Wall clock time and date at job start Tue Mar 31 2020 17:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.71035 * 2 1 4 4 C 1.53717 * 109.83656 * 239.29063 * 2 1 3 5 5 O 1.42971 * 109.14692 * 292.85377 * 4 2 1 6 6 C 1.42957 * 114.16542 * 297.29430 * 5 4 2 7 7 C 1.53296 * 109.22738 * 62.57732 * 6 5 4 8 8 H 1.08997 * 109.68152 * 67.42162 * 7 6 5 9 9 C 1.53000 * 109.68023 * 187.97649 * 7 6 5 10 10 N 1.47150 * 109.68469 * 120.53938 * 2 1 3 11 11 C 1.34778 * 120.98215 * 249.20960 * 10 2 1 12 12 O 1.21722 * 119.99958 * 185.35896 * 11 10 2 13 13 C 1.46252 * 119.99750 * 5.36168 * 11 10 2 14 14 C 1.35020 * 120.00040 * 172.67781 * 13 11 10 15 15 C 1.46965 * 119.99812 * 345.96490 * 14 13 11 16 16 C 1.40024 * 120.09900 * 317.93600 * 15 14 13 17 17 C 1.37602 * 119.89837 * 179.97438 * 16 15 14 18 18 C 1.39177 * 120.09966 * 359.97438 * 17 16 15 19 19 O 1.35566 * 119.89736 * 179.97438 * 18 17 16 20 20 C 1.34782 * 116.99884 * 5.86822 * 19 18 17 21 21 H 1.07997 * 120.00367 * 354.58210 * 20 19 18 22 22 C 1.38720 * 119.99768 * 174.84808 * 20 19 18 23 23 N 1.31507 * 120.00198 * 359.73356 * 22 20 19 24 24 Si 1.86800 * 120.00025 * 179.72282 * 22 20 19 25 25 H 1.48503 * 109.46748 * 90.00655 * 24 22 20 26 26 H 1.48501 * 109.47475 * 210.00314 * 24 22 20 27 27 H 1.48499 * 109.47389 * 330.00861 * 24 22 20 28 28 C 1.39173 * 120.20199 * 0.25939 * 18 17 16 29 29 C 1.37604 * 120.10376 * 359.48323 * 28 18 17 30 30 H 1.09001 * 109.47139 * 299.45508 * 1 2 3 31 31 H 1.09001 * 109.47702 * 59.46285 * 1 2 3 32 32 H 1.09002 * 109.47111 * 179.46120 * 1 2 3 33 33 H 1.08999 * 109.65949 * 172.88930 * 4 2 1 34 34 H 1.09000 * 109.48725 * 52.71512 * 4 2 1 35 35 H 1.09009 * 109.51118 * 302.64854 * 6 5 4 36 36 H 1.09001 * 109.55660 * 182.52942 * 6 5 4 37 37 H 1.08999 * 109.46694 * 185.40705 * 9 7 6 38 38 H 1.08994 * 109.47112 * 305.40386 * 9 7 6 39 39 H 1.09002 * 109.47436 * 65.41212 * 9 7 6 40 40 H 1.07998 * 119.99908 * 352.67401 * 13 11 10 41 41 H 1.07998 * 120.00072 * 165.96069 * 14 13 11 42 42 H 1.08004 * 120.05069 * 359.95419 * 16 15 14 43 43 H 1.08003 * 119.94761 * 180.02562 * 17 16 15 44 44 H 0.96997 * 120.00267 * 179.97438 * 23 22 20 45 45 H 1.08001 * 119.95128 * 179.74067 * 28 18 17 46 46 H 1.07997 * 120.05275 * 180.23209 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0516 -0.7384 -1.2432 5 8 1.7173 -2.1247 -1.1399 6 6 2.3218 -2.7912 -0.0291 7 6 1.8190 -2.1588 1.2737 8 1 0.7577 -2.3724 1.3998 9 6 2.6039 -2.7260 2.4583 10 7 2.0257 -0.7040 1.1933 11 6 2.6455 -0.0354 2.1859 12 8 3.1346 -0.6461 3.1183 13 6 2.7304 1.4241 2.1426 14 6 3.2177 2.1037 3.2026 15 6 3.3728 1.4297 4.4994 16 6 2.3733 0.5675 4.9666 17 6 2.5231 -0.0618 6.1811 18 6 3.6660 0.1571 6.9445 19 8 3.8091 -0.4646 8.1406 20 6 2.8697 -1.3714 8.4751 21 1 2.0049 -1.5112 7.8435 22 6 3.0111 -2.1214 9.6335 23 7 4.0641 -1.9513 10.4026 24 14 1.7054 -3.3728 10.1011 25 1 2.0451 -4.6893 9.5038 26 1 1.6484 -3.4999 11.5796 27 1 0.3846 -2.9241 9.5916 28 6 4.6599 1.0170 6.4863 29 6 4.5212 1.6466 5.2706 30 1 -0.3633 0.5053 0.8948 31 1 -0.3634 0.5221 -0.8851 32 1 -0.3633 -1.0276 -0.0097 33 1 3.1342 -0.6288 -1.3075 34 1 1.5895 -0.3181 -2.1364 35 1 3.4054 -2.6891 -0.0889 36 1 2.0542 -3.8477 -0.0478 37 1 2.1809 -2.3476 3.3889 38 1 2.5425 -3.8141 2.4472 39 1 3.6474 -2.4201 2.3827 40 1 2.4034 1.9581 1.2627 41 1 3.4935 3.1426 3.0976 42 1 1.4861 0.3970 4.3749 43 1 1.7528 -0.7273 6.5421 44 1 4.1628 -2.4754 11.2128 45 1 5.5432 1.1872 7.0838 46 1 5.2946 2.3107 4.9141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255121477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:15 Heat of formation + Delta-G solvation = -30.200129 kcal Electronic energy + Delta-G solvation = -29009.726981 eV Core-core repulsion = 25060.126972 eV Total energy + Delta-G solvation = -3949.600009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77799 -39.09304 -38.32126 -36.51718 -35.06438 -34.05176 -32.75761 -32.09205 -30.14853 -29.97670 -27.98563 -27.27900 -25.80372 -25.36952 -23.84357 -22.33394 -21.87400 -21.41750 -20.05121 -18.09542 -17.98401 -17.44889 -16.78476 -16.56869 -16.12374 -15.49668 -15.36189 -15.01269 -14.69970 -14.43849 -14.39274 -13.74976 -13.58445 -13.40125 -13.29017 -13.01362 -12.96972 -12.70066 -12.59909 -12.35866 -12.19499 -11.98138 -11.87149 -11.69898 -11.52314 -11.30166 -11.14082 -10.97200 -10.83057 -10.72043 -10.55369 -10.43333 -10.29084 -9.39834 -9.20122 -8.91474 -8.66398 -8.45268 -7.91792 -6.88277 -6.47049 -4.02407 1.21002 2.39583 2.68069 2.89611 3.13062 3.14821 3.18377 3.54838 3.58502 3.96442 4.41471 4.55694 4.63565 4.68908 4.75208 4.90854 4.95922 5.09836 5.19253 5.23657 5.26755 5.28295 5.31771 5.38585 5.52186 5.55758 5.59373 5.65177 5.73077 5.83249 5.85478 5.96261 6.22644 6.23598 6.24999 6.39593 6.46049 6.62567 6.74798 6.76758 6.85014 7.01523 7.11505 7.31412 7.44823 7.49004 7.55062 7.89980 7.99761 8.51448 8.98791 9.69855 10.70728 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.003300 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.657190 B = 8481.560177 C = 9719.185866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.100 3.900 3 H 0.103 0.897 4 C 0.052 3.948 5 O -0.379 6.379 6 C 0.050 3.950 7 C 0.114 3.886 8 H 0.074 0.926 9 C -0.136 4.136 10 N -0.615 5.615 11 C 0.546 3.454 12 O -0.501 6.501 13 C -0.275 4.275 14 C 0.030 3.970 15 C -0.188 4.188 16 C 0.012 3.988 17 C -0.242 4.242 18 C 0.171 3.829 19 O -0.172 6.172 20 C -0.389 4.389 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.208 4.208 29 C -0.044 4.044 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 4.285 -22.218 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 H 0.120 0.880 4 C -0.026 4.026 5 O -0.297 6.297 6 C -0.027 4.027 7 C 0.011 3.989 8 H 0.092 0.908 9 C -0.193 4.193 10 N -0.352 5.352 11 C 0.338 3.662 12 O -0.377 6.377 13 C -0.295 4.295 14 C 0.010 3.990 15 C -0.189 4.189 16 C -0.006 4.006 17 C -0.262 4.262 18 C 0.117 3.883 19 O -0.074 6.074 20 C -0.465 4.465 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.228 4.228 29 C -0.063 4.063 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.114 0.886 43 H 0.141 0.859 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.124 3.755 -21.394 22.317 hybrid contribution -0.606 -0.475 0.149 0.784 sum -5.730 3.280 -21.245 22.247 Atomic orbital electron populations 1.22054 0.94371 1.03017 1.02222 1.22083 0.95366 0.97408 0.85525 0.87964 1.23075 0.99753 0.82250 0.97490 1.87932 1.72115 1.21883 1.47803 1.23139 0.97398 0.96964 0.85241 1.21877 1.00374 0.80139 0.96540 0.90838 1.22144 1.01738 0.98106 0.97324 1.48252 1.59364 1.07363 1.20174 1.18438 0.77946 0.88447 0.81347 1.91037 1.45179 1.68433 1.33094 1.22716 1.12784 0.93191 1.00849 1.22336 0.87647 0.97731 0.91274 1.18286 0.98399 1.06577 0.95617 1.20566 0.96184 0.90859 0.93009 1.20950 1.00278 1.07381 0.97561 1.19526 0.92479 0.90931 0.85413 1.83901 1.47673 1.47703 1.28152 1.21388 1.01413 1.15285 1.08403 0.88925 1.25317 0.97953 0.97940 0.95296 1.70018 1.27068 1.39076 1.13242 0.85707 0.79691 0.79907 0.78128 1.19791 1.20207 1.19142 1.20004 1.00100 1.04341 0.98313 1.20633 0.95692 0.97175 0.92768 0.92078 0.91559 0.91733 0.92662 0.87931 0.92609 0.87928 0.89969 0.93937 0.90895 0.86185 0.86147 0.88602 0.85865 0.91936 0.86660 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.25 37.16 0.34 -0.94 16 2 C 0.10 0.88 3.11 -67.20 -0.21 0.68 16 3 H 0.10 0.76 5.50 -51.93 -0.29 0.47 16 4 C 0.05 0.43 6.38 37.53 0.24 0.67 16 5 O -0.38 -3.93 10.37 -35.23 -0.37 -4.29 16 6 C 0.05 0.51 6.29 37.31 0.23 0.75 16 7 C 0.11 1.36 3.28 -67.42 -0.22 1.14 16 8 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 9 C -0.14 -1.94 7.62 37.16 0.28 -1.66 16 10 N -0.61 -7.43 2.71 -158.70 -0.43 -7.86 16 11 C 0.55 8.07 6.49 -13.04 -0.08 7.99 16 12 O -0.50 -9.28 7.98 5.17 0.04 -9.24 16 13 C -0.27 -3.47 9.18 -37.51 -0.34 -3.82 16 14 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 15 C -0.19 -3.39 4.52 -105.03 -0.47 -3.87 16 16 C 0.01 0.25 6.70 -39.14 -0.26 -0.02 16 17 C -0.24 -5.58 9.14 -39.46 -0.36 -5.94 16 18 C 0.17 4.31 6.66 -38.89 -0.26 4.05 16 19 O -0.17 -5.02 9.74 0.75 0.01 -5.01 16 20 C -0.39 -11.08 9.48 30.91 0.29 -10.78 16 21 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 24 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.21 -4.59 9.97 -39.47 -0.39 -4.98 16 29 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.60 7.21 -51.93 -0.37 0.22 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.42 6.76 -51.93 -0.35 1.07 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 1.18 6.81 -51.93 -0.35 0.83 16 40 H 0.12 1.11 5.96 -52.49 -0.31 0.80 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.10 1.79 7.04 -52.48 -0.37 1.42 16 43 H 0.12 2.87 5.62 -52.48 -0.29 2.57 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -32.86 365.72 -7.93 -40.79 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.37 Total: 5.88 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.06 Total: -16.90 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.33 Total: -32.51 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.32 Total: -18.55 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.86 -7.93 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255121477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.591 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds