Wall clock time and date at job start Tue Mar 31 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70573 * 2 1 4 4 C 1.52883 * 109.61866 * 239.70081 * 2 1 3 5 5 O 1.42961 * 109.29649 * 188.11546 * 4 2 1 6 6 C 1.42959 * 114.16567 * 62.44629 * 5 4 2 7 7 C 1.53292 * 109.22663 * 297.41952 * 6 5 4 8 8 H 1.09007 * 109.70977 * 292.56532 * 7 6 5 9 9 C 1.52993 * 109.68294 * 172.02929 * 7 6 5 10 10 N 1.47148 * 108.38425 * 52.30196 * 7 6 5 11 11 C 1.34773 * 120.98418 * 129.44393 * 10 7 6 12 12 O 1.21722 * 120.00030 * 27.22375 * 11 10 7 13 13 C 1.46257 * 120.00312 * 207.22612 * 11 10 7 14 14 C 1.35025 * 119.99783 * 187.67674 * 13 11 10 15 15 C 1.46955 * 120.00145 * 347.74914 * 14 13 11 16 16 C 1.40025 * 120.10256 * 307.37386 * 15 14 13 17 17 C 1.37596 * 119.89633 * 179.70059 * 16 15 14 18 18 C 1.39172 * 120.10498 * 0.59300 * 17 16 15 19 19 O 1.35570 * 119.90262 * 179.69848 * 18 17 16 20 20 C 1.34779 * 117.00003 * 185.70115 * 19 18 17 21 21 H 1.07995 * 120.00124 * 354.92117 * 20 19 18 22 22 C 1.38722 * 119.99940 * 174.92355 * 20 19 18 23 23 N 1.31511 * 120.00085 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99816 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47241 * 90.00077 * 24 22 20 26 26 H 1.48500 * 109.47332 * 210.00157 * 24 22 20 27 27 H 1.48496 * 109.47339 * 330.00317 * 24 22 20 28 28 C 1.39181 * 120.19967 * 359.68419 * 18 17 16 29 29 C 1.37592 * 120.10202 * 0.02562 * 28 18 17 30 30 H 1.08998 * 109.47283 * 275.42641 * 1 2 3 31 31 H 1.09003 * 109.47334 * 35.42437 * 1 2 3 32 32 H 1.09005 * 109.46936 * 155.42486 * 1 2 3 33 33 H 1.08997 * 109.58331 * 68.10125 * 4 2 1 34 34 H 1.09003 * 109.40544 * 308.02171 * 4 2 1 35 35 H 1.09002 * 109.51015 * 177.49467 * 6 5 4 36 36 H 1.09007 * 109.55303 * 57.37072 * 6 5 4 37 37 H 1.09003 * 109.46685 * 292.21300 * 9 7 6 38 38 H 1.08995 * 109.47325 * 52.21123 * 9 7 6 39 39 H 1.09004 * 109.47135 * 172.21986 * 9 7 6 40 40 H 1.07997 * 120.00013 * 7.67135 * 13 11 10 41 41 H 1.08005 * 119.99396 * 168.02186 * 14 13 11 42 42 H 1.08003 * 120.04768 * 0.02562 * 16 15 14 43 43 H 1.08005 * 119.94855 * 180.27925 * 17 16 15 44 44 H 0.97000 * 119.99870 * 179.97438 * 23 22 20 45 45 H 1.07998 * 119.94691 * 180.02562 * 28 18 17 46 46 H 1.08008 * 120.05218 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0434 -0.7265 -1.2434 5 8 3.4602 -0.8892 -1.1442 6 6 3.8812 -1.6921 -0.0389 7 6 3.4629 -1.0101 1.2687 8 1 4.0284 -0.0874 1.3993 9 6 3.7289 -1.9486 2.4474 10 7 2.0256 -0.7040 1.1933 11 6 1.1869 -1.0628 2.1854 12 8 1.6043 -1.1798 3.3228 13 6 -0.2248 -1.3117 1.8954 14 6 -1.0955 -1.5186 2.9065 15 6 -0.5968 -1.7620 4.2673 16 6 0.3528 -2.7648 4.4984 17 6 0.8213 -2.9850 5.7732 18 6 0.3437 -2.2212 6.8341 19 8 0.8037 -2.4457 8.0895 20 6 0.2178 -1.7560 9.0883 21 1 -0.5226 -1.0029 8.8626 22 6 0.5658 -2.0136 10.4062 23 7 -0.0055 -1.3403 11.3808 24 14 1.8460 -3.3168 10.7965 25 1 3.1940 -2.6943 10.8227 26 1 1.5524 -3.9177 12.1224 27 1 1.8094 -4.3744 9.7547 28 6 -0.6045 -1.2272 6.6101 29 6 -1.0743 -0.9959 5.3378 30 1 -0.3634 0.0972 1.0230 31 1 -0.3634 0.8374 -0.5957 32 1 -0.3633 -0.9346 -0.4274 33 1 1.8052 -0.1424 -2.1322 34 1 1.5684 -1.7052 -1.3129 35 1 4.9654 -1.8027 -0.0613 36 1 3.4136 -2.6748 -0.1027 37 1 3.0537 -2.8025 2.3914 38 1 4.7606 -2.2980 2.4080 39 1 3.5616 -1.4139 3.3824 40 1 -0.5709 -1.3300 0.8725 41 1 -2.1582 -1.5095 2.7143 42 1 0.7208 -3.3609 3.6764 43 1 1.5571 -3.7552 5.9517 44 1 0.2377 -1.5207 12.3023 45 1 -0.9719 -0.6367 7.4363 46 1 -1.8099 -0.2241 5.1648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255121476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:10 Heat of formation + Delta-G solvation = -6.883546 kcal Electronic energy + Delta-G solvation = -28961.452526 eV Core-core repulsion = 25012.863599 eV Total energy + Delta-G solvation = -3948.588927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97420 -40.80614 -39.50683 -38.19211 -36.53697 -35.59721 -34.52318 -33.66357 -31.84525 -30.55426 -30.27918 -28.05534 -27.46817 -26.69939 -24.49453 -23.61270 -23.07734 -22.66461 -21.30309 -20.12570 -19.66123 -19.09808 -17.82189 -17.62712 -17.13070 -16.69387 -16.49532 -16.38716 -15.87674 -15.73776 -15.58534 -15.54458 -15.26465 -15.08645 -14.51667 -14.48580 -14.34064 -14.10697 -14.01322 -13.75079 -13.38847 -13.16310 -12.94901 -12.82246 -12.68841 -12.56847 -12.50085 -12.43422 -12.09108 -11.97157 -11.84627 -11.38906 -11.30953 -11.15271 -10.91628 -10.31640 -9.88347 -9.70578 -9.31721 -8.59816 -8.52589 -6.23747 0.02518 0.69332 1.01471 1.27550 1.33699 1.48649 1.96082 2.25764 2.31893 2.77808 2.85168 3.10249 3.18217 3.61007 3.69980 3.90105 3.99494 4.04271 4.05889 4.10596 4.15457 4.18250 4.23166 4.41119 4.49759 4.54582 4.59567 4.64424 4.71030 4.76467 4.83803 4.91152 4.96156 4.96695 5.10127 5.18704 5.24481 5.28176 5.32243 5.42775 5.47400 5.66822 5.71255 5.78632 5.83385 5.90800 6.11087 6.27910 6.53115 6.81546 7.32321 7.58289 8.59052 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.002912 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.206218 B = 9614.509524 C =10503.942238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.076 0.924 4 C 0.049 3.951 5 O -0.395 6.395 6 C 0.061 3.939 7 C 0.115 3.885 8 H 0.066 0.934 9 C -0.145 4.145 10 N -0.630 5.630 11 C 0.536 3.464 12 O -0.540 6.540 13 C -0.247 4.247 14 C -0.028 4.028 15 C -0.139 4.139 16 C 0.011 3.989 17 C -0.205 4.205 18 C 0.130 3.870 19 O -0.246 6.246 20 C -0.400 4.400 21 H 0.080 0.920 22 C 0.011 3.989 23 N -0.922 5.922 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.263 1.263 27 H -0.265 1.265 28 C -0.251 4.251 29 C -0.060 4.060 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.207 0.793 41 H 0.165 0.835 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.285 0.715 45 H 0.105 0.895 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -0.312 -31.718 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.002 3.998 3 H 0.094 0.906 4 C -0.028 4.028 5 O -0.314 6.314 6 C -0.017 4.017 7 C 0.011 3.989 8 H 0.084 0.916 9 C -0.203 4.203 10 N -0.368 5.368 11 C 0.329 3.671 12 O -0.418 6.418 13 C -0.266 4.266 14 C -0.047 4.047 15 C -0.140 4.140 16 C -0.007 4.007 17 C -0.225 4.225 18 C 0.081 3.919 19 O -0.153 6.153 20 C -0.477 4.477 21 H 0.098 0.902 22 C -0.188 4.188 23 N -0.563 5.563 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.187 1.187 27 H -0.189 1.189 28 C -0.270 4.270 29 C -0.078 4.078 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.223 0.777 41 H 0.182 0.818 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.916 -0.391 -30.935 30.997 hybrid contribution 0.403 0.095 1.437 1.496 sum 2.319 -0.296 -29.498 29.590 Atomic orbital electron populations 1.23479 0.91979 1.04330 1.04620 1.21989 0.96942 0.96121 0.84752 0.90632 1.23254 0.80715 1.01039 0.97796 1.87944 1.23456 1.72009 1.47964 1.23062 1.01767 0.93182 0.83672 1.21818 0.81455 0.98760 0.96845 0.91618 1.21958 1.01654 0.98744 0.97900 1.48291 1.07451 1.60680 1.20365 1.19076 0.88059 0.76258 0.83722 1.90968 1.78070 1.51260 1.21536 1.24980 0.91755 1.05985 1.03908 1.22549 1.00616 0.91932 0.89627 1.18930 1.01286 0.99679 0.94103 1.20676 0.91509 0.94905 0.93639 1.20230 1.06497 1.03820 0.91908 1.19734 0.93163 0.94197 0.84815 1.83445 1.56749 1.61890 1.13248 1.20743 1.23141 1.18577 0.85193 0.90238 1.25285 0.99919 1.00041 0.93514 1.69706 1.43724 1.42425 1.00472 0.85227 0.78479 0.78972 0.78073 1.19224 1.18721 1.18891 1.21089 1.04211 1.02959 0.98752 1.21138 0.97935 0.98078 0.90643 0.88823 0.89010 0.88207 0.85351 0.91385 0.86316 0.92022 0.93288 0.90509 0.92504 0.77679 0.81778 0.85554 0.86568 0.90487 0.87682 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 7.52 71.98 0.54 -0.77 16 2 C 0.10 1.31 3.67 44.83 0.16 1.47 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 4 C 0.05 0.48 6.21 71.94 0.45 0.93 16 5 O -0.40 -6.18 10.74 -148.98 -1.60 -7.78 16 6 C 0.06 0.90 6.28 72.08 0.45 1.35 16 7 C 0.11 2.31 3.66 44.96 0.16 2.47 16 8 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 9 C -0.15 -3.46 7.77 71.98 0.56 -2.90 16 10 N -0.63 -12.57 3.02 -775.78 -2.35 -14.92 16 11 C 0.54 13.39 6.22 86.33 0.54 13.93 16 12 O -0.54 -18.73 8.99 -4.42 -0.04 -18.77 16 13 C -0.25 -4.42 6.73 23.62 0.16 -4.26 16 14 C -0.03 -0.60 9.75 23.82 0.23 -0.37 16 15 C -0.14 -4.60 4.32 -20.13 -0.09 -4.69 16 16 C 0.01 0.40 6.67 22.55 0.15 0.55 16 17 C -0.21 -9.04 9.97 22.34 0.22 -8.82 16 18 C 0.13 6.73 6.66 22.72 0.15 6.88 16 19 O -0.25 -14.43 8.57 -20.25 -0.17 -14.60 16 20 C -0.40 -24.97 9.94 67.94 0.68 -24.30 16 21 H 0.08 5.19 5.41 -2.91 -0.02 5.18 16 22 C 0.01 0.65 5.49 84.86 0.47 1.12 16 23 N -0.92 -57.01 13.96 21.62 0.30 -56.71 16 24 Si 0.97 47.64 28.62 68.60 1.96 49.61 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -13.05 7.11 99.48 0.71 -12.34 16 28 C -0.25 -12.11 9.14 22.34 0.20 -11.90 16 29 C -0.06 -2.27 9.78 22.55 0.22 -2.05 16 30 H 0.09 1.05 4.21 -32.81 -0.14 0.91 16 31 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.26 6.29 -2.38 -0.02 0.24 16 33 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.55 7.94 -2.39 -0.02 0.53 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.05 1.23 7.50 -2.39 -0.02 1.21 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.83 6.35 -2.38 -0.02 1.81 16 40 H 0.21 1.85 3.59 -26.10 -0.09 1.76 16 41 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.13 3.95 7.78 -2.91 -0.02 3.93 16 43 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 45 H 0.11 5.51 5.62 -2.91 -0.02 5.49 16 46 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -79.50 359.19 4.16 -75.35 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.79 Total: 19.21 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.26 Total: -31.37 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -2.04 Total: -71.63 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.81 Total: -41.16 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.96 Total: 49.61 kcal Total: -79.50 4.16 -75.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255121476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.464 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds