Wall clock time and date at job start Tue Mar 31 2020 17:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.48877 * 2 1 4 4 C 1.53095 * 109.48184 * 120.02447 * 2 1 3 5 5 C 1.53177 * 109.16410 * 177.59489 * 4 2 1 6 6 H 1.08997 * 109.54294 * 62.97702 * 5 4 2 7 7 N 1.46499 * 109.54310 * 183.15747 * 5 4 2 8 8 C 1.34777 * 119.99734 * 204.82026 * 7 5 4 9 9 O 1.21717 * 119.99846 * 0.02562 * 8 7 5 10 10 C 1.46257 * 119.99849 * 179.97438 * 8 7 5 11 11 C 1.35024 * 119.99697 * 179.97438 * 10 8 7 12 12 C 1.46969 * 119.99515 * 180.02562 * 11 10 8 13 13 C 1.40020 * 120.09440 * 180.02562 * 12 11 10 14 14 C 1.37599 * 119.89103 * 180.27434 * 13 12 11 15 15 C 1.39175 * 120.10458 * 359.49708 * 14 13 12 16 16 O 1.35571 * 119.90222 * 180.25381 * 15 14 13 17 17 C 1.34781 * 117.00450 * 174.69402 * 16 15 14 18 18 H 1.08001 * 119.99492 * 5.06063 * 17 16 15 19 19 C 1.38715 * 120.00124 * 185.05433 * 17 16 15 20 20 N 1.31503 * 119.99916 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47235 * 120.00332 * 21 19 17 24 24 H 1.48502 * 109.47201 * 240.00189 * 21 19 17 25 25 C 1.39178 * 120.20006 * 0.50578 * 15 14 13 26 26 C 1.37596 * 120.10381 * 359.74593 * 25 15 14 27 27 C 1.53186 * 109.10757 * 303.06554 * 5 4 2 28 28 C 1.53099 * 109.15685 * 56.84638 * 27 5 4 29 29 O 1.42901 * 109.48127 * 239.97174 * 2 1 3 30 30 H 1.09003 * 109.47436 * 299.97001 * 1 2 3 31 31 H 1.09002 * 109.47164 * 59.97332 * 1 2 3 32 32 H 1.09001 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.51912 * 57.68844 * 4 2 1 34 34 H 1.08999 * 109.57306 * 297.53474 * 4 2 1 35 35 H 0.97003 * 119.99954 * 24.81602 * 7 5 4 36 36 H 1.07995 * 119.99944 * 0.02562 * 10 8 7 37 37 H 1.07995 * 120.00358 * 0.02562 * 11 10 8 38 38 H 1.08000 * 120.05824 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.94415 * 179.72827 * 14 13 12 40 40 H 0.97002 * 119.99436 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.94854 * 179.72960 * 25 15 14 42 42 H 1.07994 * 120.05176 * 179.97438 * 26 25 15 43 43 H 1.09001 * 109.52274 * 176.84199 * 27 5 4 44 44 H 1.09001 * 109.52299 * 297.02894 * 27 5 4 45 45 H 1.09003 * 109.48270 * 182.49345 * 28 27 5 46 46 H 1.09004 * 109.40834 * 62.50863 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2123 6 1 3.9689 0.2436 1.2425 7 7 4.0658 -1.5258 2.3661 8 6 5.3091 -1.3014 2.8354 9 8 6.0208 -0.4712 2.3008 10 6 5.8028 -2.0549 3.9877 11 6 7.0486 -1.8304 4.4575 12 6 7.5449 -2.5879 5.6150 13 6 8.8363 -2.3565 6.1043 14 6 9.2987 -3.0721 7.1848 15 6 8.4813 -4.0172 7.7976 16 8 8.9392 -4.7163 8.8651 17 6 8.0641 -5.5357 9.4811 18 1 7.0746 -5.6750 9.0715 19 6 8.4346 -6.2001 10.6411 20 7 9.6393 -6.0301 11.1400 21 14 7.2219 -7.3362 11.4944 22 1 5.9440 -7.3541 10.7382 23 1 7.7845 -8.7094 11.5492 24 1 6.9730 -6.8479 12.8746 25 6 7.1970 -4.2506 7.3147 26 6 6.7279 -3.5435 6.2316 27 6 4.0196 -1.4587 -0.0808 28 6 3.4307 -0.7093 -1.2790 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3634 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6443 -1.7374 1.2710 34 1 1.7148 -0.1852 2.1404 35 1 3.4985 -2.1872 2.7923 36 1 5.1712 -2.7912 4.4622 37 1 7.6804 -1.0944 3.9827 38 1 9.4698 -1.6204 5.6319 39 1 10.2962 -2.8974 7.5601 40 1 9.8982 -6.4945 11.9514 41 1 6.5677 -4.9881 7.7907 42 1 5.7314 -3.7255 5.8573 43 1 5.1079 -1.4470 -0.1412 44 1 3.6646 -2.4893 -0.0871 45 1 3.7101 -1.2203 -2.2004 46 1 3.8192 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271297655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:27 Heat of formation + Delta-G solvation = -82.735242 kcal Electronic energy + Delta-G solvation = -26491.591540 eV Core-core repulsion = 22539.713437 eV Total energy + Delta-G solvation = -3951.878103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35753 -39.28510 -38.93530 -36.92243 -35.38994 -33.27163 -33.18923 -32.35706 -31.67014 -30.39046 -28.50478 -27.86812 -25.64382 -24.58325 -23.46812 -22.49753 -21.97456 -20.83711 -20.68078 -19.11313 -18.23128 -17.61276 -16.78589 -16.70644 -16.57155 -15.80091 -15.25191 -14.95539 -14.80717 -14.59344 -14.50447 -14.17102 -13.92704 -13.86858 -13.80442 -13.53698 -12.94786 -12.92406 -12.73001 -12.48900 -12.27998 -12.07011 -11.86107 -11.75961 -11.71051 -11.49329 -11.31217 -11.16704 -11.04612 -10.77371 -10.72523 -10.55935 -10.14464 -9.68751 -9.63100 -9.50305 -9.18603 -8.87656 -8.40339 -7.13675 -6.67388 -4.22227 1.04470 2.11567 2.53040 3.01378 3.02524 3.08324 3.10240 3.38900 3.54205 3.79873 4.25526 4.43890 4.45625 4.49439 4.71839 4.79595 4.83730 4.90743 4.99584 5.05853 5.08756 5.12421 5.18417 5.23730 5.28700 5.40468 5.52478 5.52945 5.58378 5.61468 5.66361 5.73559 5.75060 5.90218 6.00631 6.06209 6.33011 6.46984 6.49768 6.57130 6.74652 6.85351 6.92687 7.08961 7.21152 7.26875 7.51419 7.61927 7.78001 8.30509 8.77407 9.44569 10.49302 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.001762 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.339219 B =15884.141706 C =16873.024037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.146 3.854 6 H 0.087 0.913 7 N -0.730 5.730 8 C 0.557 3.443 9 O -0.559 6.559 10 C -0.285 4.285 11 C 0.040 3.960 12 C -0.200 4.200 13 C -0.040 4.040 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.243 4.243 26 C -0.038 4.038 27 C -0.167 4.167 28 C 0.065 3.935 29 O -0.380 6.380 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 8.588 -18.200 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.196 4.196 5 C 0.041 3.959 6 H 0.105 0.895 7 N -0.380 5.380 8 C 0.350 3.650 9 O -0.440 6.440 10 C -0.306 4.306 11 C 0.020 3.980 12 C -0.201 4.201 13 C -0.058 4.058 14 C -0.218 4.218 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.262 4.262 26 C -0.056 4.056 27 C -0.206 4.206 28 C -0.012 4.012 29 O -0.300 6.300 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.115 0.885 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.381 8.976 -18.353 24.984 hybrid contribution -0.667 -0.929 0.921 1.469 sum -15.048 8.046 -17.432 24.394 Atomic orbital electron populations 1.21767 0.92726 1.03098 1.02600 1.22036 0.95274 0.95066 0.84468 0.92144 1.22543 0.94811 1.02812 0.99438 1.20882 0.93101 0.96671 0.85289 0.89466 1.45920 1.16258 1.42950 1.32899 1.18435 0.80830 0.82183 0.83597 1.90764 1.56597 1.35718 1.60886 1.22435 0.99313 1.07366 1.01476 1.22288 0.93623 0.91934 0.90183 1.18464 0.96343 1.04369 1.00886 1.20875 0.94046 0.96756 0.94167 1.20158 1.00943 1.00437 1.00276 1.19616 0.91764 0.89661 0.87910 1.83905 1.38426 1.48334 1.35653 1.21520 0.95957 1.22109 1.07250 0.88498 1.25401 0.97367 0.97947 0.95790 1.70022 1.17962 1.39785 1.20592 0.85581 0.79278 0.79046 0.79183 1.18881 1.19906 1.19902 1.21096 0.97624 1.06167 1.01309 1.20993 0.97773 0.93199 0.93611 1.22628 1.02343 1.00758 0.94872 1.22544 0.80572 0.99841 0.98246 1.87936 1.21204 1.77932 1.42895 0.90953 0.91673 0.91689 0.90362 0.90119 0.76580 0.85941 0.85911 0.86370 0.86047 0.91625 0.85169 0.86854 0.90078 0.90831 0.88508 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.56 37.16 0.36 -0.47 16 2 C 0.09 0.65 3.26 -26.68 -0.09 0.56 16 3 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.16 -1.12 4.89 -26.59 -0.13 -1.25 16 5 C 0.15 1.36 2.54 -67.74 -0.17 1.19 16 6 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 7 N -0.73 -7.44 5.08 -55.07 -0.28 -7.72 16 8 C 0.56 7.65 7.70 -13.04 -0.10 7.55 16 9 O -0.56 -9.50 15.90 5.17 0.08 -9.42 16 10 C -0.28 -3.86 9.41 -37.50 -0.35 -4.22 16 11 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 12 C -0.20 -3.37 5.87 -105.02 -0.62 -3.99 16 13 C -0.04 -0.69 9.78 -39.15 -0.38 -1.07 16 14 C -0.20 -3.98 9.97 -39.47 -0.39 -4.38 16 15 C 0.17 3.82 6.66 -38.88 -0.26 3.56 16 16 O -0.16 -4.38 9.74 0.74 0.01 -4.38 16 17 C -0.39 -10.36 9.48 30.91 0.29 -10.06 16 18 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 21 Si 0.95 19.34 29.55 -169.99 -5.02 14.31 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.24 -4.95 9.14 -39.47 -0.36 -5.31 16 26 C -0.04 -0.65 9.40 -39.15 -0.37 -1.02 16 27 C -0.17 -1.52 5.72 -26.58 -0.15 -1.67 16 28 C 0.07 0.52 6.84 37.21 0.25 0.78 16 29 O -0.38 -3.44 10.41 -35.23 -0.37 -3.80 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.14 8.58 -40.82 -0.35 2.79 16 36 H 0.12 1.45 6.06 -52.49 -0.32 1.13 16 37 H 0.12 1.82 7.52 -52.49 -0.39 1.42 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 2.62 5.62 -52.49 -0.29 2.33 16 42 H 0.11 1.63 6.16 -52.49 -0.32 1.31 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -30.94 383.41 -8.52 -39.46 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.56 Total: 7.27 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -2.92 Total: -18.57 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.48 Total: -30.66 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.28 Total: -17.60 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.94 -8.52 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.273 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds