Wall clock time and date at job start Tue Mar 31 2020 17:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.48941 * 2 1 4 4 C 1.53092 * 109.48354 * 120.03167 * 2 1 3 5 5 C 1.53174 * 109.16373 * 177.59257 * 4 2 1 6 6 H 1.08998 * 109.54548 * 183.15122 * 5 4 2 7 7 N 1.46500 * 109.54409 * 62.88537 * 5 4 2 8 8 C 1.34777 * 120.00299 * 155.00079 * 7 5 4 9 9 O 1.21727 * 119.99390 * 0.02562 * 8 7 5 10 10 C 1.46249 * 120.00506 * 179.97438 * 8 7 5 11 11 C 1.35025 * 120.00194 * 180.02562 * 10 8 7 12 12 C 1.46957 * 120.00008 * 180.02562 * 11 10 8 13 13 C 1.40026 * 120.10458 * 359.72206 * 12 11 10 14 14 C 1.37590 * 119.90366 * 179.72551 * 13 12 11 15 15 C 1.39179 * 120.09995 * 0.52883 * 14 13 12 16 16 O 1.35571 * 119.90088 * 179.74449 * 15 14 13 17 17 C 1.34785 * 116.99949 * 174.46866 * 16 15 14 18 18 H 1.08001 * 120.00170 * 5.05778 * 17 16 15 19 19 C 1.38711 * 120.00022 * 185.05501 * 17 16 15 20 20 N 1.31505 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47287 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47045 * 120.00199 * 21 19 17 24 24 H 1.48508 * 109.47349 * 240.00127 * 21 19 17 25 25 C 1.39182 * 120.20100 * 359.76958 * 15 14 13 26 26 C 1.37596 * 120.10120 * 359.95159 * 25 15 14 27 27 C 1.53183 * 109.04509 * 303.02610 * 5 4 2 28 28 C 1.53085 * 109.16365 * 56.96383 * 27 5 4 29 29 O 1.42903 * 109.48138 * 239.97690 * 2 1 3 30 30 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47009 * 300.02739 * 1 2 3 32 32 H 1.09005 * 109.47254 * 60.02608 * 1 2 3 33 33 H 1.08998 * 109.51801 * 297.49661 * 4 2 1 34 34 H 1.08998 * 109.51836 * 57.68472 * 4 2 1 35 35 H 0.96995 * 120.00301 * 334.99886 * 7 5 4 36 36 H 1.07995 * 119.99873 * 0.02562 * 10 8 7 37 37 H 1.07995 * 119.99933 * 0.02562 * 11 10 8 38 38 H 1.08003 * 120.04692 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.95411 * 180.27632 * 14 13 12 40 40 H 0.96997 * 120.00638 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.94971 * 179.97438 * 25 15 14 42 42 H 1.08001 * 120.05218 * 180.02562 * 26 25 15 43 43 H 1.09004 * 109.51166 * 297.06315 * 27 5 4 44 44 H 1.09002 * 109.53384 * 176.87613 * 27 5 4 45 45 H 1.09000 * 109.48164 * 182.42003 * 28 27 5 46 46 H 1.09003 * 109.48399 * 62.39647 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2120 6 1 3.9393 -1.3327 2.0705 7 7 4.1058 0.5925 1.2506 8 6 5.3478 0.8163 1.7238 9 8 6.0254 -0.1147 2.1187 10 6 5.8818 2.1772 1.7618 11 6 7.1263 2.4012 2.2353 12 6 7.6626 3.7689 2.2740 13 6 6.8872 4.8406 1.8149 14 6 7.3913 6.1201 1.8582 15 6 8.6741 6.3487 2.3473 16 8 9.1688 7.6105 2.3833 17 6 10.3691 7.7805 2.9724 18 1 10.9286 6.9229 3.3156 19 6 10.8859 9.0571 3.1378 20 7 10.2045 10.1015 2.7203 21 14 12.5491 9.2929 3.9548 22 1 13.1076 7.9695 4.3316 23 1 13.4736 9.9688 3.0094 24 1 12.3886 10.1278 5.1724 25 6 9.4509 5.2859 2.7989 26 6 8.9529 4.0036 2.7647 27 6 4.0179 -1.4598 -0.0811 28 6 3.4307 -0.7092 -1.2792 29 8 2.0066 -0.6741 -1.1665 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 1.7149 -0.1844 2.1398 34 1 1.6443 -1.7375 1.2708 35 1 3.5660 1.3343 0.9356 36 1 5.2808 3.0031 1.4110 37 1 7.7275 1.5753 2.5857 38 1 5.8933 4.6637 1.4310 39 1 6.7923 6.9479 1.5085 40 1 10.5659 10.9942 2.8355 41 1 10.4460 5.4678 3.1772 42 1 9.5562 3.1795 3.1158 43 1 3.6617 -2.4900 -0.0865 44 1 5.1061 -1.4494 -0.1425 45 1 3.7100 -1.2201 -2.2006 46 1 3.8192 0.3091 -1.2961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271297662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:38 Heat of formation + Delta-G solvation = -80.258214 kcal Electronic energy + Delta-G solvation = -26814.102199 eV Core-core repulsion = 22862.331508 eV Total energy + Delta-G solvation = -3951.770691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.57744 -39.26660 -38.81815 -36.92348 -35.25716 -33.25509 -33.16898 -32.36817 -31.60282 -30.45460 -28.41358 -27.89286 -25.72912 -24.64561 -23.52922 -22.57982 -22.21154 -21.18128 -19.71428 -19.41750 -18.22060 -17.18702 -17.14823 -16.67482 -16.28918 -16.18584 -15.24931 -15.07857 -14.83550 -14.59591 -14.45679 -14.10896 -13.90846 -13.82810 -13.54471 -13.14109 -13.06706 -12.91676 -12.73196 -12.60657 -12.43601 -12.22645 -11.96674 -11.79987 -11.73780 -11.53200 -11.29717 -11.16397 -11.10402 -10.68641 -10.68155 -10.54925 -9.83008 -9.80934 -9.63698 -9.51874 -9.18473 -8.87885 -8.40935 -7.14255 -6.67511 -4.22306 1.03633 2.11057 2.52564 3.01965 3.03221 3.09016 3.13768 3.40768 3.53646 3.80241 4.26911 4.37575 4.47893 4.50825 4.66536 4.72091 4.89714 4.90831 4.98679 5.01922 5.12371 5.18848 5.24122 5.25538 5.32269 5.47890 5.50631 5.54556 5.59395 5.64044 5.68155 5.72504 5.76604 5.79242 5.98812 6.09151 6.32781 6.44388 6.46500 6.58222 6.76484 6.88447 6.89680 7.10560 7.21076 7.25498 7.48534 7.61348 7.77953 8.29528 8.77371 9.44141 10.49145 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.001787 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.071977 B =15661.298788 C =16231.519253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.057 0.943 4 C -0.158 4.158 5 C 0.144 3.856 6 H 0.092 0.908 7 N -0.731 5.731 8 C 0.557 3.443 9 O -0.557 6.557 10 C -0.286 4.286 11 C 0.041 3.959 12 C -0.200 4.200 13 C -0.042 4.042 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.242 4.242 26 C -0.034 4.034 27 C -0.166 4.166 28 C 0.063 3.937 29 O -0.380 6.380 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.397 0.603 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -17.815 -4.087 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.074 0.926 4 C -0.196 4.196 5 C 0.039 3.961 6 H 0.110 0.890 7 N -0.383 5.383 8 C 0.350 3.650 9 O -0.438 6.438 10 C -0.307 4.307 11 C 0.021 3.979 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.111 3.889 16 O -0.063 6.063 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.261 4.261 26 C -0.053 4.053 27 C -0.205 4.205 28 C -0.014 4.014 29 O -0.299 6.299 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.232 0.768 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.471 -18.045 -4.026 23.478 hybrid contribution 0.803 0.634 0.434 1.112 sum -13.668 -17.410 -3.591 22.424 Atomic orbital electron populations 1.21771 0.92811 1.03030 1.02634 1.22072 0.95289 0.94888 0.85103 0.92550 1.22526 0.94774 1.03121 0.99154 1.20891 0.92696 0.83814 0.98667 0.88982 1.46010 1.16845 1.08995 1.66477 1.18427 0.80740 0.89734 0.76135 1.90774 1.58609 1.45547 1.48861 1.22422 0.99221 0.94860 1.14192 1.22287 0.93283 0.95153 0.87195 1.18459 0.96580 0.92067 1.12994 1.20873 0.98007 0.91357 0.95837 1.20150 0.94797 0.97075 1.09869 1.19617 0.91970 0.85556 0.91804 1.83904 1.34721 1.22211 1.65454 1.21531 0.92996 0.94322 1.37977 0.88460 1.25403 1.00123 0.94080 0.96902 1.70017 1.37643 0.98866 1.41878 0.85578 0.79563 0.79175 0.78767 1.18847 1.19906 1.19891 1.21105 1.02220 0.92375 1.10445 1.20992 0.93661 0.96058 0.94575 1.22568 1.02351 1.00264 0.95346 1.22542 0.80569 1.00006 0.98295 1.87939 1.21234 1.77918 1.42801 0.91732 0.90960 0.91698 0.90068 0.89519 0.76814 0.85978 0.85947 0.86458 0.86125 0.91619 0.85099 0.86809 0.90292 0.90092 0.88812 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.48 16 2 C 0.08 0.60 3.09 -26.68 -0.08 0.52 16 3 H 0.06 0.38 6.71 -51.93 -0.35 0.03 16 4 C -0.16 -1.08 5.07 -26.59 -0.13 -1.22 16 5 C 0.14 1.31 2.82 -67.75 -0.19 1.12 16 6 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 7 N -0.73 -7.21 4.39 -55.07 -0.24 -7.45 16 8 C 0.56 7.48 7.71 -13.04 -0.10 7.38 16 9 O -0.56 -9.36 15.89 5.16 0.08 -9.28 16 10 C -0.29 -3.79 9.41 -37.51 -0.35 -4.14 16 11 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.36 5.87 -105.03 -0.62 -3.97 16 13 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 14 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16 15 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 16 O -0.16 -4.37 9.74 0.73 0.01 -4.36 16 17 C -0.39 -10.37 9.48 30.91 0.29 -10.08 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.85 -23.70 13.67 55.48 0.76 -22.94 16 21 Si 0.95 19.42 29.55 -169.99 -5.02 14.39 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 26 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 27 C -0.17 -1.47 5.80 -26.59 -0.15 -1.62 16 28 C 0.06 0.53 6.68 37.20 0.25 0.77 16 29 O -0.38 -3.48 10.41 -35.23 -0.37 -3.84 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.12 7.05 -40.82 -0.29 2.83 16 36 H 0.12 1.39 6.07 -52.49 -0.32 1.07 16 37 H 0.12 1.82 7.52 -52.49 -0.39 1.43 16 38 H 0.12 1.60 6.16 -52.48 -0.32 1.27 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -30.72 379.57 -8.41 -39.13 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.40 Total: 7.33 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.95 Total: -18.70 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.52 Total: -30.39 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.28 Total: -17.48 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.72 -8.41 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.129 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds