Wall clock time and date at job start Tue Mar 31 2020 17:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.48214 * 2 1 4 4 C 1.53086 * 109.47871 * 239.96736 * 2 1 3 5 5 C 1.53178 * 109.16590 * 182.40883 * 4 2 1 6 6 H 1.09003 * 109.54140 * 297.11527 * 5 4 2 7 7 N 1.46498 * 109.54856 * 176.84731 * 5 4 2 8 8 C 1.34773 * 120.00483 * 155.44146 * 7 5 4 9 9 O 1.21727 * 119.99584 * 0.02562 * 8 7 5 10 10 C 1.46248 * 120.00227 * 179.97438 * 8 7 5 11 11 C 1.35024 * 119.99955 * 180.02562 * 10 8 7 12 12 C 1.46958 * 120.00170 * 180.02562 * 11 10 8 13 13 C 1.40031 * 120.09969 * 359.72616 * 12 11 10 14 14 C 1.37601 * 119.89361 * 179.72221 * 13 12 11 15 15 C 1.39175 * 120.10584 * 0.53411 * 14 13 12 16 16 O 1.35563 * 119.89799 * 179.74301 * 15 14 13 17 17 C 1.34788 * 116.99708 * 174.46822 * 16 15 14 18 18 H 1.07993 * 120.00036 * 5.05181 * 17 16 15 19 19 C 1.38718 * 119.99898 * 185.06023 * 17 16 15 20 20 N 1.31515 * 120.00091 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00259 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47157 * 59.99358 * 21 19 17 23 23 H 1.48498 * 109.47498 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47055 * 299.99942 * 21 19 17 25 25 C 1.39180 * 120.20108 * 359.76457 * 15 14 13 26 26 C 1.37599 * 120.10004 * 359.95429 * 25 15 14 27 27 C 1.53183 * 109.03276 * 56.98016 * 5 4 2 28 28 C 1.53094 * 109.16375 * 303.02174 * 27 5 4 29 29 O 1.42896 * 109.41586 * 57.61035 * 28 27 5 30 30 H 1.09002 * 109.46562 * 299.97669 * 1 2 3 31 31 H 1.08995 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 59.96922 * 1 2 3 33 33 H 1.09002 * 109.52309 * 302.31763 * 4 2 1 34 34 H 1.09005 * 109.52370 * 62.50577 * 4 2 1 35 35 H 0.97002 * 119.99625 * 335.44389 * 7 5 4 36 36 H 1.07999 * 120.00053 * 0.02562 * 10 8 7 37 37 H 1.07999 * 119.99993 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.05200 * 359.97438 * 13 12 11 39 39 H 1.08008 * 119.94399 * 180.27717 * 14 13 12 40 40 H 0.96993 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.07995 * 119.94985 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.05169 * 179.97438 * 26 25 15 43 43 H 1.09003 * 109.51611 * 183.11438 * 27 5 4 44 44 H 1.09002 * 109.52007 * 62.92790 * 27 5 4 45 45 H 1.08997 * 109.47746 * 297.62394 * 28 27 5 46 46 H 1.08999 * 109.48851 * 177.59656 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 1 3.9689 0.2434 -1.2409 7 7 4.0658 -1.5261 -2.3659 8 6 5.3110 -1.3057 -2.8321 9 8 6.0248 -0.4795 -2.2940 10 6 5.8050 -2.0600 -3.9835 11 6 7.0527 -1.8395 -4.4501 12 6 7.5489 -2.5971 -5.6075 13 6 6.7316 -3.5521 -6.2245 14 6 7.1985 -4.2549 -7.3115 15 6 8.4848 -4.0257 -7.7910 16 8 8.9423 -4.7242 -8.8589 17 6 10.1502 -4.3765 -9.3455 18 1 10.7426 -3.6300 -8.8374 19 6 10.6324 -4.9774 -10.4991 20 7 9.9112 -5.8867 -11.1177 21 14 12.3061 -4.4951 -11.1739 22 1 13.3505 -4.7800 -10.1575 23 1 12.5876 -5.2767 -12.4048 24 1 12.3111 -3.0454 -11.4956 25 6 9.3029 -3.0819 -7.1771 26 6 8.8425 -2.3702 -6.0931 27 6 4.0176 -1.4602 0.0810 28 6 3.4307 -0.7093 1.2791 29 8 2.0066 -0.6742 1.1665 30 1 -0.3632 0.5135 0.8902 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5143 -0.8897 33 1 1.6442 -1.7375 -1.2708 34 1 1.7149 -0.1844 -2.1398 35 1 3.4970 -2.1848 -2.7945 36 1 5.1718 -2.7934 -4.4606 37 1 7.6860 -1.1065 -3.9728 38 1 5.7349 -3.7339 -5.8504 39 1 6.5671 -4.9886 -7.7908 40 1 10.2485 -6.3071 -11.9240 41 1 10.3005 -2.9076 -7.5522 42 1 9.4782 -1.6383 -5.6171 43 1 5.1059 -1.4499 0.1420 44 1 3.6612 -2.4903 0.0865 45 1 3.8193 0.3089 1.2958 46 1 3.7099 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271297659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:34 Heat of formation + Delta-G solvation = -101.987085 kcal Electronic energy + Delta-G solvation = -26420.978163 eV Core-core repulsion = 22468.265237 eV Total energy + Delta-G solvation = -3952.712925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22659 -40.82228 -39.91595 -38.49861 -36.29053 -34.74105 -34.02224 -33.74734 -32.57921 -31.96738 -29.73244 -28.56331 -27.50734 -25.50619 -24.40841 -23.74906 -23.10140 -21.85181 -21.56928 -20.60822 -19.73627 -18.84965 -18.28664 -17.40911 -17.29330 -16.64760 -16.48630 -16.32531 -16.06834 -15.93676 -15.64247 -15.57238 -15.22494 -14.99470 -14.76857 -14.60363 -14.32165 -14.10990 -13.59958 -13.49425 -13.32365 -13.16813 -13.16448 -12.85775 -12.68532 -12.57780 -12.47753 -12.23464 -12.14643 -12.08658 -11.96957 -11.45348 -11.22187 -11.11110 -11.05815 -10.58200 -10.52572 -10.08564 -9.89772 -8.68650 -8.52296 -6.18650 -0.25390 0.58038 1.13010 1.35713 1.47088 1.51429 2.15300 2.19697 2.35677 2.81400 2.86092 3.17395 3.42096 3.61351 3.77103 3.78232 3.89796 3.94080 4.06071 4.08197 4.19085 4.25103 4.32899 4.38127 4.45045 4.49878 4.50668 4.65459 4.70135 4.75130 4.83099 4.94123 4.96787 5.01515 5.02623 5.06856 5.18513 5.19984 5.28163 5.33038 5.33231 5.49137 5.58739 5.63483 5.80819 5.96870 6.10065 6.26034 6.59401 6.91873 7.27408 7.68730 8.69412 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.039357 B = 0.001604 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.259611 B =17457.403261 C =17859.276603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.083 3.917 3 H 0.061 0.939 4 C -0.148 4.148 5 C 0.143 3.857 6 H 0.069 0.931 7 N -0.711 5.711 8 C 0.551 3.449 9 O -0.593 6.593 10 C -0.246 4.246 11 C 0.016 3.984 12 C -0.171 4.171 13 C -0.037 4.037 14 C -0.207 4.207 15 C 0.129 3.871 16 O -0.219 6.219 17 C -0.419 4.419 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.041 4.041 27 C -0.162 4.162 28 C 0.066 3.934 29 O -0.394 6.394 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.152 0.848 37 H 0.124 0.876 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.275 0.725 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 10.572 20.668 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.079 0.921 4 C -0.186 4.186 5 C 0.038 3.962 6 H 0.087 0.913 7 N -0.361 5.361 8 C 0.343 3.657 9 O -0.476 6.476 10 C -0.267 4.267 11 C -0.004 4.004 12 C -0.172 4.172 13 C -0.055 4.055 14 C -0.226 4.226 15 C 0.077 3.923 16 O -0.124 6.124 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.216 4.216 20 N -0.550 5.550 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.269 4.269 26 C -0.059 4.059 27 C -0.201 4.201 28 C -0.011 4.011 29 O -0.314 6.314 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.089 10.729 20.857 28.442 hybrid contribution 1.023 -0.320 -1.038 1.492 sum -15.066 10.410 19.818 26.984 Atomic orbital electron populations 1.21774 0.91439 1.03302 1.03384 1.22212 0.96301 0.94990 0.83977 0.92093 1.22487 0.92660 1.03560 0.99907 1.20970 0.94713 0.95576 0.84954 0.91262 1.45814 1.14999 1.42762 1.32568 1.18548 0.81662 0.81856 0.83662 1.90775 1.57754 1.37401 1.61692 1.22770 0.98475 1.05644 0.99801 1.22167 0.94815 0.93047 0.90366 1.18783 0.95567 1.02677 1.00164 1.21289 0.99672 0.92375 0.92160 1.20428 0.93906 1.06465 1.01832 1.20195 0.93844 0.90516 0.87717 1.83884 1.35584 1.52726 1.40240 1.21863 0.92589 1.25092 1.09881 0.87726 1.26604 1.04253 0.95506 0.95275 1.70141 1.39838 1.26036 1.18948 0.84651 0.74666 0.78987 0.77989 1.18131 1.19575 1.18160 1.21203 1.01703 1.02527 1.01421 1.21319 0.94871 0.96405 0.93264 1.22556 1.01190 1.01100 0.95257 1.22571 0.80336 0.99920 0.98291 1.87930 1.21445 1.78201 1.43803 0.91785 0.91733 0.89357 0.89447 0.88873 0.74710 0.83042 0.85814 0.82207 0.85905 0.91587 0.85757 0.83840 0.91919 0.90400 0.92844 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 71.98 0.69 -0.51 16 2 C 0.08 0.98 3.26 30.63 0.10 1.08 16 3 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.15 -1.57 4.89 30.68 0.15 -1.42 16 5 C 0.14 2.26 2.54 45.11 0.11 2.37 16 6 H 0.07 1.39 7.59 -2.39 -0.02 1.38 16 7 N -0.71 -11.61 5.08 -446.35 -2.27 -13.88 16 8 C 0.55 13.07 7.70 86.32 0.66 13.73 16 9 O -0.59 -18.76 15.90 -4.43 -0.07 -18.83 16 10 C -0.25 -5.43 9.41 23.61 0.22 -5.21 16 11 C 0.02 0.42 9.45 23.82 0.23 0.64 16 12 C -0.17 -5.25 5.87 -20.13 -0.12 -5.37 16 13 C -0.04 -1.15 9.40 22.55 0.21 -0.93 16 14 C -0.21 -8.18 9.97 22.34 0.22 -7.96 16 15 C 0.13 6.14 6.66 22.72 0.15 6.29 16 16 O -0.22 -12.67 9.74 -20.25 -0.20 -12.86 16 17 C -0.42 -23.50 9.48 67.93 0.64 -22.85 16 18 H 0.11 5.36 5.18 -2.91 -0.02 5.34 16 19 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 20 N -0.91 -54.15 13.67 21.62 0.30 -53.86 16 21 Si 1.02 41.32 29.55 68.60 2.03 43.34 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 25 C -0.25 -10.41 9.14 22.35 0.20 -10.21 16 26 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 27 C -0.16 -2.58 5.71 30.69 0.18 -2.41 16 28 C 0.07 0.93 6.84 72.01 0.49 1.42 16 29 O -0.39 -6.21 10.41 -148.98 -1.55 -7.76 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.42 4.33 8.58 -92.71 -0.80 3.53 16 36 H 0.15 2.48 6.07 -2.91 -0.02 2.47 16 37 H 0.12 3.32 7.52 -2.91 -0.02 3.30 16 38 H 0.16 3.50 6.16 -2.91 -0.02 3.49 16 39 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 42 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.63 383.42 3.28 -69.35 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.21 Total: 27.46 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 4.84 Total: -32.97 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.97 Total: -67.74 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.82 Total: -39.45 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -72.63 3.28 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.632 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds