Wall clock time and date at job start Tue Mar 31 2020 17:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49928 * 2 1 4 4 C 1.53035 * 109.52801 * 239.91331 * 2 1 3 5 5 C 1.53043 * 109.54060 * 178.66877 * 4 2 1 6 6 C 1.52762 * 109.37911 * 61.23956 * 5 4 2 7 7 N 1.46924 * 109.01309 * 305.58814 * 6 5 4 8 8 C 1.34781 * 120.63288 * 233.58907 * 7 6 5 9 9 O 1.21277 * 119.99652 * 179.71750 * 8 7 6 10 10 C 1.50701 * 119.99663 * 359.44024 * 8 7 6 11 11 O 1.45198 * 109.46953 * 180.27518 * 10 8 7 12 12 C 1.34770 * 117.00071 * 179.97438 * 11 10 8 13 13 O 1.21507 * 119.99867 * 0.02562 * 12 11 10 14 14 C 1.47515 * 120.00112 * 180.02562 * 12 11 10 15 15 C 1.40069 * 119.89955 * 359.72681 * 14 12 11 16 16 C 1.36295 * 120.10204 * 179.75930 * 15 14 12 17 17 C 1.40903 * 119.89674 * 0.51568 * 16 15 14 18 18 C 1.41089 * 120.09793 * 179.71889 * 17 16 15 19 19 H 1.08004 * 119.99928 * 204.67079 * 18 17 16 20 20 C 1.40248 * 120.00248 * 24.67150 * 18 17 16 21 21 N 1.30630 * 119.99922 * 17.86743 * 20 18 17 22 22 Si 1.86797 * 119.99871 * 197.87011 * 20 18 17 23 23 H 1.48503 * 109.47405 * 59.99884 * 22 20 18 24 24 H 1.48505 * 109.46838 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46997 * 299.99851 * 22 20 18 26 26 C 1.40901 * 119.80075 * 359.74018 * 17 16 15 27 27 C 1.36302 * 119.89928 * 359.97438 * 26 17 16 28 28 C 1.46926 * 118.73794 * 53.30630 * 7 6 5 29 29 H 1.09002 * 109.47524 * 299.94263 * 1 2 3 30 30 H 1.09005 * 109.46869 * 59.93691 * 1 2 3 31 31 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46031 * 298.69169 * 4 2 1 33 33 H 1.08996 * 109.46114 * 58.64953 * 4 2 1 34 34 H 1.08995 * 109.49812 * 181.31433 * 5 4 2 35 35 H 1.09000 * 109.49847 * 301.38517 * 5 4 2 36 36 H 1.09007 * 109.51060 * 185.70718 * 6 5 4 37 37 H 1.09002 * 109.43641 * 65.43118 * 6 5 4 38 38 H 1.08996 * 109.47084 * 300.27605 * 10 8 7 39 39 H 1.08995 * 109.47107 * 60.28050 * 10 8 7 40 40 H 1.08001 * 119.94960 * 0.02562 * 15 14 12 41 41 H 1.07997 * 120.05571 * 180.28046 * 16 15 14 42 42 H 0.96998 * 120.00356 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.04958 * 180.02562 * 26 17 16 44 44 H 1.07997 * 119.94784 * 180.02562 * 27 26 17 45 45 H 1.09008 * 109.57938 * 66.43614 * 28 7 6 46 46 H 1.08998 * 109.58710 * 186.85397 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2480 5 6 3.5716 -0.6943 -1.2652 6 6 4.1061 -1.4204 -0.0320 7 7 3.5046 -0.8280 1.1704 8 6 4.2806 -0.3839 2.1790 9 8 3.7721 0.1077 3.1641 10 6 5.7799 -0.5040 2.0851 11 8 6.3850 0.0353 3.2898 12 6 7.7301 0.0029 3.3661 13 8 8.3795 -0.4629 2.4508 14 6 8.4141 0.5329 4.5608 15 6 7.6637 1.0745 5.6122 16 6 8.2911 1.5609 6.7201 17 6 9.6974 1.5281 6.8021 18 6 10.3515 2.0358 7.9445 19 1 11.3719 2.3825 7.8730 20 6 9.6768 2.0904 9.1728 21 7 8.6007 1.3737 9.3592 22 14 10.3169 3.1880 10.5420 23 1 10.3334 4.5988 10.0788 24 1 9.4314 3.0672 11.7280 25 1 11.6944 2.7709 10.9076 26 6 10.4484 0.9872 5.7397 27 6 9.8122 0.4978 4.6381 28 6 2.0412 -0.7233 1.2499 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6979 -1.7574 -1.2349 33 1 1.6590 -0.2248 -2.1388 34 1 3.9346 -1.1890 -2.1660 35 1 3.9162 0.3397 -1.2539 36 1 5.1901 -1.3143 0.0116 37 1 3.8424 -2.4764 -0.0902 38 1 6.0544 -1.5535 1.9792 39 1 6.1356 0.0538 1.2189 40 1 6.5861 1.1029 5.5468 41 1 7.7116 1.9742 7.5323 42 1 8.1338 1.4116 10.2086 43 1 11.5264 0.9597 5.7985 44 1 10.3870 0.0826 3.8235 45 1 1.6056 -1.7214 1.2984 46 1 1.7632 -0.1574 2.1391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270325201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:11 Heat of formation + Delta-G solvation = -118.661694 kcal Electronic energy + Delta-G solvation = -27389.788810 eV Core-core repulsion = 23436.352819 eV Total energy + Delta-G solvation = -3953.435991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52476 -39.48591 -37.84698 -37.33385 -35.54117 -34.19444 -33.94077 -32.18632 -30.49361 -29.49054 -29.13277 -26.90699 -26.11799 -25.18037 -22.65595 -22.39823 -20.96189 -20.71220 -19.98485 -19.28390 -17.55751 -17.53151 -16.71668 -16.32807 -16.29346 -15.75019 -15.37276 -15.13087 -14.87434 -14.76040 -14.07301 -13.95350 -13.73549 -13.41592 -13.36433 -13.03877 -12.91425 -12.61639 -12.41448 -12.31453 -12.16945 -12.08272 -11.81897 -11.49080 -11.40832 -11.28168 -11.20726 -11.07984 -11.01672 -10.74909 -10.69878 -10.32471 -10.15685 -9.82269 -9.60952 -9.45173 -9.35556 -8.88131 -7.73574 -7.63181 -7.08250 -4.66773 2.04617 2.44489 2.50213 2.88460 2.93457 2.96417 3.05683 3.50268 3.61309 3.71623 4.23857 4.35058 4.44302 4.47374 4.54559 4.61330 4.87003 5.01228 5.11020 5.14623 5.16642 5.23228 5.31330 5.37258 5.41735 5.49633 5.53367 5.60770 5.70706 5.75922 5.82002 5.88249 6.00816 6.23371 6.26272 6.29680 6.75224 6.82947 6.94531 7.00352 7.10212 7.13323 7.43415 7.67561 7.79215 7.85847 8.01654 8.04812 8.37035 8.57384 8.68432 8.71187 9.82826 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002149 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.536752 B =13025.169231 C =14033.493684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.103 3.897 7 N -0.615 5.615 8 C 0.519 3.481 9 O -0.511 6.511 10 C 0.052 3.948 11 O -0.336 6.336 12 C 0.516 3.484 13 O -0.554 6.554 14 C -0.275 4.275 15 C -0.040 4.040 16 C -0.185 4.185 17 C 0.132 3.868 18 C -0.433 4.433 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.761 5.761 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.261 1.261 26 C -0.240 4.240 27 C -0.017 4.017 28 C 0.118 3.882 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.290 0.710 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -3.856 -15.713 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.176 4.176 6 C -0.020 4.020 7 N -0.351 5.351 8 C 0.306 3.694 9 O -0.385 6.385 10 C -0.026 4.026 11 O -0.253 6.253 12 C 0.369 3.631 13 O -0.449 6.449 14 C -0.278 4.278 15 C -0.059 4.059 16 C -0.205 4.205 17 C 0.128 3.872 18 C -0.460 4.460 19 H 0.105 0.895 20 C -0.151 4.151 21 N -0.384 5.384 22 Si 0.740 3.260 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.259 4.259 27 C -0.035 4.035 28 C -0.004 4.004 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.958 -3.801 -15.220 20.347 hybrid contribution 0.221 0.207 0.340 0.455 sum -12.737 -3.595 -14.881 19.914 Atomic orbital electron populations 1.21760 0.94257 1.02069 1.02190 1.21527 0.96064 1.00312 0.94892 0.90644 1.21588 0.95085 1.00873 0.97645 1.21866 0.96307 1.01725 0.97658 1.21742 0.98638 0.97466 0.84189 1.48000 1.06752 1.62197 1.18199 1.20259 0.88549 0.77890 0.82731 1.90747 1.74927 1.42498 1.30324 1.22463 0.90138 1.01042 0.88964 1.86699 1.23654 1.75632 1.39286 1.21692 0.78700 0.75298 0.87444 1.90687 1.66240 1.47323 1.40640 1.18154 0.92836 1.21408 0.95351 1.20713 0.98128 0.94535 0.92538 1.21020 0.94810 1.06642 0.97983 1.17860 0.92248 0.85725 0.91354 1.19902 1.00183 1.33379 0.92537 0.89473 1.26175 0.94066 0.94165 1.00674 1.69733 1.14375 1.28514 1.25750 0.86211 0.79904 0.81073 0.78830 1.18351 1.19936 1.18575 1.20669 0.98277 1.09947 0.97013 1.20332 0.92033 0.94865 0.96307 1.21665 0.78762 1.00856 0.99160 0.92240 0.92295 0.92455 0.91647 0.91557 0.90335 0.91251 0.89456 0.90899 0.88810 0.88856 0.87722 0.86007 0.89864 0.88035 0.87925 0.91418 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.82 2.87 -90.50 -0.26 -1.08 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.69 5.17 -26.69 -0.14 -0.83 16 5 C -0.14 -0.87 6.07 -26.83 -0.16 -1.04 16 6 C 0.10 0.80 6.31 -3.93 -0.02 0.77 16 7 N -0.61 -6.79 2.98 -173.02 -0.52 -7.31 16 8 C 0.52 7.90 7.78 -10.98 -0.09 7.81 16 9 O -0.51 -9.95 15.91 -14.10 -0.22 -10.18 16 10 C 0.05 0.81 4.30 36.01 0.15 0.96 16 11 O -0.34 -6.97 8.98 -47.37 -0.43 -7.39 16 12 C 0.52 11.62 7.89 34.51 0.27 11.89 16 13 O -0.55 -12.67 16.11 -19.27 -0.31 -12.98 16 14 C -0.27 -6.64 5.89 -104.75 -0.62 -7.26 16 15 C -0.04 -0.99 9.55 -39.59 -0.38 -1.36 16 16 C -0.19 -4.75 8.64 -39.27 -0.34 -5.09 16 17 C 0.13 3.38 5.58 -106.80 -0.60 2.79 16 18 C -0.43 -10.71 9.04 -37.75 -0.34 -11.05 16 19 H 0.09 2.02 7.91 -52.48 -0.42 1.61 16 20 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 21 N -0.76 -18.45 10.95 55.56 0.61 -17.84 16 22 Si 0.92 17.20 29.60 -169.99 -5.03 12.17 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 26 C -0.24 -5.78 9.73 -39.27 -0.38 -6.16 16 27 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 28 C 0.12 1.13 5.72 -3.71 -0.02 1.11 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.66 5.94 -51.93 -0.31 0.35 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.29 7.95 -51.93 -0.41 0.88 16 39 H 0.09 1.28 7.68 -51.93 -0.40 0.88 16 40 H 0.10 2.46 7.59 -52.49 -0.40 2.06 16 41 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 42 H 0.29 6.32 8.29 -40.82 -0.34 5.99 16 43 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 44 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 45 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -30.44 379.86 -10.02 -40.46 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.80 Total: 5.60 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.04 Total: -8.25 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.09 Total: -25.14 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.96 Total: -30.55 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.44 -10.02 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270325201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.206 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds