Wall clock time and date at job start Tue Mar 31 2020 17:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47097 * 2 1 4 4 O 1.21281 * 119.99672 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.47023 * 125.64807 * 359.97438 * 5 3 2 7 7 C 1.54324 * 107.27292 * 181.10295 * 6 5 3 8 8 C 1.55161 * 102.94117 * 22.19289 * 7 6 5 9 9 H 1.08999 * 111.00191 * 82.61215 * 8 7 6 10 10 C 1.50703 * 111.00219 * 206.42424 * 8 7 6 11 11 O 1.20816 * 119.99993 * 118.54550 * 10 8 7 12 12 O 1.34227 * 119.99824 * 298.54644 * 10 8 7 13 13 C 1.45206 * 116.99945 * 180.02562 * 12 10 8 14 14 C 1.50700 * 109.47077 * 179.97438 * 13 12 10 15 15 C 1.38642 * 119.74869 * 89.99956 * 14 13 12 16 16 C 1.37614 * 120.24522 * 179.97438 * 15 14 13 17 17 C 1.40711 * 119.74615 * 359.97438 * 16 15 14 18 18 C 1.41401 * 120.24291 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99707 * 335.39771 * 18 17 16 20 20 C 1.39942 * 120.00035 * 155.40458 * 18 17 16 21 21 N 1.30821 * 119.99873 * 342.72591 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 162.72812 * 20 18 17 23 23 H 1.48497 * 109.47622 * 87.71691 * 22 20 18 24 24 H 1.48499 * 109.47361 * 327.71597 * 22 20 18 25 25 H 1.48509 * 109.47038 * 207.71635 * 22 20 18 26 26 C 1.40710 * 119.51502 * 0.28206 * 17 16 15 27 27 C 1.37624 * 119.74216 * 359.41830 * 26 17 16 28 28 C 1.47428 * 125.65206 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46947 * 59.99699 * 1 2 3 30 30 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47496 * 299.99719 * 1 2 3 32 32 H 1.09002 * 109.47016 * 240.00492 * 2 1 3 33 33 H 1.08996 * 109.47301 * 120.00148 * 2 1 3 34 34 H 1.09004 * 109.88297 * 61.68229 * 6 5 3 35 35 H 1.09004 * 110.00992 * 300.59293 * 6 5 3 36 36 H 1.09001 * 110.71982 * 263.82739 * 7 6 5 37 37 H 1.09006 * 110.72222 * 140.55436 * 7 6 5 38 38 H 1.08992 * 109.47161 * 59.99512 * 13 12 10 39 39 H 1.09002 * 109.46831 * 299.99978 * 13 12 10 40 40 H 1.07997 * 119.86980 * 359.97328 * 15 14 13 41 41 H 1.08002 * 120.12578 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99973 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.13004 * 179.70079 * 26 17 16 44 44 H 1.07997 * 119.87414 * 180.32008 * 27 26 17 45 45 H 1.08998 * 110.36373 * 36.98418 * 28 5 3 46 46 H 1.09002 * 110.36151 * 274.66342 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.4181 0.6491 0.0017 7 6 5.7689 1.3949 0.0303 8 6 5.3882 2.7809 0.6147 9 1 5.3389 2.7458 1.7030 10 6 6.3520 3.8442 0.1547 11 8 5.9540 4.7769 -0.5022 12 8 7.6525 3.7551 0.4747 13 6 8.5228 4.8153 -0.0018 14 6 9.9349 4.5480 0.4516 15 6 10.7856 3.8031 -0.3506 16 6 12.0772 3.5533 0.0532 17 6 12.5334 4.0574 1.2852 18 6 13.8587 3.8075 1.7101 19 1 14.3920 2.9458 1.3368 20 6 14.4792 4.6766 2.6146 21 7 13.9921 5.8751 2.8090 22 14 16.0028 4.1254 3.5442 23 1 17.2116 4.4249 2.7354 24 1 15.9264 2.6642 3.7977 25 1 16.0816 4.8489 4.8387 26 6 11.6595 4.8075 2.0936 27 6 10.3738 5.0503 1.6669 28 6 3.9832 3.0020 0.0011 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.3493 0.0411 -0.9004 35 1 4.3258 0.0153 0.8836 36 1 6.1734 1.4988 -0.9765 37 1 6.4781 0.8835 0.6812 38 1 8.1866 5.7703 0.4018 39 1 8.4908 4.8497 -1.0908 40 1 10.4333 3.4176 -1.2958 41 1 12.7385 2.9732 -0.5734 42 1 14.4224 6.4777 3.4357 43 1 11.9978 5.1951 3.0432 44 1 9.7029 5.6301 2.2833 45 1 3.4050 3.6917 0.6159 46 1 4.0693 3.3809 -1.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271864823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:44 Heat of formation + Delta-G solvation = -114.261175 kcal Electronic energy + Delta-G solvation = -26944.971266 eV Core-core repulsion = 22991.726096 eV Total energy + Delta-G solvation = -3953.245170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82111 -39.87708 -37.93637 -37.46854 -36.10310 -33.91680 -33.28372 -32.13321 -30.79340 -29.56824 -29.41354 -27.39513 -25.84850 -24.05843 -23.10692 -22.65460 -21.13533 -20.27349 -20.08999 -19.50757 -17.83721 -17.58657 -17.43469 -16.74939 -16.14627 -15.85945 -15.62280 -15.33456 -14.95699 -14.26422 -14.16643 -13.92444 -13.82111 -13.62190 -13.24296 -13.02460 -12.70065 -12.62363 -12.55516 -12.35802 -12.15610 -12.07649 -11.99688 -11.68412 -11.56034 -11.53266 -11.29862 -11.23281 -11.15136 -10.67880 -10.67612 -10.28321 -10.22367 -10.13975 -9.74469 -9.51481 -9.25804 -9.00386 -7.60963 -7.50259 -6.90705 -4.50713 2.25550 2.28602 2.35503 2.61228 2.93348 2.96578 2.99725 3.04586 3.32099 3.82355 3.90831 4.12562 4.36740 4.45940 4.57473 4.69207 4.73665 4.83900 4.88305 5.03575 5.13070 5.22670 5.41642 5.43225 5.52838 5.56086 5.59684 5.61117 5.62357 5.65745 5.70864 5.84277 5.92565 6.03358 6.20048 6.26738 6.74765 6.82977 6.93513 7.13496 7.14480 7.21878 7.47059 7.68788 7.84687 7.91478 7.93559 7.96386 8.14843 8.49538 8.74354 8.82204 10.03280 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.001853 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.568597 B =15110.209959 C =15482.089325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.538 6.538 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.119 4.119 8 C -0.101 4.101 9 H 0.122 0.878 10 C 0.468 3.532 11 O -0.514 6.514 12 O -0.346 6.346 13 C 0.136 3.864 14 C -0.237 4.237 15 C -0.063 4.063 16 C -0.230 4.230 17 C 0.119 3.881 18 C -0.456 4.456 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.786 5.786 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.260 1.260 25 H -0.275 1.275 26 C -0.170 4.170 27 C -0.075 4.075 28 C 0.123 3.877 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.283 0.717 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -11.560 -2.349 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.157 4.157 8 C -0.120 4.120 9 H 0.140 0.860 10 C 0.310 3.690 11 O -0.404 6.404 12 O -0.262 6.262 13 C 0.064 3.936 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.250 4.250 17 C 0.116 3.884 18 C -0.484 4.484 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.410 5.410 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.183 1.183 25 H -0.200 1.200 26 C -0.189 4.189 27 C -0.094 4.094 28 C 0.001 3.999 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.893 -10.558 -2.425 20.068 hybrid contribution 0.946 0.044 0.378 1.020 sum -15.947 -10.513 -2.047 19.210 Atomic orbital electron populations 1.21546 0.92903 1.01656 1.03444 1.21619 0.98584 0.93302 1.04376 1.20515 0.80072 0.92085 0.75716 1.90725 1.54231 1.46803 1.49743 1.48552 1.05364 1.07925 1.73979 1.22123 0.86340 0.91366 1.02479 1.22645 0.96639 0.93155 1.03212 1.22135 0.92778 0.93892 1.03242 0.85968 1.23025 0.83244 0.85606 0.77131 1.90659 1.78996 1.33745 1.36961 1.86703 1.17759 1.51133 1.70614 1.21759 0.86749 0.87268 0.97835 1.18650 0.92167 1.12836 1.00158 1.20377 0.94010 0.96564 0.97213 1.20949 0.95966 1.10052 0.98013 1.17694 0.92755 0.88572 0.89397 1.19669 0.98026 1.09006 1.21747 0.90165 1.25974 0.99146 0.93846 0.95419 1.69815 1.38119 1.04939 1.28167 0.86287 0.80918 0.80299 0.79109 1.19321 1.18348 1.19987 1.21301 0.92136 1.04594 1.00885 1.20541 0.95970 0.98440 0.94427 1.22026 0.90492 0.84973 1.02450 0.91955 0.91963 0.91928 0.88889 0.88831 0.90657 0.90546 0.89658 0.87973 0.91916 0.92007 0.89315 0.88703 0.90586 0.86247 0.89318 0.89437 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.89 5.61 -27.88 -0.16 -1.05 16 3 C 0.53 5.55 7.85 -10.99 -0.09 5.47 16 4 O -0.54 -7.91 16.24 5.56 0.09 -7.82 16 5 N -0.62 -5.92 3.33 -170.52 -0.57 -6.49 16 6 C 0.10 0.63 6.49 -3.06 -0.02 0.61 16 7 C -0.12 -0.94 6.40 -24.89 -0.16 -1.10 16 8 C -0.10 -1.05 3.54 -89.62 -0.32 -1.37 16 9 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 10 C 0.47 6.83 7.26 36.01 0.26 7.09 16 11 O -0.51 -8.83 15.55 -18.74 -0.29 -9.12 16 12 O -0.35 -5.80 10.19 -39.25 -0.40 -6.20 16 13 C 0.14 2.48 5.58 36.01 0.20 2.68 16 14 C -0.24 -5.05 5.54 -104.33 -0.58 -5.62 16 15 C -0.06 -1.36 9.67 -39.66 -0.38 -1.75 16 16 C -0.23 -5.42 9.80 -38.88 -0.38 -5.80 16 17 C 0.12 3.04 5.57 -106.83 -0.60 2.44 16 18 C -0.46 -11.56 9.06 -37.74 -0.34 -11.90 16 19 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 20 C 0.08 1.81 5.15 -17.34 -0.09 1.72 16 21 N -0.79 -19.50 10.95 55.55 0.61 -18.89 16 22 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 24 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.17 -4.25 8.69 -38.87 -0.34 -4.59 16 27 C -0.08 -1.70 9.67 -39.66 -0.38 -2.09 16 28 C 0.12 1.37 5.98 -2.53 -0.02 1.36 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 43 H 0.12 3.08 6.17 -52.49 -0.32 2.75 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.09 1.06 8.04 -51.93 -0.42 0.64 16 46 H 0.08 1.04 7.51 -51.93 -0.39 0.65 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -30.44 387.68 -9.79 -40.23 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.00 Total: 4.20 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.04 Total: -14.49 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.04 Total: -25.38 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.60 Total: -23.15 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.44 -9.79 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271864823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.032 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds