Wall clock time and date at job start Tue Mar 31 2020 17:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.51228 * 2 1 4 4 O 1.42958 * 109.51240 * 239.89313 * 2 1 3 5 5 C 1.42964 * 114.16391 * 177.49636 * 4 2 1 6 6 C 1.53285 * 109.22407 * 62.58271 * 5 4 2 7 7 N 1.47148 * 108.38718 * 307.69734 * 6 5 4 8 8 C 1.34777 * 120.98645 * 230.51722 * 7 6 5 9 9 O 1.21717 * 120.00411 * 185.43919 * 8 7 6 10 10 C 1.46254 * 119.99646 * 5.15228 * 8 7 6 11 11 C 1.35024 * 119.99977 * 173.02627 * 10 8 7 12 12 C 1.46964 * 119.99951 * 348.81584 * 11 10 8 13 13 C 1.40027 * 120.09585 * 313.66343 * 12 11 10 14 14 C 1.37607 * 119.89267 * 179.72007 * 13 12 11 15 15 C 1.39179 * 120.09898 * 0.55545 * 14 13 12 16 16 O 1.35574 * 119.89586 * 179.69896 * 15 14 13 17 17 C 1.34775 * 116.99732 * 185.80385 * 16 15 14 18 18 H 1.08003 * 120.00416 * 5.38901 * 17 16 15 19 19 C 1.38717 * 119.99953 * 185.38383 * 17 16 15 20 20 N 1.31514 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00252 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47140 * 60.00289 * 21 19 17 23 23 H 1.48504 * 109.46925 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47031 * 300.00195 * 21 19 17 25 25 C 1.39174 * 120.20259 * 359.71871 * 15 14 13 26 26 C 1.37597 * 120.10414 * 0.02562 * 25 15 14 27 27 C 1.47156 * 118.03460 * 50.78079 * 7 6 5 28 28 H 1.09002 * 109.67673 * 68.94066 * 27 7 6 29 29 C 1.52998 * 109.68457 * 189.49150 * 27 7 6 30 30 H 1.09003 * 109.47167 * 180.10010 * 1 2 3 31 31 H 1.08999 * 109.47252 * 300.10508 * 1 2 3 32 32 H 1.09001 * 109.47067 * 60.10523 * 1 2 3 33 33 H 1.09004 * 109.51098 * 302.65298 * 5 4 2 34 34 H 1.09002 * 109.55301 * 182.53480 * 5 4 2 35 35 H 1.09005 * 109.68543 * 187.97332 * 6 5 4 36 36 H 1.09008 * 109.71683 * 67.43921 * 6 5 4 37 37 H 1.08005 * 119.99973 * 353.02212 * 10 8 7 38 38 H 1.07997 * 120.00285 * 168.81910 * 11 10 8 39 39 H 1.08000 * 120.05477 * 359.97438 * 13 12 11 40 40 H 1.07994 * 119.94700 * 180.29670 * 14 13 12 41 41 H 0.96997 * 119.99669 * 180.02562 * 20 19 17 42 42 H 1.07997 * 119.94549 * 180.02562 * 25 15 14 43 43 H 1.08001 * 120.04751 * 179.97438 * 26 25 15 44 44 H 1.09004 * 109.46879 * 52.34158 * 29 27 7 45 45 H 1.08993 * 109.47648 * 172.34074 * 29 27 7 46 46 H 1.09003 * 109.47586 * 292.35100 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6759 -1.1657 5 6 3.4313 -0.6850 -1.2949 6 6 4.0406 -1.4457 -0.1119 7 7 3.5012 -0.8767 1.1333 8 6 4.3192 -0.5050 2.1378 9 8 3.8510 -0.1293 3.1967 10 6 5.7696 -0.5591 1.9577 11 6 6.5871 -0.0562 2.9075 12 6 6.0329 0.7593 3.9973 13 6 5.1169 1.7799 3.7147 14 6 4.5962 2.5372 4.7389 15 6 4.9876 2.2975 6.0528 16 8 4.4767 3.0501 7.0581 17 6 4.9839 2.8501 8.2907 18 1 5.8203 2.1809 8.4285 19 6 4.4316 3.5038 9.3824 20 7 3.4128 4.3183 9.2147 21 14 5.1349 3.2272 11.0907 22 1 6.5618 3.6378 11.1110 23 1 4.3727 4.0351 12.0766 24 1 5.0287 1.7884 11.4427 25 6 5.9022 1.2878 6.3378 26 6 6.4241 0.5221 5.3207 27 6 2.0416 -0.7309 1.2517 28 1 1.5788 -1.7154 1.3202 29 6 1.7049 0.0857 2.5010 30 1 -0.3634 -1.0277 0.0018 31 1 -0.3634 0.5155 0.8890 32 1 -0.3633 0.5122 -0.8909 33 1 3.8030 0.3397 -1.2993 34 1 3.7099 -1.1772 -2.2267 35 1 5.1252 -1.3376 -0.1252 36 1 3.7762 -2.5012 -0.1779 37 1 6.1868 -1.0013 1.0651 38 1 7.6481 -0.2533 2.8663 39 1 4.8163 1.9698 2.6949 40 1 3.8861 3.3214 4.5224 41 1 3.0268 4.7757 9.9781 42 1 6.2027 1.1051 7.3589 43 1 7.1340 -0.2608 5.5428 44 1 2.2698 1.0179 2.4888 45 1 0.6379 0.3076 2.5134 46 1 1.9675 -0.4865 3.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255109936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:38 Heat of formation + Delta-G solvation = -53.554219 kcal Electronic energy + Delta-G solvation = -28730.830781 eV Core-core repulsion = 24780.218062 eV Total energy + Delta-G solvation = -3950.612719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73268 -40.70710 -39.56386 -38.13366 -35.78861 -35.29208 -34.47434 -33.78325 -31.82727 -30.37898 -29.77987 -29.16328 -27.43111 -25.95004 -24.25890 -23.85996 -23.47265 -22.56087 -21.46005 -19.96287 -19.42344 -18.74060 -18.26850 -17.53132 -17.10559 -16.64323 -16.41298 -16.37453 -16.00159 -15.73102 -15.70906 -15.50780 -15.19978 -14.62439 -14.44106 -14.36545 -14.13212 -13.95104 -13.85003 -13.65890 -13.55603 -13.14274 -12.98382 -12.88767 -12.75183 -12.64251 -12.45267 -12.28432 -12.17105 -12.09346 -12.04911 -11.68264 -11.27267 -11.15567 -10.86035 -10.37486 -10.06452 -9.71876 -9.34142 -8.55798 -8.49125 -6.15958 0.00427 0.70753 1.09216 1.32981 1.46004 1.50024 1.96045 2.16832 2.43689 2.73456 2.86125 3.21742 3.50145 3.54892 3.70722 3.89432 3.95335 4.02805 4.07802 4.13777 4.16099 4.22567 4.30249 4.37344 4.42173 4.54209 4.56764 4.68297 4.75048 4.78361 4.87548 4.88751 4.93690 5.04183 5.04921 5.08967 5.17760 5.23369 5.25898 5.35511 5.46608 5.60856 5.67283 5.72614 5.82872 6.01717 6.14596 6.24451 6.50235 6.95155 7.37375 7.77577 8.74324 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.002826 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.537546 B = 9906.269897 C =10924.576152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.053 0.947 4 O -0.390 6.390 5 C 0.043 3.957 6 C 0.069 3.931 7 N -0.619 5.619 8 C 0.528 3.472 9 O -0.548 6.548 10 C -0.236 4.236 11 C 0.008 3.992 12 C -0.154 4.154 13 C 0.009 3.991 14 C -0.216 4.216 15 C 0.127 3.873 16 O -0.231 6.231 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.256 4.256 26 C -0.049 4.049 27 C 0.121 3.879 28 H 0.077 0.923 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.273 0.727 42 H 0.118 0.882 43 H 0.146 0.854 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -14.008 -22.963 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.071 0.929 4 O -0.309 6.309 5 C -0.034 4.034 6 C -0.053 4.053 7 N -0.354 5.354 8 C 0.320 3.680 9 O -0.427 6.427 10 C -0.256 4.256 11 C -0.011 4.011 12 C -0.155 4.155 13 C -0.009 4.009 14 C -0.235 4.235 15 C 0.076 3.924 16 O -0.137 6.137 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.179 1.179 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.275 4.275 26 C -0.067 4.067 27 C 0.017 3.983 28 H 0.095 0.905 29 C -0.185 4.185 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.164 0.836 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.192 -13.589 -22.427 26.416 hybrid contribution -0.142 0.409 1.280 1.351 sum 3.050 -13.181 -21.147 25.104 Atomic orbital electron populations 1.21803 0.91199 1.03633 1.03441 1.22554 0.96484 0.94471 0.84006 0.92861 1.87936 1.22437 1.77476 1.43101 1.23209 0.80160 1.00655 0.99382 1.22758 1.01582 0.98513 0.82443 1.48328 1.06115 1.63758 1.17165 1.19091 0.88783 0.76998 0.83102 1.91049 1.77050 1.47261 1.27376 1.23175 0.90936 1.08710 1.02809 1.22588 1.00547 0.88797 0.89152 1.18840 1.02636 1.00125 0.93883 1.20600 0.91569 0.92153 0.96557 1.20149 1.07193 1.05760 0.90418 1.20000 0.92728 0.90486 0.89202 1.83885 1.57977 1.55483 1.16403 1.21825 1.16074 1.29644 0.81597 0.88089 1.26661 0.96225 0.95203 1.03998 1.70171 1.24142 1.28265 1.33304 0.84633 0.78571 0.79203 0.73692 1.17871 1.19472 1.18222 1.21086 1.04846 1.01011 1.00567 1.21145 0.97341 0.96949 0.91234 1.21969 0.80621 0.99655 0.96008 0.90524 1.21985 0.99996 0.99857 0.96691 0.91153 0.90270 0.90758 0.92721 0.84723 0.85760 0.89808 0.81023 0.81319 0.86558 0.88170 0.91764 0.86381 0.83629 0.93940 0.92012 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.38 71.98 0.67 -1.65 16 2 C 0.08 1.63 2.87 30.83 0.09 1.72 16 3 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 4 O -0.39 -7.10 10.38 -148.98 -1.55 -8.64 16 5 C 0.04 0.51 6.98 72.08 0.50 1.01 16 6 C 0.07 0.83 6.55 86.35 0.57 1.40 16 7 N -0.62 -13.22 3.01 -797.91 -2.40 -15.62 16 8 C 0.53 14.07 6.54 86.33 0.56 14.63 16 9 O -0.55 -20.00 8.14 -4.40 -0.04 -20.04 16 10 C -0.24 -4.55 9.24 23.61 0.22 -4.33 16 11 C 0.01 0.18 9.78 23.82 0.23 0.42 16 12 C -0.15 -5.22 4.41 -20.13 -0.09 -5.31 16 13 C 0.01 0.37 6.71 22.55 0.15 0.52 16 14 C -0.22 -10.38 9.97 22.35 0.22 -10.15 16 15 C 0.13 6.85 6.66 22.72 0.15 7.00 16 16 O -0.23 -14.78 9.74 -20.25 -0.20 -14.98 16 17 C -0.42 -25.29 9.44 67.93 0.64 -24.65 16 18 H 0.10 5.64 5.28 -2.91 -0.02 5.62 16 19 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 20 N -0.92 -58.44 13.67 21.62 0.30 -58.14 16 21 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 C -0.26 -12.00 9.11 22.34 0.20 -11.80 16 26 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 27 C 0.12 2.76 3.14 45.10 0.14 2.91 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 C -0.13 -3.72 7.57 71.98 0.54 -3.18 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.26 6.60 -2.39 -0.02 1.25 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 0.81 5.40 -2.38 -0.01 0.79 16 36 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 37 H 0.17 1.64 5.92 -2.91 -0.02 1.62 16 38 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.12 4.05 7.29 -2.91 -0.02 4.02 16 40 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 42 H 0.12 5.57 5.69 -2.91 -0.02 5.55 16 43 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 44 H 0.04 1.42 7.05 -2.38 -0.02 1.41 16 45 H 0.06 1.54 6.47 -2.39 -0.02 1.53 16 46 H 0.05 1.94 6.53 -2.39 -0.02 1.92 16 Total: -1.00 -82.37 365.16 4.64 -77.73 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.00 Total: 27.51 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 5.50 Total: -33.97 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.11 Total: -73.77 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.78 Total: -43.66 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -82.37 4.64 -77.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255109936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.177 kcal (2) G-P(sol) polarization free energy of solvation -82.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds