Wall clock time and date at job start Tue Mar 31 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.71035 * 2 1 4 4 C 1.53717 * 109.83656 * 239.29063 * 2 1 3 5 5 O 1.42971 * 109.14692 * 292.85377 * 4 2 1 6 6 C 1.42957 * 114.16542 * 297.29430 * 5 4 2 7 7 C 1.53296 * 109.22738 * 62.57732 * 6 5 4 8 8 H 1.08997 * 109.68152 * 67.42162 * 7 6 5 9 9 C 1.53000 * 109.68023 * 187.97649 * 7 6 5 10 10 N 1.47150 * 109.68469 * 120.53938 * 2 1 3 11 11 C 1.34778 * 120.98215 * 249.20960 * 10 2 1 12 12 O 1.21722 * 119.99958 * 185.35896 * 11 10 2 13 13 C 1.46252 * 119.99750 * 5.36168 * 11 10 2 14 14 C 1.35020 * 120.00040 * 172.67781 * 13 11 10 15 15 C 1.46965 * 119.99812 * 345.96490 * 14 13 11 16 16 C 1.40024 * 120.09900 * 317.93600 * 15 14 13 17 17 C 1.37602 * 119.89837 * 179.97438 * 16 15 14 18 18 C 1.39177 * 120.09966 * 359.97438 * 17 16 15 19 19 O 1.35566 * 119.89736 * 179.97438 * 18 17 16 20 20 C 1.34782 * 116.99884 * 5.86822 * 19 18 17 21 21 H 1.07997 * 120.00367 * 354.58210 * 20 19 18 22 22 C 1.38720 * 119.99768 * 174.84808 * 20 19 18 23 23 N 1.31507 * 120.00198 * 359.73356 * 22 20 19 24 24 Si 1.86800 * 120.00025 * 179.72282 * 22 20 19 25 25 H 1.48503 * 109.46748 * 90.00655 * 24 22 20 26 26 H 1.48501 * 109.47475 * 210.00314 * 24 22 20 27 27 H 1.48499 * 109.47389 * 330.00861 * 24 22 20 28 28 C 1.39173 * 120.20199 * 0.25939 * 18 17 16 29 29 C 1.37604 * 120.10376 * 359.48323 * 28 18 17 30 30 H 1.09001 * 109.47139 * 299.45508 * 1 2 3 31 31 H 1.09001 * 109.47702 * 59.46285 * 1 2 3 32 32 H 1.09002 * 109.47111 * 179.46120 * 1 2 3 33 33 H 1.08999 * 109.65949 * 172.88930 * 4 2 1 34 34 H 1.09000 * 109.48725 * 52.71512 * 4 2 1 35 35 H 1.09009 * 109.51118 * 302.64854 * 6 5 4 36 36 H 1.09001 * 109.55660 * 182.52942 * 6 5 4 37 37 H 1.08999 * 109.46694 * 185.40705 * 9 7 6 38 38 H 1.08994 * 109.47112 * 305.40386 * 9 7 6 39 39 H 1.09002 * 109.47436 * 65.41212 * 9 7 6 40 40 H 1.07998 * 119.99908 * 352.67401 * 13 11 10 41 41 H 1.07998 * 120.00072 * 165.96069 * 14 13 11 42 42 H 1.08004 * 120.05069 * 359.95419 * 16 15 14 43 43 H 1.08003 * 119.94761 * 180.02562 * 17 16 15 44 44 H 0.96997 * 120.00267 * 179.97438 * 23 22 20 45 45 H 1.08001 * 119.95128 * 179.74067 * 28 18 17 46 46 H 1.07997 * 120.05275 * 180.23209 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0516 -0.7384 -1.2432 5 8 1.7173 -2.1247 -1.1399 6 6 2.3218 -2.7912 -0.0291 7 6 1.8190 -2.1588 1.2737 8 1 0.7577 -2.3724 1.3998 9 6 2.6039 -2.7260 2.4583 10 7 2.0257 -0.7040 1.1933 11 6 2.6455 -0.0354 2.1859 12 8 3.1346 -0.6461 3.1183 13 6 2.7304 1.4241 2.1426 14 6 3.2177 2.1037 3.2026 15 6 3.3728 1.4297 4.4994 16 6 2.3733 0.5675 4.9666 17 6 2.5231 -0.0618 6.1811 18 6 3.6660 0.1571 6.9445 19 8 3.8091 -0.4646 8.1406 20 6 2.8697 -1.3714 8.4751 21 1 2.0049 -1.5112 7.8435 22 6 3.0111 -2.1214 9.6335 23 7 4.0641 -1.9513 10.4026 24 14 1.7054 -3.3728 10.1011 25 1 2.0451 -4.6893 9.5038 26 1 1.6484 -3.4999 11.5796 27 1 0.3846 -2.9241 9.5916 28 6 4.6599 1.0170 6.4863 29 6 4.5212 1.6466 5.2706 30 1 -0.3633 0.5053 0.8948 31 1 -0.3634 0.5221 -0.8851 32 1 -0.3633 -1.0276 -0.0097 33 1 3.1342 -0.6288 -1.3075 34 1 1.5895 -0.3181 -2.1364 35 1 3.4054 -2.6891 -0.0889 36 1 2.0542 -3.8477 -0.0478 37 1 2.1809 -2.3476 3.3889 38 1 2.5425 -3.8141 2.4472 39 1 3.6474 -2.4201 2.3827 40 1 2.4034 1.9581 1.2627 41 1 3.4935 3.1426 3.0976 42 1 1.4861 0.3970 4.3749 43 1 1.7528 -0.7273 6.5421 44 1 4.1628 -2.4754 11.2128 45 1 5.5432 1.1872 7.0838 46 1 5.2946 2.3107 4.9141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255121477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:14 Heat of formation + Delta-G solvation = -51.454542 kcal Electronic energy + Delta-G solvation = -29010.648642 eV Core-core repulsion = 25060.126972 eV Total energy + Delta-G solvation = -3950.521670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79695 -40.72603 -39.52672 -38.13163 -36.02232 -35.15323 -34.37301 -33.63725 -31.80699 -31.03646 -29.46960 -28.07651 -27.37011 -26.63491 -25.06885 -23.63937 -23.18546 -22.78831 -21.22094 -19.89433 -19.27349 -18.82619 -18.18433 -17.45913 -17.12624 -16.50350 -16.39585 -16.24333 -16.14631 -15.98407 -15.67871 -15.54697 -15.20270 -14.79348 -14.41875 -14.23692 -14.12665 -13.92977 -13.84785 -13.59439 -13.52359 -13.34645 -13.01684 -12.84405 -12.67460 -12.59756 -12.45412 -12.38416 -12.17975 -12.12613 -12.01195 -11.60458 -11.24265 -11.11317 -10.89878 -10.36729 -10.11814 -9.63123 -9.35002 -8.55710 -8.50427 -6.17376 -0.03546 0.70611 1.11468 1.30441 1.42281 1.48288 1.95401 2.14680 2.44436 2.83559 2.85217 3.20378 3.52119 3.63839 3.67305 3.83990 3.96889 3.99059 4.06789 4.12749 4.14856 4.19988 4.27303 4.43721 4.54404 4.56619 4.64533 4.67726 4.71895 4.76590 4.78254 4.90902 4.96605 5.03819 5.05505 5.09050 5.19521 5.27778 5.34677 5.35880 5.42928 5.63692 5.67403 5.71997 5.85155 6.00669 6.09723 6.23950 6.52516 6.93475 7.38820 7.74786 8.72168 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.003300 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.657190 B = 8481.560177 C = 9719.185866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 H 0.127 0.873 4 C 0.048 3.952 5 O -0.388 6.388 6 C 0.058 3.942 7 C 0.114 3.886 8 H 0.076 0.924 9 C -0.124 4.124 10 N -0.611 5.611 11 C 0.529 3.471 12 O -0.549 6.549 13 C -0.241 4.241 14 C 0.010 3.990 15 C -0.158 4.158 16 C 0.010 3.990 17 C -0.254 4.254 18 C 0.128 3.872 19 O -0.228 6.228 20 C -0.415 4.415 21 H 0.095 0.905 22 C -0.021 4.021 23 N -0.918 5.918 24 Si 1.017 2.983 25 H -0.264 1.264 26 H -0.265 1.265 27 H -0.255 1.255 28 C -0.220 4.220 29 C -0.044 4.044 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.133 0.867 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.274 0.726 45 H 0.113 0.887 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 6.168 -27.163 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 H 0.144 0.856 4 C -0.029 4.029 5 O -0.306 6.306 6 C -0.019 4.019 7 C 0.011 3.989 8 H 0.094 0.906 9 C -0.182 4.182 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.429 6.429 13 C -0.262 4.262 14 C -0.009 4.009 15 C -0.158 4.158 16 C -0.008 4.008 17 C -0.273 4.273 18 C 0.077 3.923 19 O -0.135 6.135 20 C -0.491 4.491 21 H 0.113 0.887 22 C -0.218 4.218 23 N -0.556 5.556 24 Si 0.836 3.164 25 H -0.189 1.189 26 H -0.190 1.190 27 H -0.179 1.179 28 C -0.239 4.239 29 C -0.062 4.062 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.624 5.682 -26.444 27.847 hybrid contribution -0.167 -0.861 1.129 1.429 sum -6.792 4.821 -25.315 26.650 Atomic orbital electron populations 1.22031 0.93628 1.02408 1.03174 1.22433 0.95900 0.98295 0.84124 0.85565 1.23306 1.00234 0.81107 0.98245 1.87935 1.72180 1.23176 1.47318 1.23043 0.96995 0.97706 0.84197 1.21854 1.00042 0.80532 0.96494 0.90570 1.21911 1.00347 0.99008 0.96889 1.48372 1.58096 1.07517 1.20592 1.19054 0.77778 0.89711 0.81269 1.91060 1.47292 1.69568 1.34989 1.23150 1.09001 0.91838 1.02163 1.22594 0.89314 0.99939 0.89028 1.18852 0.96438 1.03460 0.97083 1.20713 0.97430 0.90974 0.91702 1.20965 0.99534 1.07991 0.98821 1.20043 0.94353 0.92383 0.85534 1.83866 1.49034 1.49919 1.30635 1.21782 1.01895 1.16188 1.09196 0.88728 1.26588 1.00546 0.99900 0.94790 1.70154 1.29801 1.41302 1.14319 0.84616 0.76740 0.76792 0.78223 1.18878 1.18959 1.17860 1.20306 0.99473 1.04263 0.99900 1.21118 0.96937 0.96912 0.91222 0.92889 0.88792 0.93220 0.92530 0.84903 0.93077 0.86477 0.93611 0.92505 0.93166 0.81344 0.81223 0.87382 0.87554 0.91681 0.86866 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.25 71.98 0.67 -1.18 16 2 C 0.09 1.23 3.11 45.11 0.14 1.37 16 3 H 0.13 1.02 5.50 -2.39 -0.01 1.00 16 4 C 0.05 0.57 6.38 72.22 0.46 1.03 16 5 O -0.39 -6.73 10.37 -148.98 -1.54 -8.27 16 6 C 0.06 1.06 6.29 72.08 0.45 1.52 16 7 C 0.11 2.58 3.28 44.97 0.15 2.73 16 8 H 0.08 1.70 7.65 -2.39 -0.02 1.68 16 9 C -0.12 -3.63 7.62 71.98 0.55 -3.09 16 10 N -0.61 -13.04 2.71 -774.21 -2.10 -15.14 16 11 C 0.53 14.25 6.49 86.33 0.56 14.81 16 12 O -0.55 -20.19 7.98 -4.42 -0.04 -20.22 16 13 C -0.24 -4.79 9.18 23.61 0.22 -4.57 16 14 C 0.01 0.23 9.80 23.82 0.23 0.47 16 15 C -0.16 -5.34 4.52 -20.13 -0.09 -5.44 16 16 C 0.01 0.41 6.70 22.55 0.15 0.56 16 17 C -0.25 -12.45 9.14 22.35 0.20 -12.24 16 18 C 0.13 6.90 6.66 22.72 0.15 7.05 16 19 O -0.23 -14.58 9.74 -20.23 -0.20 -14.78 16 20 C -0.41 -25.64 9.48 67.94 0.64 -24.99 16 21 H 0.10 5.51 5.18 -2.91 -0.02 5.50 16 22 C -0.02 -1.22 5.49 84.86 0.47 -0.75 16 23 N -0.92 -58.15 13.67 21.62 0.30 -57.85 16 24 Si 1.02 44.90 29.55 68.60 2.03 46.92 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.25 -10.54 7.11 99.48 0.71 -9.84 16 28 C -0.22 -10.10 9.97 22.34 0.22 -9.87 16 29 C -0.04 -1.58 9.78 22.55 0.22 -1.35 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.76 7.21 -2.39 -0.02 0.74 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.66 6.76 -2.39 -0.02 1.65 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.68 6.81 -2.39 -0.02 1.66 16 40 H 0.17 1.78 5.96 -2.91 -0.02 1.77 16 41 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.11 3.99 7.04 -2.91 -0.02 3.97 16 43 H 0.11 5.42 5.62 -2.91 -0.02 5.40 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 46 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -81.95 365.72 4.84 -77.11 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.99 Total: 26.19 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 5.40 Total: -33.96 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.80 Total: -72.99 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.78 Total: -43.27 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -81.95 4.84 -77.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255121477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.656 kcal (2) G-P(sol) polarization free energy of solvation -81.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds