Wall clock time and date at job start Tue Mar 31 2020 17:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.49941 * 2 1 4 4 C 1.53048 * 109.49316 * 120.06057 * 2 1 3 5 5 C 1.53045 * 109.53451 * 181.35313 * 4 2 1 6 6 C 1.53193 * 109.30973 * 298.63364 * 5 4 2 7 7 N 1.46925 * 108.77687 * 54.64045 * 6 5 4 8 8 C 1.34768 * 120.63007 * 126.36959 * 7 6 5 9 9 O 1.21289 * 119.99907 * 180.02562 * 8 7 6 10 10 C 1.50701 * 120.00166 * 359.97438 * 8 7 6 11 11 O 1.45207 * 109.46978 * 180.02562 * 10 8 7 12 12 C 1.34771 * 116.99870 * 180.02562 * 11 10 8 13 13 O 1.21510 * 120.00276 * 359.97438 * 12 11 10 14 14 C 1.47513 * 120.00174 * 180.02562 * 12 11 10 15 15 C 1.40068 * 119.90282 * 180.02562 * 14 12 11 16 16 C 1.36292 * 120.10093 * 179.97438 * 15 14 12 17 17 C 1.40897 * 119.89926 * 359.97438 * 16 15 14 18 18 C 1.41089 * 120.09946 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99994 * 154.41715 * 18 17 16 20 20 C 1.40249 * 120.00145 * 334.41782 * 18 17 16 21 21 N 1.30628 * 119.99436 * 334.65524 * 20 18 17 22 22 Si 1.86798 * 120.00007 * 154.37999 * 20 18 17 23 23 H 1.48500 * 109.47198 * 90.00093 * 22 20 18 24 24 H 1.48501 * 109.47016 * 209.99952 * 22 20 18 25 25 H 1.48497 * 109.47407 * 330.00092 * 22 20 18 26 26 C 1.40904 * 119.80344 * 0.24909 * 17 16 15 27 27 C 1.36296 * 119.89287 * 359.51102 * 26 17 16 28 28 C 1.46924 * 118.73600 * 306.63593 * 7 6 5 29 29 H 1.08998 * 109.47473 * 299.93989 * 1 2 3 30 30 H 1.09004 * 109.46729 * 59.94370 * 1 2 3 31 31 H 1.09005 * 109.47478 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46108 * 61.33030 * 4 2 1 33 33 H 1.09001 * 109.46016 * 301.36674 * 4 2 1 34 34 H 1.09003 * 109.49425 * 178.68582 * 5 4 2 35 35 H 1.08994 * 109.50112 * 58.58543 * 5 4 2 36 36 H 1.09001 * 109.58595 * 294.84820 * 6 5 4 37 37 H 1.09001 * 109.70318 * 174.49535 * 6 5 4 38 38 H 1.09001 * 109.47106 * 60.00746 * 10 8 7 39 39 H 1.08994 * 109.47185 * 299.99923 * 10 8 7 40 40 H 1.07998 * 119.94395 * 0.02562 * 15 14 12 41 41 H 1.08006 * 120.05322 * 179.97438 * 16 15 14 42 42 H 0.96993 * 120.00692 * 353.95581 * 21 20 18 43 43 H 1.07998 * 120.05278 * 179.72499 * 26 17 16 44 44 H 1.08002 * 119.94700 * 180.22590 * 27 26 17 45 45 H 1.09003 * 109.58702 * 173.14223 * 28 7 6 46 46 H 1.08993 * 109.59251 * 293.57467 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 1.2487 5 6 3.5707 -0.6938 1.2668 6 6 4.1059 -1.4255 0.0319 7 7 3.5053 -0.8283 -1.1688 8 6 4.2820 -0.3847 -2.1768 9 8 3.7741 0.1068 -3.1626 10 6 5.7815 -0.4981 -2.0789 11 8 6.3876 0.0459 -3.2810 12 6 7.7332 0.0198 -3.3535 13 8 8.3821 -0.4445 -2.4371 14 6 8.4182 0.5558 -4.5449 15 6 9.8167 0.5270 -4.6183 16 6 10.4538 1.0207 -5.7173 17 6 9.7034 1.5600 -6.7810 18 6 10.3586 2.0727 -7.9205 19 1 9.8467 2.1000 -8.8711 20 6 11.6746 2.5468 -7.8188 21 7 12.1257 2.9807 -6.6723 22 14 12.7847 2.5505 -9.3212 23 1 12.6392 3.8412 -10.0410 24 1 14.1965 2.3785 -8.8939 25 1 12.4011 1.4348 -10.2229 26 6 8.2970 1.5912 -6.7008 27 6 7.6682 1.0908 -5.5999 28 6 2.0423 -0.7187 -1.2469 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6971 -1.7570 1.2357 33 1 1.6576 -0.2241 2.1391 34 1 3.9332 -1.1883 2.1681 35 1 3.9153 0.3401 1.2549 36 1 3.8386 -2.4807 0.0879 37 1 5.1903 -1.3251 -0.0135 38 1 6.0605 -1.5465 -1.9735 39 1 6.1322 0.0603 -1.2110 40 1 10.3909 0.1123 -3.8030 41 1 11.5322 0.9985 -5.7729 42 1 11.5268 3.0575 -5.9131 43 1 7.7181 2.0077 -7.5118 44 1 6.5901 1.1109 -5.5391 45 1 1.7653 -0.1498 -2.1345 46 1 1.6033 -1.7150 -1.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270325203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:15 Heat of formation + Delta-G solvation = -138.825671 kcal Electronic energy + Delta-G solvation = -27363.703931 eV Core-core repulsion = 23409.393564 eV Total energy + Delta-G solvation = -3954.310366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77070 -41.01949 -39.55326 -38.74032 -37.26325 -36.00837 -35.03681 -32.84752 -32.08706 -31.65239 -30.32125 -27.92084 -27.37158 -26.17825 -24.20790 -23.30078 -23.05283 -21.87416 -21.45176 -20.22836 -20.04756 -19.07038 -18.12091 -17.77619 -17.73359 -16.92646 -16.50581 -16.26777 -16.00612 -15.79254 -15.47022 -15.38832 -15.11628 -14.79104 -14.51728 -14.38635 -14.23898 -14.08208 -13.83058 -13.72965 -13.50660 -13.23109 -13.03104 -12.93251 -12.73554 -12.69179 -12.06415 -11.99653 -11.91011 -11.86741 -11.75456 -11.69861 -11.62711 -11.41447 -11.33656 -11.02505 -10.97230 -9.89694 -9.80348 -9.76069 -9.38998 -6.71007 0.10958 0.92878 1.21762 1.29822 1.42502 1.52562 1.81271 1.84245 2.18085 2.25848 2.59198 3.22628 3.40289 3.70417 3.81220 3.84303 3.90894 3.94672 4.01557 4.09480 4.18544 4.26505 4.27295 4.37597 4.51088 4.63062 4.70639 4.75244 4.78245 4.84245 4.88100 4.90350 4.95023 5.06626 5.14421 5.18683 5.24220 5.27568 5.28522 5.41603 5.48383 5.50096 5.58080 5.67344 5.76008 5.99296 6.11409 6.13781 6.54577 6.66673 6.84074 6.92318 7.79019 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.001990 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.698950 B =14064.962028 C =14614.327328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 H 0.056 0.944 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.093 3.907 7 N -0.602 5.602 8 C 0.517 3.483 9 O -0.566 6.566 10 C 0.046 3.954 11 O -0.350 6.350 12 C 0.524 3.476 13 O -0.559 6.559 14 C -0.297 4.297 15 C -0.015 4.015 16 C -0.247 4.247 17 C 0.087 3.913 18 C -0.502 4.502 19 H 0.092 0.908 20 C 0.002 3.998 21 N -0.782 5.782 22 Si 1.122 2.878 23 H -0.255 1.255 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.250 4.250 27 C -0.017 4.017 28 C 0.113 3.887 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.291 0.709 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.464 -7.538 14.502 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.337 5.337 8 C 0.305 3.695 9 O -0.445 6.445 10 C -0.030 4.030 11 O -0.266 6.266 12 C 0.376 3.624 13 O -0.454 6.454 14 C -0.299 4.299 15 C -0.034 4.034 16 C -0.266 4.266 17 C 0.083 3.917 18 C -0.528 4.528 19 H 0.110 0.890 20 C -0.218 4.218 21 N -0.403 5.403 22 Si 0.937 3.063 23 H -0.179 1.179 24 H -0.193 1.193 25 H -0.184 1.184 26 C -0.269 4.269 27 C -0.035 4.035 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.086 0.914 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.051 -7.066 13.837 21.631 hybrid contribution -1.509 -0.166 0.755 1.695 sum -16.559 -7.232 14.593 23.226 Atomic orbital electron populations 1.21737 0.92956 1.02892 1.02328 1.21414 0.97090 0.99210 0.94683 0.92527 1.21597 0.94725 1.01542 0.96985 1.21945 0.96570 1.01003 0.97721 1.22185 0.98869 0.98657 0.83160 1.48102 1.07245 1.60234 1.18070 1.20246 0.88492 0.77780 0.83023 1.90721 1.75670 1.45500 1.32591 1.22852 0.90291 1.02325 0.87567 1.86623 1.22268 1.75711 1.42018 1.21252 0.79462 0.75059 0.86636 1.90682 1.66755 1.47558 1.40453 1.18347 0.92967 1.22065 0.96521 1.20486 0.92459 0.94071 0.96364 1.20795 0.98801 1.09758 0.97263 1.18206 0.92740 0.88457 0.92314 1.21251 1.00653 1.33790 0.97063 0.88968 1.28804 0.98448 0.89938 1.04634 1.70458 1.40843 1.25764 1.03220 0.82952 0.74000 0.79242 0.70108 1.17939 1.19262 1.18386 1.20884 0.94192 1.11505 1.00312 1.20772 0.98695 0.92048 0.92023 1.21733 0.77892 1.01875 0.99313 0.91261 0.93071 0.91257 0.90238 0.90387 0.87993 0.92504 0.88508 0.89169 0.86649 0.86959 0.86992 0.87860 0.89574 0.86861 0.86263 0.91424 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.20 71.98 0.66 -0.75 16 2 C -0.10 -1.37 2.86 -10.86 -0.03 -1.40 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -0.97 5.17 30.63 0.16 -0.81 16 5 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 6 C 0.09 1.14 6.34 86.36 0.55 1.69 16 7 N -0.60 -12.15 2.98 -819.74 -2.44 -14.59 16 8 C 0.52 15.16 7.78 87.66 0.68 15.85 16 9 O -0.57 -21.98 15.92 15.74 0.25 -21.73 16 10 C 0.05 1.36 4.30 71.24 0.31 1.67 16 11 O -0.35 -14.01 8.98 -50.43 -0.45 -14.46 16 12 C 0.52 23.06 7.89 70.27 0.55 23.61 16 13 O -0.56 -25.02 16.11 19.80 0.32 -24.70 16 14 C -0.30 -14.18 5.89 -19.94 -0.12 -14.29 16 15 C -0.02 -0.74 9.52 22.26 0.21 -0.52 16 16 C -0.25 -12.64 7.89 22.47 0.18 -12.46 16 17 C 0.09 4.48 5.30 -21.28 -0.11 4.37 16 18 C -0.50 -25.06 8.98 23.46 0.21 -24.85 16 19 H 0.09 4.36 7.97 -2.91 -0.02 4.34 16 20 C 0.00 0.11 4.94 85.36 0.42 0.53 16 21 N -0.78 -39.39 12.29 21.88 0.27 -39.12 16 22 Si 1.12 38.97 30.01 68.60 2.06 41.03 16 23 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 24 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 25 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 26 C -0.25 -12.17 9.73 22.47 0.22 -11.95 16 27 C -0.02 -0.79 9.55 22.26 0.21 -0.58 16 28 C 0.11 2.01 5.69 86.22 0.49 2.50 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.08 5.93 -2.39 -0.01 1.07 16 38 H 0.12 2.88 7.93 -2.39 -0.02 2.86 16 39 H 0.11 2.86 7.69 -2.39 -0.02 2.85 16 40 H 0.11 5.19 7.63 -2.91 -0.02 5.17 16 41 H 0.10 5.37 6.48 -2.91 -0.02 5.35 16 42 H 0.29 15.41 6.70 -92.71 -0.62 14.79 16 43 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 44 H 0.12 5.24 7.59 -2.91 -0.02 5.22 16 45 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.54 379.10 5.91 -60.63 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 1.13 Total: 31.45 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.78 Total: -18.50 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -2.17 Total: -53.71 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: 0.12 Total: -60.90 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.06 Total: 41.03 kcal Total: -66.54 5.91 -60.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270325203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.195 kcal (2) G-P(sol) polarization free energy of solvation -66.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds