Wall clock time and date at job start Tue Mar 31 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70573 * 2 1 4 4 C 1.52883 * 109.61866 * 239.70081 * 2 1 3 5 5 O 1.42961 * 109.29649 * 188.11546 * 4 2 1 6 6 C 1.42959 * 114.16567 * 62.44629 * 5 4 2 7 7 C 1.53292 * 109.22663 * 297.41952 * 6 5 4 8 8 H 1.09007 * 109.70977 * 292.56532 * 7 6 5 9 9 C 1.52993 * 109.68294 * 172.02929 * 7 6 5 10 10 N 1.47148 * 108.38425 * 52.30196 * 7 6 5 11 11 C 1.34773 * 120.98418 * 129.44393 * 10 7 6 12 12 O 1.21722 * 120.00030 * 27.22375 * 11 10 7 13 13 C 1.46257 * 120.00312 * 207.22612 * 11 10 7 14 14 C 1.35025 * 119.99783 * 187.67674 * 13 11 10 15 15 C 1.46955 * 120.00145 * 347.74914 * 14 13 11 16 16 C 1.40025 * 120.10256 * 307.37386 * 15 14 13 17 17 C 1.37596 * 119.89633 * 179.70059 * 16 15 14 18 18 C 1.39172 * 120.10498 * 0.59300 * 17 16 15 19 19 O 1.35570 * 119.90262 * 179.69848 * 18 17 16 20 20 C 1.34779 * 117.00003 * 185.70115 * 19 18 17 21 21 H 1.07995 * 120.00124 * 354.92117 * 20 19 18 22 22 C 1.38722 * 119.99940 * 174.92355 * 20 19 18 23 23 N 1.31511 * 120.00085 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99816 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47241 * 90.00077 * 24 22 20 26 26 H 1.48500 * 109.47332 * 210.00157 * 24 22 20 27 27 H 1.48496 * 109.47339 * 330.00317 * 24 22 20 28 28 C 1.39181 * 120.19967 * 359.68419 * 18 17 16 29 29 C 1.37592 * 120.10202 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.47283 * 275.42641 * 1 2 3 31 31 H 1.09003 * 109.47334 * 35.42437 * 1 2 3 32 32 H 1.09005 * 109.46936 * 155.42486 * 1 2 3 33 33 H 1.08997 * 109.58331 * 68.10125 * 4 2 1 34 34 H 1.09003 * 109.40544 * 308.02171 * 4 2 1 35 35 H 1.09002 * 109.51015 * 177.49467 * 6 5 4 36 36 H 1.09007 * 109.55303 * 57.37072 * 6 5 4 37 37 H 1.09003 * 109.46685 * 292.21300 * 9 7 6 38 38 H 1.08995 * 109.47325 * 52.21123 * 9 7 6 39 39 H 1.09004 * 109.47135 * 172.21986 * 9 7 6 40 40 H 1.07997 * 120.00013 * 7.67135 * 13 11 10 41 41 H 1.08005 * 119.99396 * 168.02186 * 14 13 11 42 42 H 1.08003 * 120.04768 * 0.02562 * 16 15 14 43 43 H 1.08005 * 119.94855 * 180.27925 * 17 16 15 44 44 H 0.97000 * 119.99870 * 179.97438 * 23 22 20 45 45 H 1.07998 * 119.94691 * 180.02562 * 28 18 17 46 46 H 1.08008 * 120.05218 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0434 -0.7265 -1.2434 5 8 3.4602 -0.8892 -1.1442 6 6 3.8812 -1.6921 -0.0389 7 6 3.4629 -1.0101 1.2687 8 1 4.0284 -0.0874 1.3993 9 6 3.7289 -1.9486 2.4474 10 7 2.0256 -0.7040 1.1933 11 6 1.1869 -1.0628 2.1854 12 8 1.6043 -1.1798 3.3228 13 6 -0.2248 -1.3117 1.8954 14 6 -1.0955 -1.5186 2.9065 15 6 -0.5968 -1.7620 4.2673 16 6 0.3528 -2.7648 4.4984 17 6 0.8213 -2.9850 5.7732 18 6 0.3437 -2.2212 6.8341 19 8 0.8037 -2.4457 8.0895 20 6 0.2178 -1.7560 9.0883 21 1 -0.5226 -1.0029 8.8626 22 6 0.5658 -2.0136 10.4062 23 7 -0.0055 -1.3403 11.3808 24 14 1.8460 -3.3168 10.7965 25 1 3.1940 -2.6943 10.8227 26 1 1.5524 -3.9177 12.1224 27 1 1.8094 -4.3744 9.7547 28 6 -0.6045 -1.2272 6.6101 29 6 -1.0743 -0.9959 5.3378 30 1 -0.3634 0.0972 1.0230 31 1 -0.3634 0.8374 -0.5957 32 1 -0.3633 -0.9346 -0.4274 33 1 1.8052 -0.1424 -2.1322 34 1 1.5684 -1.7052 -1.3129 35 1 4.9654 -1.8027 -0.0613 36 1 3.4136 -2.6748 -0.1027 37 1 3.0537 -2.8025 2.3914 38 1 4.7606 -2.2980 2.4080 39 1 3.5616 -1.4139 3.3824 40 1 -0.5709 -1.3300 0.8725 41 1 -2.1582 -1.5095 2.7143 42 1 0.7208 -3.3609 3.6764 43 1 1.5571 -3.7552 5.9517 44 1 0.2377 -1.5207 12.3023 45 1 -0.9719 -0.6367 7.4363 46 1 -1.8099 -0.2241 5.1648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255121476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:11 Heat of formation + Delta-G solvation = 14.472186 kcal Electronic energy + Delta-G solvation = -28960.526472 eV Core-core repulsion = 25012.863599 eV Total energy + Delta-G solvation = -3947.662873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04580 -39.16250 -38.42889 -36.62946 -35.69104 -34.60953 -32.76649 -32.22934 -30.20710 -29.69951 -28.97872 -27.13046 -26.19961 -25.15767 -23.48712 -22.22992 -21.92265 -21.42589 -20.20035 -18.98678 -17.82136 -17.27602 -16.96648 -16.74562 -16.14823 -15.75028 -15.46607 -14.79062 -14.77060 -14.58984 -14.26377 -13.98711 -13.84870 -13.68944 -13.52332 -13.24991 -12.97459 -12.64553 -12.53543 -12.24879 -12.20466 -12.11576 -12.02106 -11.75547 -11.67676 -11.25454 -11.15492 -11.07105 -10.85877 -10.68103 -10.42523 -10.33973 -10.11372 -9.37896 -9.19790 -8.91149 -8.72682 -8.50478 -7.99961 -6.98280 -6.40810 -4.05039 1.18454 2.33649 2.53972 2.82337 3.24239 3.27022 3.36319 3.41963 3.46023 4.25241 4.28606 4.49542 4.57653 4.62315 4.71126 4.76490 4.85147 4.92261 5.00225 5.06493 5.10703 5.14524 5.19716 5.34706 5.38968 5.46397 5.53606 5.59188 5.66759 5.68028 5.77282 5.83187 5.99440 6.19035 6.20464 6.36382 6.38080 6.50326 6.61027 6.68506 6.74378 6.93386 7.19180 7.31936 7.39497 7.47652 7.68708 7.85731 8.07929 8.37533 8.94610 9.59530 10.66737 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.002912 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.206218 B = 9614.509524 C =10503.942238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.112 3.888 3 H 0.080 0.920 4 C 0.050 3.950 5 O -0.381 6.381 6 C 0.052 3.948 7 C 0.119 3.881 8 H 0.074 0.926 9 C -0.155 4.155 10 N -0.632 5.632 11 C 0.550 3.450 12 O -0.491 6.491 13 C -0.286 4.286 14 C 0.000 4.000 15 C -0.173 4.173 16 C 0.008 3.992 17 C -0.201 4.201 18 C 0.175 3.825 19 O -0.215 6.215 20 C -0.387 4.387 21 H 0.107 0.893 22 C 0.063 3.937 23 N -0.879 5.879 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.235 4.235 29 C -0.049 4.049 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.279 0.721 45 H 0.131 0.869 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 0.324 -26.321 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.008 3.992 3 H 0.098 0.902 4 C -0.027 4.027 5 O -0.299 6.299 6 C -0.026 4.026 7 C 0.015 3.985 8 H 0.092 0.908 9 C -0.212 4.212 10 N -0.372 5.372 11 C 0.342 3.658 12 O -0.365 6.365 13 C -0.306 4.306 14 C -0.019 4.019 15 C -0.174 4.174 16 C -0.010 4.010 17 C -0.221 4.221 18 C 0.122 3.878 19 O -0.119 6.119 20 C -0.463 4.463 21 H 0.125 0.875 22 C -0.140 4.140 23 N -0.517 5.517 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.254 4.254 29 C -0.067 4.067 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.177 0.823 41 H 0.139 0.861 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.148 0.852 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.280 0.225 -25.447 25.550 hybrid contribution 0.301 -0.275 0.342 0.532 sum 2.581 -0.050 -25.105 25.238 Atomic orbital electron populations 1.23553 0.93900 1.01857 1.05380 1.21695 0.95310 0.96530 0.85618 0.90192 1.23056 0.81887 1.00142 0.97642 1.87948 1.21902 1.71917 1.48155 1.23116 1.00727 0.93498 0.85219 1.21758 0.81432 0.99201 0.96077 0.90759 1.22129 1.00648 0.99347 0.99082 1.48150 1.07438 1.61583 1.19979 1.18452 0.86758 0.76662 0.83955 1.90950 1.76990 1.49105 1.19478 1.24447 0.93925 1.10223 1.02020 1.22369 0.98199 0.88916 0.92425 1.18374 1.04466 1.02671 0.91905 1.20374 0.91689 0.94544 0.94397 1.19986 1.06458 1.04161 0.91466 1.19262 0.91189 0.92256 0.85075 1.83503 1.55210 1.60657 1.12542 1.20816 1.23035 1.18464 0.83975 0.87546 1.24485 0.97793 0.97835 0.93903 1.69627 1.41675 1.40389 0.99966 0.86180 0.81022 0.81826 0.77896 1.19862 1.20808 1.18299 1.21066 1.03717 1.03060 0.97572 1.20792 0.97214 0.97004 0.91719 0.86992 0.91559 0.90704 0.87917 0.92550 0.87810 0.92591 0.92404 0.92448 0.88617 0.82259 0.86090 0.87952 0.86922 0.91038 0.85165 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 7.52 37.16 0.28 -0.96 16 2 C 0.11 0.95 3.67 -67.63 -0.25 0.70 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.05 0.37 6.21 37.10 0.23 0.60 16 5 O -0.38 -3.69 10.74 -35.23 -0.38 -4.07 16 6 C 0.05 0.46 6.28 37.31 0.23 0.70 16 7 C 0.12 1.30 3.66 -67.43 -0.25 1.05 16 8 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 9 C -0.15 -1.88 7.77 37.15 0.29 -1.60 16 10 N -0.63 -7.21 3.02 -159.19 -0.48 -7.69 16 11 C 0.55 7.60 6.22 -13.04 -0.08 7.52 16 12 O -0.49 -8.67 8.99 5.17 0.05 -8.62 16 13 C -0.29 -3.26 6.73 -37.50 -0.25 -3.52 16 14 C 0.00 0.00 9.75 -37.20 -0.36 -0.36 16 15 C -0.17 -3.02 4.32 -105.03 -0.45 -3.47 16 16 C 0.01 0.16 6.67 -39.15 -0.26 -0.10 16 17 C -0.20 -4.29 9.97 -39.47 -0.39 -4.68 16 18 C 0.17 4.24 6.66 -38.88 -0.26 3.98 16 19 O -0.21 -5.87 8.57 0.75 0.01 -5.86 16 20 C -0.39 -11.18 9.94 30.91 0.31 -10.87 16 21 H 0.11 3.14 5.41 -52.49 -0.28 2.85 16 22 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 23 N -0.88 -25.74 13.96 55.48 0.77 -24.96 16 24 Si 0.91 22.10 28.62 -169.99 -4.86 17.23 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.24 -5.32 9.14 -39.47 -0.36 -5.68 16 29 C -0.05 -0.93 9.78 -39.15 -0.38 -1.31 16 30 H 0.11 0.95 4.21 -84.32 -0.36 0.59 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.38 6.29 -51.93 -0.33 0.06 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.39 7.94 -51.93 -0.41 -0.02 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.06 0.75 7.50 -51.93 -0.39 0.36 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.49 6.35 -51.93 -0.33 1.16 16 40 H 0.16 1.28 3.59 -77.17 -0.28 1.01 16 41 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 42 H 0.10 1.71 7.78 -52.48 -0.41 1.30 16 43 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 3.08 5.62 -52.49 -0.29 2.79 16 46 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.71 359.19 -7.98 -40.69 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.44 Total: 4.17 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.06 Total: -16.29 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.29 Total: -32.65 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.33 Total: -18.55 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.71 -7.98 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255121476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.161 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds