Wall clock time and date at job start Tue Mar 31 2020 17:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.48214 * 2 1 4 4 C 1.53086 * 109.47871 * 239.96736 * 2 1 3 5 5 C 1.53178 * 109.16590 * 182.40883 * 4 2 1 6 6 H 1.09003 * 109.54140 * 297.11527 * 5 4 2 7 7 N 1.46498 * 109.54856 * 176.84731 * 5 4 2 8 8 C 1.34773 * 120.00483 * 155.44146 * 7 5 4 9 9 O 1.21727 * 119.99584 * 0.02562 * 8 7 5 10 10 C 1.46248 * 120.00227 * 179.97438 * 8 7 5 11 11 C 1.35024 * 119.99955 * 180.02562 * 10 8 7 12 12 C 1.46958 * 120.00170 * 180.02562 * 11 10 8 13 13 C 1.40031 * 120.09969 * 359.72616 * 12 11 10 14 14 C 1.37601 * 119.89361 * 179.72221 * 13 12 11 15 15 C 1.39175 * 120.10584 * 0.53411 * 14 13 12 16 16 O 1.35563 * 119.89799 * 179.74301 * 15 14 13 17 17 C 1.34788 * 116.99708 * 174.46822 * 16 15 14 18 18 H 1.07993 * 120.00036 * 5.05181 * 17 16 15 19 19 C 1.38718 * 119.99898 * 185.06023 * 17 16 15 20 20 N 1.31515 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00259 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47157 * 59.99358 * 21 19 17 23 23 H 1.48498 * 109.47498 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47055 * 299.99942 * 21 19 17 25 25 C 1.39180 * 120.20108 * 359.76457 * 15 14 13 26 26 C 1.37599 * 120.10004 * 359.95429 * 25 15 14 27 27 C 1.53183 * 109.03276 * 56.98016 * 5 4 2 28 28 C 1.53094 * 109.16375 * 303.02174 * 27 5 4 29 29 O 1.42896 * 109.41586 * 57.61035 * 28 27 5 30 30 H 1.09002 * 109.46562 * 299.97669 * 1 2 3 31 31 H 1.08995 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 59.96922 * 1 2 3 33 33 H 1.09002 * 109.52309 * 302.31763 * 4 2 1 34 34 H 1.09005 * 109.52370 * 62.50577 * 4 2 1 35 35 H 0.97002 * 119.99625 * 335.44389 * 7 5 4 36 36 H 1.07999 * 120.00053 * 0.02562 * 10 8 7 37 37 H 1.07999 * 119.99993 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.05200 * 359.97438 * 13 12 11 39 39 H 1.08008 * 119.94399 * 180.27717 * 14 13 12 40 40 H 0.96993 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.94985 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.05169 * 179.97438 * 26 25 15 43 43 H 1.09003 * 109.51611 * 183.11438 * 27 5 4 44 44 H 1.09002 * 109.52007 * 62.92790 * 27 5 4 45 45 H 1.08997 * 109.47746 * 297.62394 * 28 27 5 46 46 H 1.08999 * 109.48851 * 177.59656 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 1 3.9689 0.2434 -1.2409 7 7 4.0658 -1.5261 -2.3659 8 6 5.3110 -1.3057 -2.8321 9 8 6.0248 -0.4795 -2.2940 10 6 5.8050 -2.0600 -3.9835 11 6 7.0527 -1.8395 -4.4501 12 6 7.5489 -2.5971 -5.6075 13 6 6.7316 -3.5521 -6.2245 14 6 7.1985 -4.2549 -7.3115 15 6 8.4848 -4.0257 -7.7910 16 8 8.9423 -4.7242 -8.8589 17 6 10.1502 -4.3765 -9.3455 18 1 10.7426 -3.6300 -8.8374 19 6 10.6324 -4.9774 -10.4991 20 7 9.9112 -5.8867 -11.1177 21 14 12.3061 -4.4951 -11.1739 22 1 13.3505 -4.7800 -10.1575 23 1 12.5876 -5.2767 -12.4048 24 1 12.3111 -3.0454 -11.4956 25 6 9.3029 -3.0819 -7.1771 26 6 8.8425 -2.3702 -6.0931 27 6 4.0176 -1.4602 0.0810 28 6 3.4307 -0.7093 1.2791 29 8 2.0066 -0.6742 1.1665 30 1 -0.3632 0.5135 0.8902 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5143 -0.8897 33 1 1.6442 -1.7375 -1.2708 34 1 1.7149 -0.1844 -2.1398 35 1 3.4970 -2.1848 -2.7945 36 1 5.1718 -2.7934 -4.4606 37 1 7.6860 -1.1065 -3.9728 38 1 5.7349 -3.7339 -5.8504 39 1 6.5671 -4.9886 -7.7908 40 1 10.2485 -6.3071 -11.9240 41 1 10.3005 -2.9076 -7.5522 42 1 9.4782 -1.6383 -5.6171 43 1 5.1059 -1.4499 0.1420 44 1 3.6612 -2.4903 0.0865 45 1 3.8193 0.3089 1.2958 46 1 3.7099 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271297659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:35 Heat of formation + Delta-G solvation = -82.581826 kcal Electronic energy + Delta-G solvation = -26420.136687 eV Core-core repulsion = 22468.265237 eV Total energy + Delta-G solvation = -3951.871450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35863 -39.28205 -38.93547 -36.92639 -35.38879 -33.24339 -33.18903 -32.36314 -31.66795 -30.44811 -28.44653 -27.83510 -25.73255 -24.58410 -23.42385 -22.40315 -22.03274 -20.83730 -20.65497 -19.31740 -18.18829 -17.17108 -17.12416 -16.70287 -16.53396 -15.77274 -15.28140 -15.02347 -14.83048 -14.63824 -14.49272 -14.15684 -13.99434 -13.85720 -13.69626 -13.32910 -13.05002 -12.93592 -12.73122 -12.61132 -12.28032 -11.95486 -11.85472 -11.76842 -11.72933 -11.49569 -11.30837 -11.12154 -11.10140 -10.77215 -10.71893 -10.56135 -10.14022 -9.68184 -9.62560 -9.51923 -9.18443 -8.86646 -8.40267 -7.13569 -6.66668 -4.21674 1.04485 2.11653 2.53376 3.02988 3.04516 3.07035 3.10192 3.38880 3.54292 3.80983 4.25401 4.43905 4.45653 4.49607 4.71864 4.79684 4.83692 4.90722 4.99588 5.02564 5.08711 5.12227 5.23540 5.25217 5.28659 5.40477 5.50641 5.53214 5.58298 5.61422 5.64838 5.73433 5.74950 5.90114 5.99365 6.09804 6.32840 6.45043 6.47428 6.58990 6.77134 6.85310 6.89869 7.10966 7.21718 7.26091 7.51567 7.61983 7.78447 8.30649 8.77883 9.44570 10.49781 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.039357 B = 0.001604 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.259611 B =17457.403261 C =17859.276603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.146 3.854 6 H 0.087 0.913 7 N -0.729 5.729 8 C 0.557 3.443 9 O -0.559 6.559 10 C -0.285 4.285 11 C 0.040 3.960 12 C -0.200 4.200 13 C -0.043 4.043 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.242 4.242 26 C -0.035 4.035 27 C -0.167 4.167 28 C 0.065 3.935 29 O -0.381 6.381 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.275 0.725 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.339 9.019 18.181 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.078 0.922 4 C -0.196 4.196 5 C 0.041 3.959 6 H 0.105 0.895 7 N -0.380 5.380 8 C 0.349 3.651 9 O -0.440 6.440 10 C -0.306 4.306 11 C 0.020 3.980 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.262 4.262 26 C -0.053 4.053 27 C -0.206 4.206 28 C -0.012 4.012 29 O -0.300 6.300 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.026 9.153 18.302 24.809 hybrid contribution 0.808 -0.091 -0.815 1.151 sum -13.218 9.061 17.487 23.719 Atomic orbital electron populations 1.21767 0.92726 1.03094 1.02600 1.22037 0.95276 0.95066 0.84472 0.92150 1.22544 0.94812 1.02803 0.99438 1.20879 0.93102 0.96657 0.85296 0.89480 1.45913 1.16063 1.43149 1.32884 1.18439 0.80852 0.82152 0.83624 1.90769 1.56561 1.35937 1.60705 1.22425 0.99232 1.07424 1.01513 1.22286 0.93666 0.91882 0.90164 1.18461 0.96330 1.04349 1.00960 1.20881 0.97992 0.93616 0.93596 1.20152 0.94818 1.05986 1.00939 1.19613 0.92179 0.89373 0.87805 1.83902 1.34720 1.49979 1.37647 1.21435 0.92032 1.24377 1.09101 0.88572 1.25396 1.00136 0.95664 0.95229 1.70004 1.37307 1.23378 1.17725 0.85711 0.79761 0.79012 0.78634 1.19248 1.20067 1.19238 1.21100 1.01979 1.02498 1.00582 1.20990 0.93856 0.96310 0.94139 1.22629 1.02362 1.00744 0.94876 1.22543 0.80572 0.99832 0.98253 1.87935 1.21216 1.77930 1.42903 0.91679 0.91688 0.90953 0.90348 0.90122 0.76580 0.85904 0.85962 0.86431 0.86126 0.91526 0.85112 0.86814 0.90097 0.90814 0.92920 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.56 37.16 0.36 -0.45 16 2 C 0.09 0.64 3.26 -26.68 -0.09 0.56 16 3 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 4 C -0.16 -1.10 4.89 -26.59 -0.13 -1.23 16 5 C 0.15 1.35 2.54 -67.75 -0.17 1.18 16 6 H 0.09 0.96 7.59 -51.93 -0.39 0.56 16 7 N -0.73 -7.35 5.08 -55.07 -0.28 -7.63 16 8 C 0.56 7.61 7.70 -13.04 -0.10 7.50 16 9 O -0.56 -9.50 15.90 5.16 0.08 -9.42 16 10 C -0.28 -3.82 9.41 -37.51 -0.35 -4.17 16 11 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.38 5.87 -105.02 -0.62 -4.00 16 13 C -0.04 -0.72 9.40 -39.14 -0.37 -1.09 16 14 C -0.20 -3.97 9.97 -39.47 -0.39 -4.36 16 15 C 0.17 3.81 6.66 -38.88 -0.26 3.56 16 16 O -0.16 -4.37 9.74 0.74 0.01 -4.36 16 17 C -0.39 -10.42 9.48 30.91 0.29 -10.13 16 18 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.71 13.67 55.48 0.76 -22.95 16 21 Si 0.95 19.41 29.55 -169.99 -5.02 14.38 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.24 -4.99 9.14 -39.46 -0.36 -5.35 16 26 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 27 C -0.17 -1.51 5.71 -26.59 -0.15 -1.66 16 28 C 0.07 0.52 6.84 37.21 0.25 0.77 16 29 O -0.38 -3.42 10.41 -35.23 -0.37 -3.78 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 3.06 8.58 -40.82 -0.35 2.71 16 36 H 0.12 1.41 6.07 -52.49 -0.32 1.09 16 37 H 0.12 1.83 7.52 -52.49 -0.39 1.44 16 38 H 0.12 1.61 6.16 -52.49 -0.32 1.29 16 39 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.66 5.62 -52.49 -0.29 2.36 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -30.95 383.42 -8.52 -39.47 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.56 Total: 7.12 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.92 Total: -18.62 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.48 Total: -30.57 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.28 Total: -17.56 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.95 -8.52 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.110 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds