Wall clock time and date at job start Tue Mar 31 2020 17:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47097 * 2 1 4 4 O 1.21281 * 119.99672 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00175 * 179.97438 * 3 2 1 6 6 C 1.47023 * 125.64807 * 359.97438 * 5 3 2 7 7 C 1.54324 * 107.27292 * 181.10295 * 6 5 3 8 8 C 1.55161 * 102.94117 * 22.19289 * 7 6 5 9 9 H 1.08999 * 111.00191 * 82.61215 * 8 7 6 10 10 C 1.50703 * 111.00219 * 206.42424 * 8 7 6 11 11 O 1.20816 * 119.99993 * 118.54550 * 10 8 7 12 12 O 1.34227 * 119.99824 * 298.54644 * 10 8 7 13 13 C 1.45206 * 116.99945 * 180.02562 * 12 10 8 14 14 C 1.50700 * 109.47077 * 179.97438 * 13 12 10 15 15 C 1.38642 * 119.74869 * 89.99956 * 14 13 12 16 16 C 1.37614 * 120.24522 * 179.97438 * 15 14 13 17 17 C 1.40711 * 119.74615 * 359.97438 * 16 15 14 18 18 C 1.41401 * 120.24291 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99707 * 335.39771 * 18 17 16 20 20 C 1.39942 * 120.00035 * 155.40458 * 18 17 16 21 21 N 1.30821 * 119.99873 * 342.72591 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 162.72812 * 20 18 17 23 23 H 1.48497 * 109.47622 * 87.71691 * 22 20 18 24 24 H 1.48499 * 109.47361 * 327.71597 * 22 20 18 25 25 H 1.48509 * 109.47038 * 207.71635 * 22 20 18 26 26 C 1.40710 * 119.51502 * 0.28206 * 17 16 15 27 27 C 1.37624 * 119.74216 * 359.41830 * 26 17 16 28 28 C 1.47428 * 125.65206 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46947 * 59.99699 * 1 2 3 30 30 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47496 * 299.99719 * 1 2 3 32 32 H 1.09002 * 109.47016 * 240.00492 * 2 1 3 33 33 H 1.08996 * 109.47301 * 120.00148 * 2 1 3 34 34 H 1.09004 * 109.88297 * 61.68229 * 6 5 3 35 35 H 1.09004 * 110.00992 * 300.59293 * 6 5 3 36 36 H 1.09001 * 110.71982 * 263.82739 * 7 6 5 37 37 H 1.09006 * 110.72222 * 140.55436 * 7 6 5 38 38 H 1.08992 * 109.47161 * 59.99512 * 13 12 10 39 39 H 1.09002 * 109.46831 * 299.99978 * 13 12 10 40 40 H 1.07997 * 119.86980 * 359.97328 * 15 14 13 41 41 H 1.08002 * 120.12578 * 180.02562 * 16 15 14 42 42 H 0.97003 * 119.99973 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.13004 * 179.70079 * 26 17 16 44 44 H 1.07997 * 119.87414 * 180.32008 * 27 26 17 45 45 H 1.08998 * 110.36373 * 36.98418 * 28 5 3 46 46 H 1.09002 * 110.36151 * 274.66342 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.4181 0.6491 0.0017 7 6 5.7689 1.3949 0.0303 8 6 5.3882 2.7809 0.6147 9 1 5.3389 2.7458 1.7030 10 6 6.3520 3.8442 0.1547 11 8 5.9540 4.7769 -0.5022 12 8 7.6525 3.7551 0.4747 13 6 8.5228 4.8153 -0.0018 14 6 9.9349 4.5480 0.4516 15 6 10.7856 3.8031 -0.3506 16 6 12.0772 3.5533 0.0532 17 6 12.5334 4.0574 1.2852 18 6 13.8587 3.8075 1.7101 19 1 14.3920 2.9458 1.3368 20 6 14.4792 4.6766 2.6146 21 7 13.9921 5.8751 2.8090 22 14 16.0028 4.1254 3.5442 23 1 17.2116 4.4249 2.7354 24 1 15.9264 2.6642 3.7977 25 1 16.0816 4.8489 4.8387 26 6 11.6595 4.8075 2.0936 27 6 10.3738 5.0503 1.6669 28 6 3.9832 3.0020 0.0011 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.3493 0.0411 -0.9004 35 1 4.3258 0.0153 0.8836 36 1 6.1734 1.4988 -0.9765 37 1 6.4781 0.8835 0.6812 38 1 8.1866 5.7703 0.4018 39 1 8.4908 4.8497 -1.0908 40 1 10.4333 3.4176 -1.2958 41 1 12.7385 2.9732 -0.5734 42 1 14.4224 6.4777 3.4357 43 1 11.9978 5.1951 3.0432 44 1 9.7029 5.6301 2.2833 45 1 3.4050 3.6917 0.6159 46 1 4.0693 3.3809 -1.0173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271864823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:43 Heat of formation + Delta-G solvation = -129.534821 kcal Electronic energy + Delta-G solvation = -26945.633581 eV Core-core repulsion = 22991.726096 eV Total energy + Delta-G solvation = -3953.907485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87316 -40.87023 -39.52274 -38.51106 -37.44918 -35.68295 -33.95975 -32.98513 -32.40583 -31.22604 -30.28241 -29.01534 -26.79817 -25.51511 -23.96601 -23.44333 -22.94464 -21.86185 -21.30975 -20.22315 -19.26400 -18.88056 -18.34591 -17.96055 -17.40562 -17.08861 -16.74999 -16.48194 -15.99735 -15.70145 -15.50234 -15.27732 -14.68593 -14.62675 -14.39213 -14.13176 -13.99095 -13.86612 -13.76575 -13.53136 -13.28596 -13.13473 -13.04209 -12.90550 -12.77657 -12.60111 -12.44345 -12.40463 -12.19696 -12.06929 -11.89279 -11.69175 -11.59232 -11.40490 -11.28314 -11.03182 -10.97466 -9.76547 -9.43251 -9.33035 -8.68684 -6.39356 0.71656 1.09907 1.12050 1.38340 1.41423 1.53297 1.57306 1.68537 2.12740 2.19864 2.72170 3.12170 3.39687 3.65633 3.73240 3.81266 4.02830 4.08597 4.09877 4.13396 4.20426 4.22205 4.28922 4.48151 4.52865 4.53730 4.56786 4.69402 4.74138 4.80005 4.93448 5.01070 5.01532 5.04702 5.10876 5.12294 5.17757 5.30749 5.37154 5.39406 5.47462 5.65582 5.88621 6.06223 6.14624 6.32442 6.43382 6.64796 6.68551 6.88991 6.97537 7.08916 8.28057 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.028432 B = 0.001853 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.568597 B =15110.209959 C =15482.089325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.517 3.483 4 O -0.593 6.593 5 N -0.621 5.621 6 C 0.100 3.900 7 C -0.115 4.115 8 C -0.092 4.092 9 H 0.142 0.858 10 C 0.470 3.530 11 O -0.543 6.543 12 O -0.350 6.350 13 C 0.141 3.859 14 C -0.229 4.229 15 C -0.063 4.063 16 C -0.243 4.243 17 C 0.087 3.913 18 C -0.492 4.492 19 H 0.081 0.919 20 C 0.035 3.965 21 N -0.820 5.820 22 Si 0.983 3.017 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.267 1.267 26 C -0.193 4.193 27 C -0.081 4.081 28 C 0.124 3.876 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.290 0.710 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.688 -14.231 -2.343 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.309 3.691 4 O -0.473 6.473 5 N -0.356 5.356 6 C -0.021 4.021 7 C -0.152 4.152 8 C -0.112 4.112 9 H 0.159 0.841 10 C 0.314 3.686 11 O -0.433 6.433 12 O -0.266 6.266 13 C 0.069 3.931 14 C -0.230 4.230 15 C -0.081 4.081 16 C -0.263 4.263 17 C 0.084 3.916 18 C -0.521 4.521 19 H 0.099 0.901 20 C -0.181 4.181 21 N -0.445 5.445 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.181 1.181 25 H -0.191 1.191 26 C -0.212 4.212 27 C -0.100 4.100 28 C 0.000 4.000 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.220 -13.261 -2.429 21.870 hybrid contribution 0.880 0.909 0.280 1.295 sum -16.341 -12.352 -2.150 20.596 Atomic orbital electron populations 1.21562 0.93599 1.02771 1.01726 1.21695 0.97889 0.90466 1.06852 1.21406 0.79824 0.93389 0.74509 1.90702 1.55621 1.48731 1.52286 1.48660 1.05885 1.07830 1.73179 1.22377 0.83995 0.90585 1.05163 1.22725 0.98047 0.91415 1.03062 1.22173 0.90854 0.93959 1.04205 0.84082 1.23774 0.82648 0.86000 0.76181 1.90655 1.79124 1.35187 1.38347 1.86661 1.18779 1.50359 1.70845 1.21545 0.85453 0.87749 0.98399 1.18955 0.93829 1.11126 0.99133 1.20701 0.93206 0.95923 0.98304 1.21167 0.97141 1.10338 0.97629 1.18057 0.93421 0.89571 0.90517 1.19925 0.98568 1.09877 1.23744 0.90116 1.26819 1.02171 0.93463 0.95632 1.69868 1.39805 1.05948 1.28919 0.85188 0.76874 0.79776 0.77791 1.18603 1.18060 1.19145 1.21261 0.93282 1.05960 1.00741 1.20771 0.95414 0.98440 0.95330 1.21831 0.90983 0.86087 1.01060 0.93798 0.89290 0.93656 0.86286 0.86026 0.88270 0.87556 0.90156 0.86332 0.91766 0.90905 0.86198 0.87809 0.89924 0.87918 0.87750 0.91219 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.20 71.98 0.66 -1.00 16 2 C -0.13 -1.25 5.61 29.85 0.17 -1.08 16 3 C 0.52 10.20 7.85 87.66 0.69 10.88 16 4 O -0.59 -17.79 16.24 -3.03 -0.05 -17.84 16 5 N -0.62 -10.55 3.33 -811.79 -2.70 -13.25 16 6 C 0.10 0.86 6.49 86.73 0.56 1.42 16 7 C -0.11 -1.43 6.40 31.78 0.20 -1.23 16 8 C -0.09 -1.75 3.54 -10.15 -0.04 -1.78 16 9 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 10 C 0.47 13.12 7.26 71.24 0.52 13.64 16 11 O -0.54 -18.41 15.55 21.99 0.34 -18.06 16 12 O -0.35 -11.10 10.19 -51.38 -0.52 -11.63 16 13 C 0.14 4.92 5.58 71.24 0.40 5.32 16 14 C -0.23 -9.52 5.54 -19.67 -0.11 -9.63 16 15 C -0.06 -2.64 9.67 22.22 0.21 -2.43 16 16 C -0.24 -11.46 9.80 22.73 0.22 -11.23 16 17 C 0.09 4.56 5.57 -21.29 -0.12 4.44 16 18 C -0.49 -25.65 9.06 23.46 0.21 -25.44 16 19 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 20 C 0.03 1.71 5.15 85.26 0.44 2.14 16 21 N -0.82 -41.77 10.95 21.83 0.24 -41.53 16 22 Si 0.98 36.63 29.59 68.60 2.03 38.66 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 26 C -0.19 -9.94 8.69 22.73 0.20 -9.74 16 27 C -0.08 -3.69 9.67 22.22 0.21 -3.47 16 28 C 0.12 2.70 5.98 86.85 0.52 3.22 16 29 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 39 H 0.07 2.39 8.07 -2.39 -0.02 2.38 16 40 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 43 H 0.10 5.53 6.17 -2.91 -0.02 5.51 16 44 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 45 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 46 H 0.06 1.64 7.51 -2.39 -0.02 1.62 16 Total: -1.00 -69.82 387.68 5.26 -64.56 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.97 Total: 25.06 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 4.96 Total: -25.96 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -2.46 Total: -54.78 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.23 Total: -47.53 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -69.82 5.26 -64.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271864823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.979 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds