Wall clock time and date at job start Tue Mar 31 2020 17:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49928 * 2 1 4 4 C 1.53035 * 109.52801 * 239.91331 * 2 1 3 5 5 C 1.53043 * 109.54060 * 178.66877 * 4 2 1 6 6 C 1.52762 * 109.37911 * 61.23956 * 5 4 2 7 7 N 1.46924 * 109.01309 * 305.58814 * 6 5 4 8 8 C 1.34781 * 120.63288 * 233.58907 * 7 6 5 9 9 O 1.21277 * 119.99652 * 179.71750 * 8 7 6 10 10 C 1.50701 * 119.99663 * 359.44024 * 8 7 6 11 11 O 1.45198 * 109.46953 * 180.27518 * 10 8 7 12 12 C 1.34770 * 117.00071 * 179.97438 * 11 10 8 13 13 O 1.21507 * 119.99867 * 0.02562 * 12 11 10 14 14 C 1.47515 * 120.00112 * 180.02562 * 12 11 10 15 15 C 1.40069 * 119.89955 * 359.72681 * 14 12 11 16 16 C 1.36295 * 120.10204 * 179.75930 * 15 14 12 17 17 C 1.40903 * 119.89674 * 0.51568 * 16 15 14 18 18 C 1.41089 * 120.09793 * 179.71889 * 17 16 15 19 19 H 1.08004 * 119.99928 * 204.67079 * 18 17 16 20 20 C 1.40248 * 120.00248 * 24.67150 * 18 17 16 21 21 N 1.30630 * 119.99922 * 17.86743 * 20 18 17 22 22 Si 1.86797 * 119.99871 * 197.87011 * 20 18 17 23 23 H 1.48503 * 109.47405 * 59.99884 * 22 20 18 24 24 H 1.48505 * 109.46838 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46997 * 299.99851 * 22 20 18 26 26 C 1.40901 * 119.80075 * 359.74018 * 17 16 15 27 27 C 1.36302 * 119.89928 * 359.97438 * 26 17 16 28 28 C 1.46926 * 118.73794 * 53.30630 * 7 6 5 29 29 H 1.09002 * 109.47524 * 299.94263 * 1 2 3 30 30 H 1.09005 * 109.46869 * 59.93691 * 1 2 3 31 31 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46031 * 298.69169 * 4 2 1 33 33 H 1.08996 * 109.46114 * 58.64953 * 4 2 1 34 34 H 1.08995 * 109.49812 * 181.31433 * 5 4 2 35 35 H 1.09000 * 109.49847 * 301.38517 * 5 4 2 36 36 H 1.09007 * 109.51060 * 185.70718 * 6 5 4 37 37 H 1.09002 * 109.43641 * 65.43118 * 6 5 4 38 38 H 1.08996 * 109.47084 * 300.27605 * 10 8 7 39 39 H 1.08995 * 109.47107 * 60.28050 * 10 8 7 40 40 H 1.08001 * 119.94960 * 0.02562 * 15 14 12 41 41 H 1.07997 * 120.05571 * 180.28046 * 16 15 14 42 42 H 0.96998 * 120.00356 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.04958 * 180.02562 * 26 17 16 44 44 H 1.07997 * 119.94784 * 180.02562 * 27 26 17 45 45 H 1.09008 * 109.57938 * 66.43614 * 28 7 6 46 46 H 1.08998 * 109.58710 * 186.85397 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 -1.2480 5 6 3.5716 -0.6943 -1.2652 6 6 4.1061 -1.4204 -0.0320 7 7 3.5046 -0.8280 1.1704 8 6 4.2806 -0.3839 2.1790 9 8 3.7721 0.1077 3.1641 10 6 5.7799 -0.5040 2.0851 11 8 6.3850 0.0353 3.2898 12 6 7.7301 0.0029 3.3661 13 8 8.3795 -0.4629 2.4508 14 6 8.4141 0.5329 4.5608 15 6 7.6637 1.0745 5.6122 16 6 8.2911 1.5609 6.7201 17 6 9.6974 1.5281 6.8021 18 6 10.3515 2.0358 7.9445 19 1 11.3719 2.3825 7.8730 20 6 9.6768 2.0904 9.1728 21 7 8.6007 1.3737 9.3592 22 14 10.3169 3.1880 10.5420 23 1 10.3334 4.5988 10.0788 24 1 9.4314 3.0672 11.7280 25 1 11.6944 2.7709 10.9076 26 6 10.4484 0.9872 5.7397 27 6 9.8122 0.4978 4.6381 28 6 2.0412 -0.7233 1.2499 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6979 -1.7574 -1.2349 33 1 1.6590 -0.2248 -2.1388 34 1 3.9346 -1.1890 -2.1660 35 1 3.9162 0.3397 -1.2539 36 1 5.1901 -1.3143 0.0116 37 1 3.8424 -2.4764 -0.0902 38 1 6.0544 -1.5535 1.9792 39 1 6.1356 0.0538 1.2189 40 1 6.5861 1.1029 5.5468 41 1 7.7116 1.9742 7.5323 42 1 8.1338 1.4116 10.2086 43 1 11.5264 0.9597 5.7985 44 1 10.3870 0.0826 3.8235 45 1 1.6056 -1.7214 1.2984 46 1 1.7632 -0.1574 2.1391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270325201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:10 Heat of formation + Delta-G solvation = -132.809064 kcal Electronic energy + Delta-G solvation = -27390.402286 eV Core-core repulsion = 23436.352819 eV Total energy + Delta-G solvation = -3954.049467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72829 -40.96226 -39.31014 -38.70407 -37.20156 -35.76757 -35.01412 -32.84990 -32.30585 -31.39332 -30.38814 -28.03163 -27.37710 -26.15557 -24.13522 -23.28374 -22.85207 -21.81794 -21.42293 -20.20622 -19.41369 -18.96064 -18.10771 -17.72494 -17.68207 -17.23825 -16.72564 -16.23807 -15.81372 -15.73457 -15.37877 -15.25760 -15.03359 -14.76322 -14.53644 -14.27424 -14.09029 -13.94546 -13.79350 -13.62117 -13.45505 -13.23911 -13.01175 -12.88049 -12.71967 -12.68740 -12.40598 -12.04720 -11.87607 -11.86179 -11.83715 -11.68035 -11.44974 -11.35868 -11.32010 -11.14312 -10.94535 -9.78634 -9.65242 -9.55258 -8.86010 -6.56639 0.20551 1.12561 1.26836 1.31755 1.36307 1.41462 1.53026 1.85235 2.14062 2.22596 2.66402 3.25306 3.60856 3.71912 3.82066 3.86161 3.93599 3.97507 4.03975 4.17836 4.27841 4.35112 4.39018 4.41435 4.52682 4.63808 4.76578 4.79735 4.85600 4.89910 4.91567 4.96703 5.07844 5.10241 5.15901 5.19422 5.23925 5.28488 5.29718 5.43576 5.51093 5.54485 5.78748 5.88710 5.95112 6.12777 6.13464 6.47695 6.68293 6.80490 6.89098 6.96867 8.08438 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002149 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.536752 B =13025.169231 C =14033.493684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.093 3.907 7 N -0.603 5.603 8 C 0.516 3.484 9 O -0.567 6.567 10 C 0.047 3.953 11 O -0.353 6.353 12 C 0.523 3.477 13 O -0.559 6.559 14 C -0.293 4.293 15 C -0.042 4.042 16 C -0.205 4.205 17 C 0.104 3.896 18 C -0.455 4.455 19 H 0.097 0.903 20 C 0.032 3.968 21 N -0.792 5.792 22 Si 0.993 3.007 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.252 1.252 26 C -0.248 4.248 27 C -0.018 4.018 28 C 0.113 3.887 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.299 0.701 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.660 -4.485 -17.120 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.337 5.337 8 C 0.303 3.697 9 O -0.446 6.446 10 C -0.030 4.030 11 O -0.269 6.269 12 C 0.375 3.625 13 O -0.454 6.454 14 C -0.295 4.295 15 C -0.061 4.061 16 C -0.224 4.224 17 C 0.101 3.899 18 C -0.481 4.481 19 H 0.115 0.885 20 C -0.188 4.188 21 N -0.414 5.414 22 Si 0.812 3.188 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.176 1.176 26 C -0.267 4.267 27 C -0.037 4.037 28 C -0.009 4.009 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.105 0.895 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.971 -4.466 -16.702 21.614 hybrid contribution 0.116 0.323 0.671 0.754 sum -12.855 -4.143 -16.031 20.962 Atomic orbital electron populations 1.21741 0.93019 1.02873 1.02309 1.21486 0.97045 0.99176 0.94625 0.92480 1.21593 0.94772 1.01515 0.96949 1.21873 0.96542 1.01090 0.97722 1.22099 0.98894 0.98722 0.83141 1.48111 1.07200 1.60388 1.18001 1.20298 0.88607 0.77767 0.82988 1.90725 1.75658 1.45498 1.32710 1.22840 0.90212 1.02358 0.87589 1.86645 1.22613 1.75810 1.41860 1.21320 0.79345 0.75013 0.86801 1.90664 1.66615 1.47516 1.40610 1.18406 0.93442 1.21616 0.96044 1.20745 0.98219 0.94497 0.92617 1.21002 0.95206 1.07978 0.98205 1.18208 0.92485 0.86611 0.92601 1.20256 1.00979 1.33794 0.93096 0.88462 1.27120 0.93944 0.94927 1.02802 1.69775 1.15327 1.29358 1.26968 0.85068 0.79589 0.78644 0.75477 1.18079 1.19022 1.17601 1.20884 0.99162 1.09809 0.96826 1.20519 0.92047 0.94515 0.96593 1.21831 0.77941 1.01815 0.99310 0.93157 0.91193 0.91281 0.90274 0.90320 0.87874 0.92467 0.89104 0.88585 0.86706 0.86786 0.87691 0.87122 0.88914 0.86307 0.86329 0.89487 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.20 71.98 0.66 -0.85 16 2 C -0.10 -1.44 2.87 -10.72 -0.03 -1.47 16 3 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.02 5.17 30.62 0.16 -0.86 16 5 C -0.13 -1.33 6.07 30.53 0.19 -1.15 16 6 C 0.09 1.21 6.31 86.22 0.54 1.75 16 7 N -0.60 -12.81 2.98 -819.71 -2.44 -15.26 16 8 C 0.52 15.89 7.78 87.66 0.68 16.57 16 9 O -0.57 -23.16 15.91 15.78 0.25 -22.91 16 10 C 0.05 1.43 4.30 71.24 0.31 1.74 16 11 O -0.35 -14.81 8.98 -50.42 -0.45 -15.26 16 12 C 0.52 23.58 7.89 70.27 0.55 24.14 16 13 O -0.56 -25.02 16.11 19.81 0.32 -24.70 16 14 C -0.29 -14.35 5.89 -19.94 -0.12 -14.46 16 15 C -0.04 -2.13 9.55 22.26 0.21 -1.92 16 16 C -0.20 -10.89 8.64 22.47 0.19 -10.69 16 17 C 0.10 5.48 5.58 -21.28 -0.12 5.36 16 18 C -0.46 -22.67 9.04 23.46 0.21 -22.45 16 19 H 0.10 4.49 7.91 -2.91 -0.02 4.47 16 20 C 0.03 1.50 5.14 85.36 0.44 1.94 16 21 N -0.79 -38.86 10.95 21.88 0.24 -38.62 16 22 Si 0.99 34.55 29.60 68.60 2.03 36.58 16 23 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 24 H -0.27 -8.80 7.11 99.48 0.71 -8.10 16 25 H -0.25 -8.37 7.11 99.48 0.71 -7.67 16 26 C -0.25 -12.02 9.73 22.47 0.22 -11.80 16 27 C -0.02 -0.86 9.52 22.26 0.21 -0.65 16 28 C 0.11 2.12 5.72 86.36 0.49 2.61 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 1.14 5.94 -2.38 -0.01 1.12 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 3.00 7.95 -2.39 -0.02 2.98 16 39 H 0.11 2.98 7.68 -2.39 -0.02 2.96 16 40 H 0.10 5.19 7.59 -2.91 -0.02 5.17 16 41 H 0.11 6.01 6.15 -2.91 -0.02 5.99 16 42 H 0.30 13.13 8.29 -92.71 -0.77 12.36 16 43 H 0.12 5.20 8.06 -2.91 -0.02 5.18 16 44 H 0.12 5.15 7.63 -2.91 -0.02 5.13 16 45 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.07 1.64 7.00 -2.39 -0.02 1.63 16 Total: -1.00 -67.66 379.86 5.73 -61.92 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.98 Total: 30.44 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.81 Total: -12.20 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -2.20 Total: -53.87 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: 0.12 Total: -62.87 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -67.66 5.73 -61.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270325201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.885 kcal (2) G-P(sol) polarization free energy of solvation -67.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds