Wall clock time and date at job start Tue Mar 31 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49941 * 2 1 4 4 C 1.53048 * 109.49316 * 120.06057 * 2 1 3 5 5 C 1.53045 * 109.53451 * 181.35313 * 4 2 1 6 6 C 1.53193 * 109.30973 * 298.63364 * 5 4 2 7 7 N 1.46925 * 108.77687 * 54.64045 * 6 5 4 8 8 C 1.34768 * 120.63007 * 126.36959 * 7 6 5 9 9 O 1.21289 * 119.99907 * 180.02562 * 8 7 6 10 10 C 1.50701 * 120.00166 * 359.97438 * 8 7 6 11 11 O 1.45207 * 109.46978 * 180.02562 * 10 8 7 12 12 C 1.34771 * 116.99870 * 180.02562 * 11 10 8 13 13 O 1.21510 * 120.00276 * 359.97438 * 12 11 10 14 14 C 1.47513 * 120.00174 * 180.02562 * 12 11 10 15 15 C 1.40068 * 119.90282 * 180.02562 * 14 12 11 16 16 C 1.36292 * 120.10093 * 179.97438 * 15 14 12 17 17 C 1.40897 * 119.89926 * 359.97438 * 16 15 14 18 18 C 1.41089 * 120.09946 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99994 * 154.41715 * 18 17 16 20 20 C 1.40249 * 120.00145 * 334.41782 * 18 17 16 21 21 N 1.30628 * 119.99436 * 334.65524 * 20 18 17 22 22 Si 1.86798 * 120.00007 * 154.37999 * 20 18 17 23 23 H 1.48500 * 109.47198 * 90.00093 * 22 20 18 24 24 H 1.48501 * 109.47016 * 209.99952 * 22 20 18 25 25 H 1.48497 * 109.47407 * 330.00092 * 22 20 18 26 26 C 1.40904 * 119.80344 * 0.24909 * 17 16 15 27 27 C 1.36296 * 119.89287 * 359.51102 * 26 17 16 28 28 C 1.46924 * 118.73600 * 306.63593 * 7 6 5 29 29 H 1.08998 * 109.47473 * 299.93989 * 1 2 3 30 30 H 1.09004 * 109.46729 * 59.94370 * 1 2 3 31 31 H 1.09005 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46108 * 61.33030 * 4 2 1 33 33 H 1.09001 * 109.46016 * 301.36674 * 4 2 1 34 34 H 1.09003 * 109.49425 * 178.68582 * 5 4 2 35 35 H 1.08994 * 109.50112 * 58.58543 * 5 4 2 36 36 H 1.09001 * 109.58595 * 294.84820 * 6 5 4 37 37 H 1.09001 * 109.70318 * 174.49535 * 6 5 4 38 38 H 1.09001 * 109.47106 * 60.00746 * 10 8 7 39 39 H 1.08994 * 109.47185 * 299.99923 * 10 8 7 40 40 H 1.07998 * 119.94395 * 0.02562 * 15 14 12 41 41 H 1.08006 * 120.05322 * 179.97438 * 16 15 14 42 42 H 0.96993 * 120.00692 * 353.95581 * 21 20 18 43 43 H 1.07998 * 120.05278 * 179.72499 * 26 17 16 44 44 H 1.08002 * 119.94700 * 180.22590 * 27 26 17 45 45 H 1.09003 * 109.58702 * 173.14223 * 28 7 6 46 46 H 1.08993 * 109.59251 * 293.57467 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 1.2487 5 6 3.5707 -0.6938 1.2668 6 6 4.1059 -1.4255 0.0319 7 7 3.5053 -0.8283 -1.1688 8 6 4.2820 -0.3847 -2.1768 9 8 3.7741 0.1068 -3.1626 10 6 5.7815 -0.4981 -2.0789 11 8 6.3876 0.0459 -3.2810 12 6 7.7332 0.0198 -3.3535 13 8 8.3821 -0.4445 -2.4371 14 6 8.4182 0.5558 -4.5449 15 6 9.8167 0.5270 -4.6183 16 6 10.4538 1.0207 -5.7173 17 6 9.7034 1.5600 -6.7810 18 6 10.3586 2.0727 -7.9205 19 1 9.8467 2.1000 -8.8711 20 6 11.6746 2.5468 -7.8188 21 7 12.1257 2.9807 -6.6723 22 14 12.7847 2.5505 -9.3212 23 1 12.6392 3.8412 -10.0410 24 1 14.1965 2.3785 -8.8939 25 1 12.4011 1.4348 -10.2229 26 6 8.2970 1.5912 -6.7008 27 6 7.6682 1.0908 -5.5999 28 6 2.0423 -0.7187 -1.2469 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6971 -1.7570 1.2357 33 1 1.6576 -0.2241 2.1391 34 1 3.9332 -1.1883 2.1681 35 1 3.9153 0.3401 1.2549 36 1 3.8386 -2.4807 0.0879 37 1 5.1903 -1.3251 -0.0135 38 1 6.0605 -1.5465 -1.9735 39 1 6.1322 0.0603 -1.2110 40 1 10.3909 0.1123 -3.8030 41 1 11.5322 0.9985 -5.7729 42 1 11.5268 3.0575 -5.9131 43 1 7.7181 2.0077 -7.5118 44 1 6.5901 1.1109 -5.5391 45 1 1.7653 -0.1498 -2.1345 46 1 1.6033 -1.7150 -1.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270325203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:16 Heat of formation + Delta-G solvation = -125.062792 kcal Electronic energy + Delta-G solvation = -27363.107127 eV Core-core repulsion = 23409.393564 eV Total energy + Delta-G solvation = -3953.713563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57980 -39.56269 -37.94613 -37.54365 -35.61783 -34.24990 -34.15747 -32.20880 -30.26992 -29.83364 -29.02404 -26.91773 -26.01452 -25.20851 -22.69612 -22.46838 -21.17773 -20.74828 -20.06337 -19.33533 -18.19758 -17.63146 -16.77503 -16.41169 -16.37328 -15.72070 -15.22907 -14.93498 -14.79724 -14.68231 -14.30904 -14.03579 -13.80926 -13.74360 -13.45891 -13.09491 -12.88303 -12.67104 -12.48633 -12.38462 -12.22629 -12.17655 -11.98549 -11.52752 -11.49116 -11.24755 -11.16346 -11.11281 -11.04761 -10.77998 -10.55280 -10.39509 -10.01620 -9.90524 -9.70578 -9.57323 -9.25899 -8.93087 -7.98286 -7.84304 -7.50487 -4.78406 1.95945 2.38201 2.44685 2.85394 2.97410 3.04119 3.22775 3.43433 3.54169 3.79844 4.19567 4.31455 4.39351 4.41237 4.49846 4.57393 4.83242 4.97378 5.07020 5.09975 5.10922 5.19730 5.27623 5.32533 5.34012 5.38114 5.45824 5.57343 5.67353 5.72900 5.77187 5.80892 5.97426 6.07220 6.14272 6.22226 6.61550 6.77915 6.82686 6.92460 7.07631 7.17354 7.39586 7.49311 7.57220 7.66371 7.89243 7.98715 8.05040 8.44719 8.55713 8.60660 9.69460 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.001990 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.698950 B =14064.962028 C =14614.327328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.102 3.898 7 N -0.614 5.614 8 C 0.519 3.481 9 O -0.513 6.513 10 C 0.052 3.948 11 O -0.337 6.337 12 C 0.516 3.484 13 O -0.552 6.552 14 C -0.285 4.285 15 C -0.011 4.011 16 C -0.237 4.237 17 C 0.110 3.890 18 C -0.481 4.481 19 H 0.086 0.914 20 C 0.033 3.967 21 N -0.766 5.766 22 Si 1.070 2.930 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.239 4.239 27 C -0.019 4.019 28 C 0.118 3.882 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.306 0.694 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 -6.400 13.292 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.021 4.021 7 N -0.351 5.351 8 C 0.306 3.694 9 O -0.387 6.387 10 C -0.026 4.026 11 O -0.254 6.254 12 C 0.369 3.631 13 O -0.446 6.446 14 C -0.287 4.287 15 C -0.030 4.030 16 C -0.256 4.256 17 C 0.106 3.894 18 C -0.506 4.506 19 H 0.104 0.896 20 C -0.192 4.192 21 N -0.387 5.387 22 Si 0.892 3.108 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.258 4.258 27 C -0.038 4.038 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.233 -5.907 12.556 19.878 hybrid contribution -1.591 -0.453 0.965 1.915 sum -15.824 -6.360 13.521 21.764 Atomic orbital electron populations 1.21757 0.94199 1.02082 1.02212 1.21453 0.96106 1.00357 0.94913 0.90659 1.21592 0.95082 1.00879 0.97649 1.21938 0.96289 1.01682 0.97623 1.21840 0.98655 0.97401 0.84184 1.47993 1.06781 1.61994 1.18298 1.20245 0.88518 0.77861 0.82749 1.90742 1.74997 1.42630 1.30330 1.22473 0.90127 1.01022 0.88984 1.86683 1.23583 1.75610 1.39557 1.21623 0.78717 0.75456 0.87352 1.90699 1.66253 1.47327 1.40355 1.18089 0.92797 1.22236 0.95576 1.20376 0.91978 0.94241 0.96425 1.20825 0.99155 1.08938 0.96645 1.17891 0.91937 0.87842 0.91755 1.20988 0.99546 1.33113 0.96993 0.89587 1.27367 0.97429 0.91592 1.02846 1.70349 1.41259 1.24127 1.02956 0.83565 0.75902 0.78089 0.73230 1.19828 1.19422 1.19616 1.20691 0.94396 1.11144 0.99573 1.20646 0.98101 0.92613 0.92391 1.21570 0.78747 1.00902 0.99195 0.92264 0.92238 0.92445 0.91634 0.91520 0.90330 0.91217 0.90847 0.89448 0.88782 0.88792 0.87758 0.87033 0.87953 0.88054 0.87475 0.88785 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.79 2.86 -90.72 -0.26 -1.05 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.67 5.17 -26.68 -0.14 -0.81 16 5 C -0.14 -0.85 6.08 -26.61 -0.16 -1.01 16 6 C 0.10 0.77 6.34 -3.71 -0.02 0.74 16 7 N -0.61 -6.58 2.98 -173.03 -0.52 -7.09 16 8 C 0.52 7.68 7.78 -10.99 -0.09 7.60 16 9 O -0.51 -9.70 15.92 -14.11 -0.22 -9.92 16 10 C 0.05 0.79 4.30 36.01 0.15 0.94 16 11 O -0.34 -6.82 8.98 -47.37 -0.43 -7.24 16 12 C 0.52 11.46 7.89 34.51 0.27 11.74 16 13 O -0.55 -12.61 16.11 -19.27 -0.31 -12.92 16 14 C -0.28 -6.76 5.89 -104.75 -0.62 -7.38 16 15 C -0.01 -0.27 9.52 -39.60 -0.38 -0.65 16 16 C -0.24 -5.91 7.89 -39.28 -0.31 -6.22 16 17 C 0.11 2.78 5.30 -106.80 -0.57 2.22 16 18 C -0.48 -11.89 8.98 -37.75 -0.34 -12.22 16 19 H 0.09 2.03 7.97 -52.49 -0.42 1.61 16 20 C 0.03 0.78 4.94 -17.31 -0.09 0.70 16 21 N -0.77 -19.00 12.29 55.56 0.68 -18.31 16 22 Si 1.07 19.81 30.01 -169.99 -5.10 14.71 16 23 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 26 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 27 C -0.02 -0.44 9.55 -39.60 -0.38 -0.82 16 28 C 0.12 1.10 5.69 -3.93 -0.02 1.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.64 5.93 -51.93 -0.31 0.33 16 38 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 40 H 0.10 2.39 7.63 -52.49 -0.40 1.99 16 41 H 0.11 2.80 6.48 -52.48 -0.34 2.46 16 42 H 0.31 7.85 6.70 -40.82 -0.27 7.57 16 43 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.11 2.35 7.59 -52.49 -0.40 1.95 16 45 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -30.22 379.10 -9.92 -40.14 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.76 Total: 6.73 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.98 Total: -11.79 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.17 Total: -25.41 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.96 Total: -30.09 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.10 Total: 14.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.22 -9.92 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270325203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.923 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds