 2.1858 12 8 2.7260 1.1785 2.1443 13 6 3.2215 -0.7682 3.3129 14 6 3.9635 -0.1164 4.2336 15 6 4.4041 1.2625 3.9800 16 6 4.9904 1.5980 2.7534 17 6 5.3966 2.8915 2.5185 18 6 5.2355 3.8632 3.5017 19 8 5.6427 5.1350 3.2680 20 6 5.5680 6.0005 4.2986 21 1 5.1206 5.6918 5.2317 22 6 6.0659 7.2879 4.1605 23 7 5.9935 8.1323 5.1661 24 14 6.8405 7.8218 2.5467 25 1 5.7955 8.3978 1.6628 26 1 7.8831 8.8452 2.8126 27 1 7.4586 6.6467 1.8816 28 6 4.6581 3.5332 4.7243 29 6 4.2443 2.2435 4.9663 30 1 -0.3633 0.5055 0.8948 31 1 -0.3634 0.5222 -0.8851 32 1 -0.3634 -1.0276 -0.0095 33 1 0.3203 -0.2569 -2.4311 34 1 1.6582 0.9082 -2.5751 35 1 1.7680 -0.6767 -3.3778 36 1 3.4053 -2.6892 -0.0887 37 1 2.0539 -3.8478 -0.0476 38 1 2.3781 -2.5628 2.1178 39 1 0.7576 -2.3723 1.4000 40 1 3.0534 -1.8307 3.4087 41 1 4.2368 -0.6099 5.1545 42 1 5.1203 0.8435 1.9917 43 1 5.8452 3.1521 1.5713 44 1 6.3419 9.0324 5.0698 45 1 4.5354 4.2904 5.4845 46 1 3.7967 1.9882 5.9155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255109935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:34 Heat of formation + Delta-G solvation = -63.245956 kcal Electronic energy + Delta-G solvation = -28505.410570 eV Core-core repulsion = 24554.377586 eV Total energy + Delta-G solvation = -3951.032984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62740 -40.84835 -39.67573 -38.21172 -35.88884 -35.01869 -34.58153 -33.96956 -31.88909 -30.43153 -29.71354 -29.44753 -27.38251 -26.01348 -24.37579 -24.16895 -23.61569 -22.41867 -20.71825 -19.88393 -19.42597 -19.05057 -18.60034 -17.63548 -17.01976 -16.71770 -16.64654 -16.21887 -15.99023 -15.78130 -15.69578 -15.47803 -15.15673 -14.81807 -14.50600 -14.36698 -14.26092 -14.08179 -13.97585 -13.76490 -13.62507 -13.18092 -13.13442 -12.86125 -12.71484 -12.61468 -12.56941 -12.52721 -12.22923 -11.97253 -11.95233 -11.48790 -11.34241 -11.12191 -10.96475 -10.60880 -10.46632 -9.80119 -9.41437 -8.67795 -8.53236 -6.24511 -0.04006 0.64416 1.00417 1.27692 1.33659 1.48507 1.94844 2.25456 2.38548 2.75854 2.76736 3.07128 3.15103 3.54766 3.73151 3.88007 3.90639 4.04457 4.06624 4.09400 4.11627 4.23046 4.35100 4.35806 4.41102 4.50045 4.59537 4.68054 4.73009 4.74348 4.85834 4.88592 4.91580 4.93073 4.96745 5.13463 5.15865 5.19031 5.29668 5.33865 5.41820 5.54343 5.64773 5.74647 5.78571 5.88307 6.17243 6.23428 6.45959 6.80764 7.29973 7.56290 8.58382 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002885 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.919047 B = 9702.134134 C =10747.318637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.106 3.894 3 H 0.076 0.924 4 C 0.087 3.913 5 H 0.053 0.947 6 C -0.145 4.145 7 O -0.385 6.385 8 C 0.044 3.956 9 C 0.067 3.933 10 N -0.613 5.613 11 C 0.530 3.470 12 O -0.565 6.565 13 C -0.229 4.229 14 C 0.005 3.995 15 C -0.143 4.143 16 C -0.002 4.002 17 C -0.204 4.204 18 C 0.131 3.869 19 O -0.244 6.244 20 C -0.402 4.402 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.921 5.921 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.262 1.262 27 H -0.265 1.265 28 C -0.247 4.247 29 C -0.055 4.055 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.286 0.714 45 H 0.109 0.891 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 -28.120 -10.650 31.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 H 0.094 0.906 4 C 0.028 3.972 5 H 0.071 0.929 6 C -0.203 4.203 7 O -0.304 6.304 8 C -0.033 4.033 9 C -0.055 4.055 10 N -0.347 5.347 11 C 0.322 3.678 12 O -0.445 6.445 13 C -0.250 4.250 14 C -0.014 4.014 15 C -0.144 4.144 16 C -0.020 4.020 17 C -0.223 4.223 18 C 0.082 3.918 19 O -0.152 6.152 20 C -0.478 4.478 21 H 0.099 0.901 22 C -0.187 4.187 23 N -0.562 5.562 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.187 1.187 27 H -0.189 1.189 28 C -0.267 4.267 29 C -0.073 4.073 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.000 -27.263 -10.926 30.719 hybrid contribution 0.320 1.290 0.111 1.333 sum -8.680 -25.974 -10.815 29.444 Atomic orbital electron populations 1.21984 0.93509 1.02924 1.02139 1.21890 0.95810 0.97007 0.85120 0.90611 1.22465 0.98246 0.81875 0.94598 0.92912 1.21842 1.02159 1.00931 0.95320 1.87934 1.72345 1.21652 1.48510 1.23193 0.97431 0.98182 0.84514 1.22757 1.03417 0.78540 1.00751 1.48321 1.58104 1.09236 1.19040 1.19122 0.78236 0.87273 0.83123 1.90986 1.59746 1.15612 1.78178 1.23154 1.04168 1.01602 0.96028 1.22623 0.90454 0.90498 0.97814 1.18915 1.05775 0.95143 0.94532 1.20703 0.92839 0.93777 0.94722 1.20239 1.10224 0.92757 0.99094 1.19726 0.93342 0.84116 0.94632 1.83450 1.76451 1.17042 1.38216 1.20760 1.40964 0.93079 0.92973 0.90067 1.25277 0.96895 0.94391 1.02099 1.69697 1.46696 1.07074 1.32686 0.85240 0.78842 0.78439 0.78310 1.19189 1.18683 1.18922 1.21121 1.08694 0.98708 0.98147 1.21128 0.96188 0.91107 0.98864 0.94109 0.90023 0.90984 0.90580 0.90556 0.90829 0.92663 0.84819 0.85874 0.89846 0.80696 0.81184 0.85797 0.86454 0.90441 0.87296 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.64 71.98 0.62 -2.09 16 2 C 0.11 2.25 2.85 45.11 0.13 2.38 16 3 H 0.08 2.11 7.12 -2.39 -0.02 2.09 16 4 C 0.09 1.53 3.11 30.83 0.10 1.62 16 5 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 6 C -0.15 -2.07 9.03 71.98 0.65 -1.42 16 7 O -0.39 -6.19 10.01 -148.98 -1.49 -7.69 16 8 C 0.04 0.45 6.99 72.08 0.50 0.95 16 9 C 0.07 0.73 6.15 86.36 0.53 1.26 16 10 N -0.61 -12.30 2.71 -797.89 -2.16 -14.47 16 11 C 0.53 13.79 6.82 86.33 0.59 14.38 16 12 O -0.57 -20.93 12.00 -4.41 -0.05 -20.98 16 13 C -0.23 -4.24 9.25 23.62 0.22 -4.02 16 14 C 0.01 0.11 9.77 23.82 0.23 0.35 16 15 C -0.14 -4.77 4.34 -20.12 -0.09 -4.85 16 16 C 0.00 -0.08 6.78 22.55 0.15 0.07 16 17 C -0.20 -9.04 9.97 22.34 0.22 -8.81 16 18 C 0.13 6.77 6.66 22.72 0.15 6.92 16 19 O -0.24 -14.27 8.57 -20.35 -0.17 -14.44 16 20 C -0.40 -24.88 9.94 67.94 0.68 -24.21 16 21 H 0.08 5.25 5.41 -2.91 -0.02 5.24 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.92 -56.55 13.96 21.62 0.30 -56.25 16 24 Si 0.97 47.33 28.62 68.60 1.96 49.29 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.26 -13.00 7.11 99.48 0.71 -12.29 16 28 C -0.25 -11.86 9.14 22.34 0.20 -11.65 16 29 C -0.05 -2.07 9.78 22.55 0.22 -1.85 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.28 6.45 -2.39 -0.02 1.27 16 32 H 0.07 1.16 7.21 -2.39 -0.02 1.15 16 33 H 0.08 0.99 6.38 -2.39 -0.02 0.98 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.13 0.60 8.14 -2.39 -0.02 0.59 16 38 H 0.12 0.67 5.40 -2.39 -0.01 0.66 16 39 H 0.08 0.82 7.65 -2.39 -0.02 0.80 16 40 H 0.18 1.49 5.92 -2.91 -0.02 1.48 16 41 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.12 3.95 7.45 -2.91 -0.02 3.93 16 43 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 44 H 0.29 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.11 5.63 5.62 -2.91 -0.02 5.62 16 46 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -79.62 367.88 4.96 -74.66 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.00 Total: 19.67 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 5.58 Total: -29.79 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.86 Total: -70.72 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.72 Total: -43.11 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.96 Total: 49.29 kcal Total: -79.62 4.96 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255109935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.413 kcal (2) G-P(sol) polarization free energy of solvation -79.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds