Wall clock time and date at job start Tue Mar 31 2020 17:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.51228 * 2 1 4 4 O 1.42958 * 109.51240 * 239.89313 * 2 1 3 5 5 C 1.42964 * 114.16391 * 177.49636 * 4 2 1 6 6 C 1.53285 * 109.22407 * 62.58271 * 5 4 2 7 7 N 1.47148 * 108.38718 * 307.69734 * 6 5 4 8 8 C 1.34777 * 120.98645 * 230.51722 * 7 6 5 9 9 O 1.21717 * 120.00411 * 185.43919 * 8 7 6 10 10 C 1.46254 * 119.99646 * 5.15228 * 8 7 6 11 11 C 1.35024 * 119.99977 * 173.02627 * 10 8 7 12 12 C 1.46964 * 119.99951 * 348.81584 * 11 10 8 13 13 C 1.40027 * 120.09585 * 313.66343 * 12 11 10 14 14 C 1.37607 * 119.89267 * 179.72007 * 13 12 11 15 15 C 1.39179 * 120.09898 * 0.55545 * 14 13 12 16 16 O 1.35574 * 119.89586 * 179.69896 * 15 14 13 17 17 C 1.34775 * 116.99732 * 185.80385 * 16 15 14 18 18 H 1.08003 * 120.00416 * 5.38901 * 17 16 15 19 19 C 1.38717 * 119.99953 * 185.38383 * 17 16 15 20 20 N 1.31514 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47140 * 60.00289 * 21 19 17 23 23 H 1.48504 * 109.46925 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47031 * 300.00195 * 21 19 17 25 25 C 1.39174 * 120.20259 * 359.71871 * 15 14 13 26 26 C 1.37597 * 120.10414 * 0.02562 * 25 15 14 27 27 C 1.47156 * 118.03460 * 50.78079 * 7 6 5 28 28 H 1.09002 * 109.67673 * 68.94066 * 27 7 6 29 29 C 1.52998 * 109.68457 * 189.49150 * 27 7 6 30 30 H 1.09003 * 109.47167 * 180.10010 * 1 2 3 31 31 H 1.08999 * 109.47252 * 300.10508 * 1 2 3 32 32 H 1.09001 * 109.47067 * 60.10523 * 1 2 3 33 33 H 1.09004 * 109.51098 * 302.65298 * 5 4 2 34 34 H 1.09002 * 109.55301 * 182.53480 * 5 4 2 35 35 H 1.09005 * 109.68543 * 187.97332 * 6 5 4 36 36 H 1.09008 * 109.71683 * 67.43921 * 6 5 4 37 37 H 1.08005 * 119.99973 * 353.02212 * 10 8 7 38 38 H 1.07997 * 120.00285 * 168.81910 * 11 10 8 39 39 H 1.08000 * 120.05477 * 359.97438 * 13 12 11 40 40 H 1.07994 * 119.94700 * 180.29670 * 14 13 12 41 41 H 0.96997 * 119.99669 * 180.02562 * 20 19 17 42 42 H 1.07997 * 119.94549 * 180.02562 * 25 15 14 43 43 H 1.08001 * 120.04751 * 179.97438 * 26 25 15 44 44 H 1.09004 * 109.46879 * 52.34158 * 29 27 7 45 45 H 1.08993 * 109.47648 * 172.34074 * 29 27 7 46 46 H 1.09003 * 109.47586 * 292.35100 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6759 -1.1657 5 6 3.4313 -0.6850 -1.2949 6 6 4.0406 -1.4457 -0.1119 7 7 3.5012 -0.8767 1.1333 8 6 4.3192 -0.5050 2.1378 9 8 3.8510 -0.1293 3.1967 10 6 5.7696 -0.5591 1.9577 11 6 6.5871 -0.0562 2.9075 12 6 6.0329 0.7593 3.9973 13 6 5.1169 1.7799 3.7147 14 6 4.5962 2.5372 4.7389 15 6 4.9876 2.2975 6.0528 16 8 4.4767 3.0501 7.0581 17 6 4.9839 2.8501 8.2907 18 1 5.8203 2.1809 8.4285 19 6 4.4316 3.5038 9.3824 20 7 3.4128 4.3183 9.2147 21 14 5.1349 3.2272 11.0907 22 1 6.5618 3.6378 11.1110 23 1 4.3727 4.0351 12.0766 24 1 5.0287 1.7884 11.4427 25 6 5.9022 1.2878 6.3378 26 6 6.4241 0.5221 5.3207 27 6 2.0416 -0.7309 1.2517 28 1 1.5788 -1.7154 1.3202 29 6 1.7049 0.0857 2.5010 30 1 -0.3634 -1.0277 0.0018 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8909 33 1 3.8030 0.3397 -1.2993 34 1 3.7099 -1.1772 -2.2267 35 1 5.1252 -1.3376 -0.1252 36 1 3.7762 -2.5012 -0.1779 37 1 6.1868 -1.0013 1.0651 38 1 7.6481 -0.2533 2.8663 39 1 4.8163 1.9698 2.6949 40 1 3.8861 3.3214 4.5224 41 1 3.0268 4.7757 9.9781 42 1 6.2027 1.1051 7.3589 43 1 7.1340 -0.2608 5.5428 44 1 2.2698 1.0179 2.4888 45 1 0.6379 0.3076 2.5134 46 1 1.9675 -0.4865 3.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255109936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:39 Heat of formation + Delta-G solvation = -31.942538 kcal Electronic energy + Delta-G solvation = -28729.893628 eV Core-core repulsion = 24780.218062 eV Total energy + Delta-G solvation = -3949.675566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69879 -39.08250 -38.35848 -36.51223 -34.73907 -34.33446 -32.93882 -32.11553 -30.13886 -29.26810 -28.94500 -27.78502 -25.50271 -24.82470 -23.17484 -22.94890 -21.80050 -21.24559 -20.31186 -18.42268 -17.90097 -17.38522 -16.76928 -16.67299 -16.06174 -15.70114 -15.16456 -14.97851 -14.56438 -14.54604 -14.33698 -13.81524 -13.59504 -13.31067 -13.22212 -13.13772 -12.99246 -12.76124 -12.59831 -12.32499 -12.07476 -11.92778 -11.87696 -11.69540 -11.63994 -11.28762 -11.15911 -10.99569 -10.86593 -10.65365 -10.61293 -10.40538 -10.26725 -9.48054 -9.18114 -8.89002 -8.67696 -8.50844 -7.92893 -6.88177 -6.46419 -4.02281 1.23351 2.40170 2.65259 2.90220 3.13164 3.15276 3.16983 3.45739 3.56374 3.96625 4.40742 4.59153 4.67328 4.70744 4.80989 4.83962 4.95185 5.04055 5.12529 5.22310 5.27199 5.31134 5.31994 5.40422 5.48300 5.54116 5.59844 5.71439 5.72906 5.80118 5.82844 5.94913 6.20887 6.21552 6.26161 6.38639 6.46430 6.59175 6.73755 6.77206 6.90471 7.01911 7.10906 7.33520 7.42323 7.49210 7.51894 7.90678 7.99873 8.49367 8.99168 9.71145 10.71389 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.002826 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.537546 B = 9906.269897 C =10924.576152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.063 0.937 4 O -0.380 6.380 5 C 0.048 3.952 6 C 0.074 3.926 7 N -0.621 5.621 8 C 0.544 3.456 9 O -0.499 6.499 10 C -0.270 4.270 11 C 0.028 3.972 12 C -0.185 4.185 13 C 0.005 3.995 14 C -0.200 4.200 15 C 0.170 3.830 16 O -0.172 6.172 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.247 4.247 26 C -0.042 4.042 27 C 0.121 3.879 28 H 0.073 0.927 29 C -0.140 4.140 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.271 0.729 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -10.761 -19.615 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 H 0.081 0.919 4 O -0.299 6.299 5 C -0.030 4.030 6 C -0.050 4.050 7 N -0.358 5.358 8 C 0.336 3.664 9 O -0.375 6.375 10 C -0.291 4.291 11 C 0.009 3.991 12 C -0.186 4.186 13 C -0.013 4.013 14 C -0.219 4.219 15 C 0.115 3.885 16 O -0.075 6.075 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.267 4.267 26 C -0.061 4.061 27 C 0.017 3.983 28 H 0.091 0.909 29 C -0.197 4.197 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.649 -10.290 -18.973 21.593 hybrid contribution 0.624 -0.324 0.788 1.056 sum 1.273 -10.613 -18.185 21.094 Atomic orbital electron populations 1.21798 0.92299 1.03133 1.02979 1.22675 0.95562 0.95342 0.84618 0.91854 1.87935 1.20709 1.77642 1.43629 1.22955 0.81577 1.00255 0.98181 1.22428 1.00089 0.98078 0.84384 1.48207 1.06276 1.64907 1.16408 1.18452 0.87321 0.77336 0.83251 1.91025 1.76018 1.45155 1.25271 1.22750 0.92752 1.11235 1.02337 1.22353 0.98049 0.88132 0.90590 1.18270 1.05852 1.01826 0.92618 1.20401 0.91731 0.92440 0.96761 1.19981 1.06655 1.05118 0.90159 1.19525 0.90958 0.88938 0.89053 1.83922 1.55470 1.52622 1.15456 1.21331 1.15240 1.28968 0.81116 0.88999 1.25321 0.95932 0.95816 0.99445 1.70014 1.21615 1.25877 1.31890 0.85778 0.78877 0.78792 0.79989 1.19438 1.20242 1.19453 1.20955 1.05065 1.00959 0.99675 1.20719 0.96961 0.96754 0.91644 1.21988 0.80094 0.99774 0.96400 0.90945 1.22205 0.99505 1.01285 0.96688 0.91694 0.90276 0.91621 0.92639 0.87874 0.88451 0.90999 0.86092 0.86106 0.88293 0.86898 0.91889 0.85686 0.87674 0.91410 0.93445 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.38 37.16 0.35 -0.93 16 2 C 0.08 0.81 2.87 -26.36 -0.08 0.74 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 O -0.38 -4.05 10.38 -35.23 -0.37 -4.41 16 5 C 0.05 0.39 6.98 37.31 0.26 0.65 16 6 C 0.07 0.63 6.55 -3.54 -0.02 0.61 16 7 N -0.62 -7.56 3.01 -166.19 -0.50 -8.06 16 8 C 0.54 8.02 6.54 -13.04 -0.09 7.94 16 9 O -0.50 -9.20 8.14 5.17 0.04 -9.16 16 10 C -0.27 -3.37 9.24 -37.51 -0.35 -3.72 16 11 C 0.03 0.39 9.78 -37.19 -0.36 0.03 16 12 C -0.18 -3.34 4.41 -105.03 -0.46 -3.80 16 13 C 0.01 0.10 6.71 -39.14 -0.26 -0.16 16 14 C -0.20 -4.49 9.97 -39.46 -0.39 -4.89 16 15 C 0.17 4.28 6.66 -38.88 -0.26 4.02 16 16 O -0.17 -5.04 9.74 0.75 0.01 -5.03 16 17 C -0.39 -11.07 9.44 30.91 0.29 -10.78 16 18 H 0.09 2.41 5.28 -52.48 -0.28 2.13 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 21 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.25 -5.59 9.11 -39.47 -0.36 -5.95 16 26 C -0.04 -0.81 9.78 -39.15 -0.38 -1.20 16 27 C 0.12 1.46 3.14 -67.21 -0.21 1.25 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 C -0.14 -1.97 7.57 37.16 0.28 -1.69 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.66 6.60 -51.93 -0.34 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.66 5.40 -51.93 -0.28 0.38 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.12 1.08 5.92 -52.48 -0.31 0.77 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.10 1.76 7.29 -52.49 -0.38 1.37 16 40 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 2.81 5.69 -52.49 -0.30 2.51 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.07 1.09 7.05 -51.93 -0.37 0.72 16 45 H 0.05 0.57 6.47 -51.93 -0.34 0.23 16 46 H 0.09 1.46 6.53 -51.93 -0.34 1.12 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -33.16 365.16 -8.02 -41.18 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.30 Total: 5.89 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.14 Total: -16.89 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.26 Total: -32.73 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.32 Total: -18.60 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.16 -8.02 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255109936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.239 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds