Wall clock time and date at job start Tue Mar 31 2020 17:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46929 * 2 1 4 4 O 1.21285 * 119.99834 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00208 * 179.97438 * 3 2 1 6 6 C 1.47024 * 125.64398 * 0.03727 * 5 3 2 7 7 C 1.54327 * 107.26771 * 178.90871 * 6 5 3 8 8 C 1.55154 * 102.94434 * 337.80518 * 7 6 5 9 9 H 1.09002 * 111.03396 * 277.41779 * 8 7 6 10 10 C 1.50700 * 111.00569 * 153.57875 * 8 7 6 11 11 O 1.20823 * 119.99703 * 247.80042 * 10 8 7 12 12 O 1.34228 * 119.99788 * 67.80506 * 10 8 7 13 13 C 1.45200 * 116.99552 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46750 * 179.97438 * 13 12 10 15 15 C 1.38629 * 119.74940 * 90.00397 * 14 13 12 16 16 C 1.37624 * 120.24650 * 179.97438 * 15 14 13 17 17 C 1.40709 * 119.74609 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24474 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00017 * 155.57121 * 18 17 16 20 20 C 1.39945 * 119.99955 * 335.30142 * 18 17 16 21 21 N 1.30820 * 120.00086 * 342.55190 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 162.55208 * 20 18 17 23 23 H 1.48497 * 109.47547 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46828 * 119.99994 * 22 20 18 25 25 H 1.48502 * 109.46817 * 239.99969 * 22 20 18 26 26 C 1.40718 * 119.51124 * 0.26996 * 17 16 15 27 27 C 1.37612 * 119.74589 * 359.43093 * 26 17 16 28 28 C 1.47418 * 125.64962 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47880 * 300.00348 * 1 2 3 30 30 H 1.08997 * 109.47035 * 60.00879 * 1 2 3 31 31 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47400 * 239.99765 * 2 1 3 33 33 H 1.09006 * 109.46780 * 119.99138 * 2 1 3 34 34 H 1.09002 * 109.88332 * 298.32275 * 6 5 3 35 35 H 1.08999 * 109.88640 * 59.33224 * 6 5 3 36 36 H 1.09003 * 110.71498 * 219.44167 * 7 6 5 37 37 H 1.08996 * 110.72262 * 96.17266 * 7 6 5 38 38 H 1.09000 * 109.47074 * 60.00412 * 13 12 10 39 39 H 1.08998 * 109.47392 * 299.99844 * 13 12 10 40 40 H 1.07998 * 119.88148 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.12321 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00216 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.12485 * 179.70167 * 26 17 16 44 44 H 1.07998 * 119.88053 * 180.31646 * 27 26 17 45 45 H 1.09001 * 110.36757 * 85.32984 * 28 5 3 46 46 H 1.08995 * 110.46718 * 323.04965 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.4181 0.6491 0.0003 7 6 5.7689 1.3950 -0.0269 8 6 5.3888 2.7810 -0.6117 9 1 5.3399 2.7463 -1.7001 10 6 6.3521 3.8443 -0.1508 11 8 5.9779 4.7140 0.5998 12 8 7.6257 3.8252 -0.5743 13 6 8.4971 4.8809 -0.0901 14 6 9.8773 4.6968 -0.6665 15 6 10.2043 5.2957 -1.8732 16 6 11.4619 5.1348 -2.4087 17 6 12.4173 4.3593 -1.7263 18 6 13.7126 4.1874 -2.2666 19 1 14.5424 3.9540 -1.6160 20 6 13.9183 4.3142 -3.6450 21 7 12.9023 4.2499 -4.4666 22 14 15.6436 4.5755 -4.3118 23 1 16.6097 4.6118 -3.1846 24 1 15.9938 3.4611 -5.2288 25 1 15.6987 5.8617 -5.0520 26 6 12.0725 3.7518 -0.5047 27 6 10.8111 3.9314 0.0151 28 6 3.9831 3.0020 0.0001 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 4.3485 0.0411 0.9024 35 1 4.3238 0.0156 -0.8816 36 1 6.4787 0.8835 -0.6772 37 1 6.1725 1.4989 0.9802 38 1 8.5496 4.8384 0.9978 39 1 8.1008 5.8487 -0.3973 40 1 9.4698 5.8915 -2.3947 41 1 11.7144 5.6020 -3.3492 42 1 13.0448 4.3381 -5.4220 43 1 12.7966 3.1506 0.0250 44 1 10.5458 3.4704 0.9550 45 1 4.0683 3.3814 1.0183 46 1 3.4063 3.6931 -0.6145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271864821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:40 Heat of formation + Delta-G solvation = -114.266215 kcal Electronic energy + Delta-G solvation = -26978.436052 eV Core-core repulsion = 23025.190663 eV Total energy + Delta-G solvation = -3953.245388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80889 -39.86261 -37.93329 -37.45782 -36.08463 -33.91704 -33.26904 -32.11316 -30.79511 -29.55936 -29.41307 -27.39338 -25.83595 -24.05766 -23.10061 -22.64590 -21.13489 -20.24181 -20.08714 -19.49371 -17.85238 -17.57381 -17.43708 -16.72889 -16.11042 -15.84564 -15.62226 -15.33456 -14.94072 -14.25992 -14.14268 -13.91585 -13.81084 -13.63559 -13.23784 -13.00875 -12.69045 -12.60560 -12.54067 -12.33987 -12.12486 -12.06967 -11.97868 -11.80468 -11.57624 -11.53147 -11.23394 -11.21518 -11.02830 -10.88240 -10.48831 -10.31396 -10.21234 -10.12786 -9.74033 -9.51758 -9.27113 -8.98416 -7.61155 -7.49765 -6.90654 -4.50914 2.27214 2.28721 2.36810 2.61628 2.93103 2.96501 3.00546 3.05455 3.32894 3.82509 3.93782 4.13361 4.38793 4.45781 4.58921 4.70544 4.75212 4.85489 4.90837 5.04896 5.14375 5.23908 5.42664 5.44236 5.54355 5.56329 5.60259 5.61300 5.62983 5.66166 5.72832 5.85631 5.93874 6.02626 6.19733 6.26649 6.76047 6.82991 6.93524 7.13571 7.16015 7.21895 7.47150 7.68867 7.86104 7.91748 7.94765 7.96760 8.14829 8.49829 8.74364 8.82217 10.03010 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.025462 B = 0.001896 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.421963 B =14762.904522 C =15158.262016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.539 6.539 5 N -0.623 5.623 6 C 0.101 3.899 7 C -0.118 4.118 8 C -0.101 4.101 9 H 0.122 0.878 10 C 0.468 3.532 11 O -0.515 6.515 12 O -0.345 6.345 13 C 0.136 3.864 14 C -0.237 4.237 15 C -0.075 4.075 16 C -0.170 4.170 17 C 0.118 3.882 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.785 5.785 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.230 4.230 27 C -0.064 4.064 28 C 0.122 3.878 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.282 0.718 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 -9.364 4.832 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.022 4.022 7 C -0.156 4.156 8 C -0.121 4.121 9 H 0.140 0.860 10 C 0.311 3.689 11 O -0.405 6.405 12 O -0.261 6.261 13 C 0.064 3.936 14 C -0.238 4.238 15 C -0.094 4.094 16 C -0.189 4.189 17 C 0.115 3.885 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.249 4.249 27 C -0.082 4.082 28 C 0.000 4.000 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.551 -8.616 4.805 18.416 hybrid contribution 0.923 0.137 -0.415 1.022 sum -14.628 -8.479 4.389 17.468 Atomic orbital electron populations 1.21545 0.92905 1.01652 1.03440 1.21620 0.98583 0.93307 1.04378 1.20514 0.80070 0.92083 0.75717 1.90725 1.54230 1.46804 1.49770 1.48544 1.05362 1.07923 1.73960 1.22120 0.86291 0.91343 1.02487 1.22636 0.96732 0.93120 1.03135 1.22130 0.92794 0.93847 1.03339 0.86021 1.23024 0.82986 0.84825 0.78108 1.90652 1.78483 1.37117 1.34219 1.86723 1.19865 1.52618 1.66904 1.21770 0.86927 0.87452 0.97452 1.18672 0.92406 1.12335 1.00421 1.20543 0.96417 0.98547 0.93891 1.21300 0.93418 1.02495 1.01707 1.17700 0.92896 0.87517 0.90388 1.19715 0.94878 1.41567 0.92234 0.90108 1.25976 0.99162 0.92085 0.97205 1.69827 1.32691 1.33700 1.04717 0.86232 0.82105 0.78830 0.79448 1.18266 1.19865 1.19568 1.20969 0.96242 1.07112 1.00585 1.20385 0.93884 0.96532 0.97395 1.22033 0.90442 0.84999 1.02569 0.91955 0.91931 0.91966 0.88820 0.88895 0.90653 0.90517 0.87954 0.89699 0.92023 0.91942 0.89318 0.86225 0.90651 0.88702 0.89312 0.89710 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.14 -0.92 5.61 -27.88 -0.16 -1.07 16 3 C 0.53 5.67 7.85 -10.99 -0.09 5.58 16 4 O -0.54 -8.02 16.24 5.55 0.09 -7.93 16 5 N -0.62 -6.09 3.33 -170.53 -0.57 -6.65 16 6 C 0.10 0.67 6.49 -3.06 -0.02 0.65 16 7 C -0.12 -0.98 6.41 -24.90 -0.16 -1.14 16 8 C -0.10 -1.10 3.54 -89.63 -0.32 -1.41 16 9 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 10 C 0.47 6.98 7.27 36.01 0.26 7.24 16 11 O -0.52 -8.88 15.47 -18.75 -0.29 -9.17 16 12 O -0.34 -5.94 10.20 -39.25 -0.40 -6.34 16 13 C 0.14 2.48 5.58 36.01 0.20 2.68 16 14 C -0.24 -5.06 5.54 -104.33 -0.58 -5.64 16 15 C -0.08 -1.71 9.67 -39.66 -0.38 -2.10 16 16 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 17 C 0.12 3.02 5.57 -106.83 -0.60 2.42 16 18 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 20 C 0.07 1.79 5.15 -17.34 -0.09 1.70 16 21 N -0.78 -19.44 10.95 55.55 0.61 -18.83 16 22 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 27 C -0.06 -1.37 9.67 -39.66 -0.38 -1.75 16 28 C 0.12 1.39 6.03 -2.54 -0.02 1.38 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 38 H 0.06 1.06 8.07 -51.93 -0.42 0.65 16 39 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 3.09 6.16 -52.48 -0.32 2.76 16 42 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 43 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.08 1.08 7.40 -51.93 -0.38 0.69 16 46 H 0.09 1.07 8.04 -51.93 -0.42 0.66 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -30.48 387.57 -9.79 -40.26 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.00 Total: 4.42 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -3.04 Total: -14.35 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.04 Total: -25.49 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.60 Total: -23.44 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.48 -9.79 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271864821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.002 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds