Wall clock time and date at job start Tue Mar 31 2020 17:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.48877 * 2 1 4 4 C 1.53095 * 109.48184 * 120.02447 * 2 1 3 5 5 C 1.53177 * 109.16410 * 177.59489 * 4 2 1 6 6 H 1.08997 * 109.54294 * 62.97702 * 5 4 2 7 7 N 1.46499 * 109.54310 * 183.15747 * 5 4 2 8 8 C 1.34777 * 119.99734 * 204.82026 * 7 5 4 9 9 O 1.21717 * 119.99846 * 0.02562 * 8 7 5 10 10 C 1.46257 * 119.99849 * 179.97438 * 8 7 5 11 11 C 1.35024 * 119.99697 * 179.97438 * 10 8 7 12 12 C 1.46969 * 119.99515 * 180.02562 * 11 10 8 13 13 C 1.40020 * 120.09440 * 180.02562 * 12 11 10 14 14 C 1.37599 * 119.89103 * 180.27434 * 13 12 11 15 15 C 1.39175 * 120.10458 * 359.49708 * 14 13 12 16 16 O 1.35571 * 119.90222 * 180.25381 * 15 14 13 17 17 C 1.34781 * 117.00450 * 174.69402 * 16 15 14 18 18 H 1.08001 * 119.99492 * 5.06063 * 17 16 15 19 19 C 1.38715 * 120.00124 * 185.05433 * 17 16 15 20 20 N 1.31503 * 119.99916 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99793 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47235 * 120.00332 * 21 19 17 24 24 H 1.48502 * 109.47201 * 240.00189 * 21 19 17 25 25 C 1.39178 * 120.20006 * 0.50578 * 15 14 13 26 26 C 1.37596 * 120.10381 * 359.74593 * 25 15 14 27 27 C 1.53186 * 109.10757 * 303.06554 * 5 4 2 28 28 C 1.53099 * 109.15685 * 56.84638 * 27 5 4 29 29 O 1.42901 * 109.48127 * 239.97174 * 2 1 3 30 30 H 1.09003 * 109.47436 * 299.97001 * 1 2 3 31 31 H 1.09002 * 109.47164 * 59.97332 * 1 2 3 32 32 H 1.09001 * 109.46691 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.51912 * 57.68844 * 4 2 1 34 34 H 1.08999 * 109.57306 * 297.53474 * 4 2 1 35 35 H 0.97003 * 119.99954 * 24.81602 * 7 5 4 36 36 H 1.07995 * 119.99944 * 0.02562 * 10 8 7 37 37 H 1.07995 * 120.00358 * 0.02562 * 11 10 8 38 38 H 1.08000 * 120.05824 * 0.02562 * 13 12 11 39 39 H 1.08008 * 119.94415 * 179.72827 * 14 13 12 40 40 H 0.97002 * 119.99436 * 179.97438 * 20 19 17 41 41 H 1.08000 * 119.94854 * 179.72960 * 25 15 14 42 42 H 1.07994 * 120.05176 * 179.97438 * 26 25 15 43 43 H 1.09001 * 109.52274 * 176.84199 * 27 5 4 44 44 H 1.09001 * 109.52299 * 297.02894 * 27 5 4 45 45 H 1.09003 * 109.48270 * 182.49345 * 28 27 5 46 46 H 1.09004 * 109.40834 * 62.50863 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2123 6 1 3.9689 0.2436 1.2425 7 7 4.0658 -1.5258 2.3661 8 6 5.3091 -1.3014 2.8354 9 8 6.0208 -0.4712 2.3008 10 6 5.8028 -2.0549 3.9877 11 6 7.0486 -1.8304 4.4575 12 6 7.5449 -2.5879 5.6150 13 6 8.8363 -2.3565 6.1043 14 6 9.2987 -3.0721 7.1848 15 6 8.4813 -4.0172 7.7976 16 8 8.9392 -4.7163 8.8651 17 6 8.0641 -5.5357 9.4811 18 1 7.0746 -5.6750 9.0715 19 6 8.4346 -6.2001 10.6411 20 7 9.6393 -6.0301 11.1400 21 14 7.2219 -7.3362 11.4944 22 1 5.9440 -7.3541 10.7382 23 1 7.7845 -8.7094 11.5492 24 1 6.9730 -6.8479 12.8746 25 6 7.1970 -4.2506 7.3147 26 6 6.7279 -3.5435 6.2316 27 6 4.0196 -1.4587 -0.0808 28 6 3.4307 -0.7093 -1.2790 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3634 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6443 -1.7374 1.2710 34 1 1.7148 -0.1852 2.1404 35 1 3.4985 -2.1872 2.7923 36 1 5.1712 -2.7912 4.4622 37 1 7.6804 -1.0944 3.9827 38 1 9.4698 -1.6204 5.6319 39 1 10.2962 -2.8974 7.5601 40 1 9.8982 -6.4945 11.9514 41 1 6.5677 -4.9881 7.7907 42 1 5.7314 -3.7255 5.8573 43 1 5.1079 -1.4470 -0.1412 44 1 3.6646 -2.4893 -0.0871 45 1 3.7101 -1.2203 -2.2004 46 1 3.8192 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271297655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:26 Heat of formation + Delta-G solvation = -102.094095 kcal Electronic energy + Delta-G solvation = -26492.431003 eV Core-core repulsion = 22539.713437 eV Total energy + Delta-G solvation = -3952.717566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22963 -40.82409 -39.91701 -38.49594 -36.29441 -34.76313 -34.01845 -33.74968 -32.58193 -31.90862 -29.82111 -28.57850 -27.40849 -25.52577 -24.46203 -23.75028 -23.12433 -21.86167 -21.56801 -20.27394 -19.94441 -19.10861 -18.10701 -17.46016 -17.29796 -16.64242 -16.47375 -16.14560 -16.10626 -15.94905 -15.62578 -15.55304 -15.35499 -15.04801 -14.84693 -14.52152 -14.36985 -14.00180 -13.63424 -13.49702 -13.32813 -13.16992 -13.14481 -12.86226 -12.73404 -12.51037 -12.47144 -12.29539 -12.09581 -12.08840 -11.97534 -11.45920 -11.19816 -11.12748 -11.05479 -10.58819 -10.52851 -10.08993 -9.89737 -8.68742 -8.52186 -6.18445 -0.25492 0.58120 1.12666 1.36220 1.45656 1.54456 2.15162 2.19381 2.35331 2.81163 2.86426 3.17544 3.42780 3.60974 3.76786 3.78056 3.89172 3.90228 4.05736 4.09454 4.18916 4.25624 4.35452 4.38140 4.47024 4.48607 4.50321 4.61657 4.69773 4.74801 4.82693 4.96175 4.97295 5.01334 5.03055 5.06533 5.15906 5.20366 5.29760 5.32182 5.32868 5.48917 5.58345 5.63011 5.81181 5.97371 6.10171 6.25806 6.58605 6.92167 7.26761 7.69681 8.70238 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.001762 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.339219 B =15884.141706 C =16873.024037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.083 3.917 3 H 0.061 0.939 4 C -0.148 4.148 5 C 0.143 3.857 6 H 0.070 0.930 7 N -0.712 5.712 8 C 0.552 3.448 9 O -0.592 6.592 10 C -0.249 4.249 11 C 0.017 3.983 12 C -0.172 4.172 13 C -0.039 4.039 14 C -0.209 4.209 15 C 0.130 3.870 16 O -0.221 6.221 17 C -0.416 4.416 18 H 0.108 0.892 19 C -0.021 4.021 20 N -0.915 5.915 21 Si 1.020 2.980 22 H -0.248 1.248 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.247 4.247 26 C -0.038 4.038 27 C -0.162 4.162 28 C 0.066 3.934 29 O -0.394 6.394 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.274 0.726 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 9.299 -20.634 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.079 0.921 4 C -0.186 4.186 5 C 0.038 3.962 6 H 0.088 0.912 7 N -0.362 5.362 8 C 0.343 3.657 9 O -0.475 6.475 10 C -0.269 4.269 11 C -0.003 4.003 12 C -0.172 4.172 13 C -0.057 4.057 14 C -0.228 4.228 15 C 0.078 3.922 16 O -0.126 6.126 17 C -0.491 4.491 18 H 0.126 0.874 19 C -0.219 4.219 20 N -0.552 5.552 21 Si 0.839 3.161 22 H -0.171 1.171 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.267 4.267 26 C -0.056 4.056 27 C -0.201 4.201 28 C -0.011 4.011 29 O -0.314 6.314 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.252 0.748 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.001 9.711 -20.856 29.212 hybrid contribution 0.244 -0.791 1.130 1.401 sum -17.757 8.920 -19.726 28.000 Atomic orbital electron populations 1.21774 0.91447 1.03295 1.03390 1.22209 0.96294 0.94999 0.83961 0.92058 1.22487 0.92683 1.03546 0.99917 1.20975 0.94696 0.95600 0.84944 0.91218 1.45827 1.15205 1.42582 1.32602 1.18530 0.81631 0.81883 0.83621 1.90770 1.57765 1.37151 1.61850 1.22765 0.98614 1.05676 0.99865 1.22187 0.94725 0.93032 0.90306 1.18787 0.95687 1.02650 1.00113 1.21255 0.94832 0.96573 0.93036 1.20390 1.00915 1.00434 1.01108 1.20178 0.93561 0.90680 0.87819 1.83890 1.39713 1.50897 1.38130 1.21967 0.96587 1.22618 1.07943 0.87428 1.26648 0.99323 0.99606 0.96333 1.70163 1.20544 1.42609 1.21858 0.84506 0.77183 0.76528 0.77879 1.17070 1.19428 1.19444 1.21223 0.96697 1.06541 1.02191 1.21350 0.99466 0.92362 0.92407 1.22555 1.01198 1.01093 0.95245 1.22574 0.80324 0.99947 0.98278 1.87930 1.21447 1.78203 1.43780 0.89371 0.91755 0.91752 0.89500 0.88898 0.74766 0.83339 0.85537 0.83007 0.86290 0.91637 0.85452 0.82986 0.91861 0.90453 0.87368 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.56 71.98 0.69 -0.53 16 2 C 0.08 0.99 3.26 30.63 0.10 1.09 16 3 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 4 C -0.15 -1.61 4.89 30.68 0.15 -1.46 16 5 C 0.14 2.28 2.54 45.11 0.11 2.39 16 6 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 7 N -0.71 -11.85 5.08 -446.34 -2.27 -14.12 16 8 C 0.55 13.19 7.70 86.33 0.67 13.86 16 9 O -0.59 -18.71 15.90 -4.40 -0.07 -18.78 16 10 C -0.25 -5.58 9.41 23.62 0.22 -5.36 16 11 C 0.02 0.45 9.45 23.82 0.23 0.68 16 12 C -0.17 -5.26 5.87 -20.13 -0.12 -5.38 16 13 C -0.04 -1.27 9.78 22.55 0.22 -1.05 16 14 C -0.21 -8.52 9.97 22.34 0.22 -8.30 16 15 C 0.13 6.15 6.66 22.72 0.15 6.30 16 16 O -0.22 -12.77 9.74 -20.28 -0.20 -12.97 16 17 C -0.42 -23.08 9.48 67.93 0.64 -22.43 16 18 H 0.11 5.40 5.18 -2.91 -0.02 5.38 16 19 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 20 N -0.91 -54.34 13.67 21.62 0.30 -54.05 16 21 Si 1.02 40.85 29.55 68.60 2.03 42.88 16 22 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 25 C -0.25 -10.01 9.14 22.34 0.20 -9.80 16 26 C -0.04 -1.21 9.40 22.55 0.21 -1.00 16 27 C -0.16 -2.59 5.72 30.69 0.18 -2.42 16 28 C 0.07 0.93 6.84 72.02 0.49 1.42 16 29 O -0.39 -6.23 10.41 -148.98 -1.55 -7.78 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.42 4.52 8.58 -92.71 -0.80 3.73 16 36 H 0.15 2.57 6.06 -2.91 -0.02 2.56 16 37 H 0.13 3.33 7.52 -2.91 -0.02 3.30 16 38 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.13 5.15 5.62 -2.91 -0.02 5.13 16 42 H 0.15 3.58 6.16 -2.91 -0.02 3.56 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -72.47 383.41 3.28 -69.19 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.21 Total: 28.26 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 4.84 Total: -32.63 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.97 Total: -68.16 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.82 Total: -39.53 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -72.47 3.28 -69.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.909 kcal (2) G-P(sol) polarization free energy of solvation -72.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds