Wall clock time and date at job start Tue Mar 31 2020 17:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.48941 * 2 1 4 4 C 1.53092 * 109.48354 * 120.03167 * 2 1 3 5 5 C 1.53174 * 109.16373 * 177.59257 * 4 2 1 6 6 H 1.08998 * 109.54548 * 183.15122 * 5 4 2 7 7 N 1.46500 * 109.54409 * 62.88537 * 5 4 2 8 8 C 1.34777 * 120.00299 * 155.00079 * 7 5 4 9 9 O 1.21727 * 119.99390 * 0.02562 * 8 7 5 10 10 C 1.46249 * 120.00506 * 179.97438 * 8 7 5 11 11 C 1.35025 * 120.00194 * 180.02562 * 10 8 7 12 12 C 1.46957 * 120.00008 * 180.02562 * 11 10 8 13 13 C 1.40026 * 120.10458 * 359.72206 * 12 11 10 14 14 C 1.37590 * 119.90366 * 179.72551 * 13 12 11 15 15 C 1.39179 * 120.09995 * 0.52883 * 14 13 12 16 16 O 1.35571 * 119.90088 * 179.74449 * 15 14 13 17 17 C 1.34785 * 116.99949 * 174.46866 * 16 15 14 18 18 H 1.08001 * 120.00170 * 5.05778 * 17 16 15 19 19 C 1.38711 * 120.00022 * 185.05501 * 17 16 15 20 20 N 1.31505 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47287 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47045 * 120.00199 * 21 19 17 24 24 H 1.48508 * 109.47349 * 240.00127 * 21 19 17 25 25 C 1.39182 * 120.20100 * 359.76958 * 15 14 13 26 26 C 1.37596 * 120.10120 * 359.95159 * 25 15 14 27 27 C 1.53183 * 109.04509 * 303.02610 * 5 4 2 28 28 C 1.53085 * 109.16365 * 56.96383 * 27 5 4 29 29 O 1.42903 * 109.48138 * 239.97690 * 2 1 3 30 30 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47009 * 300.02739 * 1 2 3 32 32 H 1.09005 * 109.47254 * 60.02608 * 1 2 3 33 33 H 1.08998 * 109.51801 * 297.49661 * 4 2 1 34 34 H 1.08998 * 109.51836 * 57.68472 * 4 2 1 35 35 H 0.96995 * 120.00301 * 334.99886 * 7 5 4 36 36 H 1.07995 * 119.99873 * 0.02562 * 10 8 7 37 37 H 1.07995 * 119.99933 * 0.02562 * 11 10 8 38 38 H 1.08003 * 120.04692 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.95411 * 180.27632 * 14 13 12 40 40 H 0.96997 * 120.00638 * 180.02562 * 20 19 17 41 41 H 1.07997 * 119.94971 * 179.97438 * 25 15 14 42 42 H 1.08001 * 120.05218 * 180.02562 * 26 25 15 43 43 H 1.09004 * 109.51166 * 297.06315 * 27 5 4 44 44 H 1.09002 * 109.53384 * 176.87613 * 27 5 4 45 45 H 1.09000 * 109.48164 * 182.42003 * 28 27 5 46 46 H 1.09003 * 109.48399 * 62.39647 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2120 6 1 3.9393 -1.3327 2.0705 7 7 4.1058 0.5925 1.2506 8 6 5.3478 0.8163 1.7238 9 8 6.0254 -0.1147 2.1187 10 6 5.8818 2.1772 1.7618 11 6 7.1263 2.4012 2.2353 12 6 7.6626 3.7689 2.2740 13 6 6.8872 4.8406 1.8149 14 6 7.3913 6.1201 1.8582 15 6 8.6741 6.3487 2.3473 16 8 9.1688 7.6105 2.3833 17 6 10.3691 7.7805 2.9724 18 1 10.9286 6.9229 3.3156 19 6 10.8859 9.0571 3.1378 20 7 10.2045 10.1015 2.7203 21 14 12.5491 9.2929 3.9548 22 1 13.1076 7.9695 4.3316 23 1 13.4736 9.9688 3.0094 24 1 12.3886 10.1278 5.1724 25 6 9.4509 5.2859 2.7989 26 6 8.9529 4.0036 2.7647 27 6 4.0179 -1.4598 -0.0811 28 6 3.4307 -0.7092 -1.2792 29 8 2.0066 -0.6741 -1.1665 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 1.7149 -0.1844 2.1398 34 1 1.6443 -1.7375 1.2708 35 1 3.5660 1.3343 0.9356 36 1 5.2808 3.0031 1.4110 37 1 7.7275 1.5753 2.5857 38 1 5.8933 4.6637 1.4310 39 1 6.7923 6.9479 1.5085 40 1 10.5659 10.9942 2.8355 41 1 10.4460 5.4678 3.1772 42 1 9.5562 3.1795 3.1158 43 1 3.6617 -2.4900 -0.0865 44 1 5.1061 -1.4494 -0.1425 45 1 3.7100 -1.2201 -2.2006 46 1 3.8192 0.3091 -1.2961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271297662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:38 Heat of formation + Delta-G solvation = -99.079315 kcal Electronic energy + Delta-G solvation = -26814.918343 eV Core-core repulsion = 22862.331508 eV Total energy + Delta-G solvation = -3952.586835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41412 -40.83522 -39.80907 -38.48911 -36.12684 -34.74364 -34.02489 -33.73491 -32.52257 -31.96762 -29.69213 -28.61789 -27.51140 -25.44806 -24.67222 -23.74006 -23.19283 -22.43237 -20.76593 -20.49865 -19.78222 -18.85031 -18.32816 -17.29441 -17.10144 -16.97808 -16.45344 -16.41267 -16.08950 -15.97669 -15.63444 -15.55492 -15.20391 -14.89698 -14.68846 -14.58035 -14.11501 -13.88192 -13.61264 -13.54266 -13.34511 -13.30992 -13.14978 -12.95126 -12.82587 -12.73638 -12.56651 -12.20635 -12.10986 -12.09604 -11.95585 -11.30668 -11.21715 -11.12710 -10.97362 -10.59251 -10.48616 -10.05232 -9.89848 -8.68756 -8.52921 -6.18991 -0.25398 0.58009 1.12827 1.35590 1.44697 1.53417 2.14588 2.22517 2.36085 2.82900 2.85790 3.17263 3.41851 3.63548 3.75891 3.81547 3.87537 3.94112 3.98924 4.07973 4.17379 4.28200 4.31161 4.34956 4.47062 4.52229 4.65038 4.65225 4.74235 4.76979 4.86177 4.93925 4.95342 5.02510 5.04850 5.06917 5.16558 5.19206 5.27381 5.33156 5.34213 5.50781 5.58654 5.63503 5.80778 5.96950 6.09991 6.28713 6.56020 6.91616 7.26553 7.68708 8.69335 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.001787 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.071977 B =15661.298788 C =16231.519253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.064 0.936 4 C -0.148 4.148 5 C 0.141 3.859 6 H 0.076 0.924 7 N -0.712 5.712 8 C 0.553 3.447 9 O -0.591 6.591 10 C -0.247 4.247 11 C 0.017 3.983 12 C -0.171 4.171 13 C -0.037 4.037 14 C -0.207 4.207 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.249 4.249 26 C -0.040 4.040 27 C -0.162 4.162 28 C 0.064 3.936 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.411 0.589 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.123 0.877 40 H 0.275 0.725 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.832 -20.689 -4.197 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.021 3.979 3 H 0.082 0.918 4 C -0.186 4.186 5 C 0.037 3.963 6 H 0.095 0.905 7 N -0.364 5.364 8 C 0.344 3.656 9 O -0.474 6.474 10 C -0.268 4.268 11 C -0.003 4.003 12 C -0.172 4.172 13 C -0.055 4.055 14 C -0.226 4.226 15 C 0.078 3.922 16 O -0.125 6.125 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.268 4.268 26 C -0.059 4.059 27 C -0.201 4.201 28 C -0.012 4.012 29 O -0.313 6.313 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.168 0.832 37 H 0.142 0.858 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.596 -20.986 -4.156 27.076 hybrid contribution 1.012 0.948 0.351 1.431 sum -15.584 -20.038 -3.805 25.668 Atomic orbital electron populations 1.21785 0.91773 1.03194 1.03332 1.22259 0.96159 0.95043 0.84456 0.91816 1.22480 0.92673 1.03833 0.99647 1.20982 0.94254 0.82949 0.98160 0.90549 1.45900 1.15725 1.10078 1.64689 1.18512 0.81534 0.89341 0.76189 1.90781 1.59745 1.46514 1.50350 1.22766 0.98347 0.95627 1.10065 1.22166 0.94411 0.93928 0.89782 1.18780 0.95773 0.93111 1.09491 1.21280 0.99614 0.89789 0.94793 1.20425 0.93897 0.98727 1.09564 1.20197 0.93583 0.85219 0.93244 1.83886 1.35633 1.24246 1.68693 1.21934 0.93545 0.95018 1.38671 0.87705 1.26608 1.04178 0.93499 0.97497 1.70147 1.40180 0.99372 1.45336 0.84524 0.74489 0.79542 0.77660 1.17417 1.19312 1.19316 1.21200 1.01980 0.93184 1.10469 1.21319 0.94575 0.95596 0.94361 1.22512 1.01187 1.00917 0.95511 1.22544 0.80444 0.99916 0.98341 1.87939 1.21348 1.78280 1.43777 0.91871 0.89327 0.91973 0.88784 0.88897 0.75190 0.83180 0.85774 0.82241 0.85908 0.91586 0.85814 0.83844 0.89543 0.91880 0.88076 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.56 71.98 0.69 -0.52 16 2 C 0.08 0.85 3.09 30.62 0.09 0.95 16 3 H 0.06 0.60 6.71 -2.39 -0.02 0.58 16 4 C -0.15 -1.53 5.07 30.68 0.16 -1.37 16 5 C 0.14 2.17 2.82 45.11 0.13 2.29 16 6 H 0.08 1.47 7.58 -2.39 -0.02 1.45 16 7 N -0.71 -11.40 4.39 -446.35 -1.96 -13.36 16 8 C 0.55 12.83 7.71 86.32 0.67 13.50 16 9 O -0.59 -18.39 15.89 -4.44 -0.07 -18.46 16 10 C -0.25 -5.38 9.41 23.61 0.22 -5.16 16 11 C 0.02 0.44 9.45 23.82 0.23 0.67 16 12 C -0.17 -5.20 5.87 -20.13 -0.12 -5.32 16 13 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 14 C -0.21 -8.13 9.97 22.34 0.22 -7.91 16 15 C 0.13 6.13 6.66 22.72 0.15 6.28 16 16 O -0.22 -12.65 9.74 -20.32 -0.20 -12.84 16 17 C -0.42 -23.31 9.48 67.93 0.64 -22.67 16 18 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 19 C -0.02 -1.05 5.49 84.85 0.47 -0.58 16 20 N -0.91 -54.19 13.67 21.62 0.30 -53.89 16 21 Si 1.02 41.39 29.55 68.60 2.03 43.41 16 22 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 C -0.25 -10.37 9.14 22.34 0.20 -10.17 16 26 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 27 C -0.16 -2.52 5.80 30.68 0.18 -2.34 16 28 C 0.06 0.91 6.68 72.01 0.48 1.39 16 29 O -0.39 -6.12 10.41 -148.98 -1.55 -7.67 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.41 4.52 7.05 -92.71 -0.65 3.87 16 36 H 0.15 2.44 6.07 -2.91 -0.02 2.42 16 37 H 0.12 3.29 7.52 -2.91 -0.02 3.27 16 38 H 0.16 3.46 6.16 -2.91 -0.02 3.45 16 39 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.12 5.23 5.62 -2.91 -0.02 5.21 16 42 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 Total: -1.00 -72.06 379.57 3.74 -68.33 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.35 Total: 27.50 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 4.84 Total: -33.01 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -1.67 Total: -67.25 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.82 Total: -38.98 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -72.06 3.74 -68.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271297662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.754 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds