Wall clock time and date at job start Tue Mar 31 2020 17:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99697 * 2 1 4 4 O 1.20829 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99936 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.69994 * 359.62367 * 5 3 2 7 7 C 1.52756 * 109.51044 * 239.50563 * 5 3 2 8 8 C 1.53046 * 109.38100 * 185.70840 * 7 5 3 9 9 H 1.09003 * 109.45566 * 301.21573 * 8 7 5 10 10 C 1.52995 * 109.44677 * 181.25036 * 8 7 5 11 11 C 1.53044 * 109.54062 * 61.23503 * 8 7 5 12 12 C 1.53188 * 109.31219 * 298.63825 * 11 8 7 13 13 N 1.46924 * 108.77853 * 54.63319 * 12 11 8 14 14 C 1.34778 * 120.63249 * 126.36966 * 13 12 11 15 15 O 1.21590 * 120.00266 * 188.66018 * 14 13 12 16 16 C 1.47640 * 119.99911 * 8.65966 * 14 13 12 17 17 C 1.40014 * 119.89524 * 196.82823 * 16 14 13 18 18 C 1.36315 * 120.10531 * 179.97438 * 17 16 14 19 19 C 1.40892 * 119.89400 * 0.02562 * 18 17 16 20 20 C 1.41108 * 120.10030 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00226 * 330.67156 * 20 19 18 22 22 C 1.40232 * 119.99528 * 150.67648 * 20 19 18 23 23 N 1.30638 * 120.00134 * 349.57699 * 22 20 19 24 24 Si 1.86796 * 119.99837 * 169.57305 * 22 20 19 25 25 H 1.48501 * 109.47579 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47566 * 300.00148 * 24 22 20 27 27 H 1.48502 * 109.47076 * 59.99748 * 24 22 20 28 28 C 1.40886 * 119.78981 * 0.27408 * 19 18 17 29 29 C 1.36314 * 119.89299 * 359.39852 * 28 19 18 30 30 H 1.09002 * 109.47156 * 60.00148 * 1 2 3 31 31 H 1.08997 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47792 * 300.00339 * 1 2 3 33 33 H 1.08995 * 109.56991 * 65.66659 * 7 5 3 34 34 H 1.08999 * 109.38624 * 305.63006 * 7 5 3 35 35 H 1.08998 * 109.47601 * 299.93625 * 10 8 7 36 36 H 1.09004 * 109.47456 * 59.93829 * 10 8 7 37 37 H 1.09003 * 109.47187 * 179.97438 * 10 8 7 38 38 H 1.08995 * 109.49371 * 178.68301 * 11 8 7 39 39 H 1.08996 * 109.49285 * 58.58543 * 11 8 7 40 40 H 1.09006 * 109.58827 * 294.84764 * 12 11 8 41 41 H 1.08994 * 109.70316 * 174.49408 * 12 11 8 42 42 H 1.07999 * 119.94533 * 0.02562 * 17 16 14 43 43 H 1.07999 * 120.05322 * 180.02562 * 18 17 16 44 44 H 0.97000 * 120.00497 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.05189 * 179.71861 * 28 19 18 46 46 H 1.08000 * 119.94633 * 180.34335 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9870 0.2694 0.0077 7 6 4.0370 2.0316 1.2413 8 6 5.5522 2.2344 1.1681 9 1 6.0456 1.2647 1.1020 10 6 6.0297 2.9647 2.4248 11 6 5.8980 3.0677 -0.0682 12 6 5.4492 2.3178 -1.3263 13 7 4.0224 1.9912 -1.1985 14 6 3.1477 2.3467 -2.1603 15 8 1.9533 2.2136 -1.9753 16 6 3.6397 2.8977 -3.4386 17 6 2.7626 3.5862 -4.2854 18 6 3.2125 4.0972 -5.4664 19 6 4.5623 3.9312 -5.8346 20 6 5.0327 4.4589 -7.0558 21 1 4.3617 4.5557 -7.8964 22 6 6.3717 4.8574 -7.1779 23 7 7.1299 4.9336 -6.1167 24 14 7.0711 5.2792 -8.8578 25 1 8.4972 5.6685 -8.7168 26 1 6.9663 4.0960 -9.7490 27 1 6.3056 6.4091 -9.4432 28 6 5.4395 3.2322 -4.9820 29 6 4.9820 2.7305 -3.8000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.7894 1.4581 2.1345 34 1 3.5418 3.0017 1.2831 35 1 5.5368 3.9346 2.4909 36 1 5.7836 2.3714 3.3055 37 1 7.1089 3.1090 2.3733 38 1 6.9749 3.2314 -0.1069 39 1 5.3851 4.0280 -0.0147 40 1 6.0265 1.3990 -1.4296 41 1 5.6030 2.9465 -2.2033 42 1 1.7283 3.7133 -4.0021 43 1 2.5353 4.6285 -6.1187 44 1 8.0559 5.2096 -6.2011 45 1 6.4739 3.0985 -5.2622 46 1 5.6551 2.1994 -3.1433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274744391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:24 Heat of formation + Delta-G solvation = -63.534609 kcal Electronic energy + Delta-G solvation = -29340.957767 eV Core-core repulsion = 25389.912266 eV Total energy + Delta-G solvation = -3951.045501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90348 -39.18881 -37.72814 -36.96606 -35.84382 -34.09593 -33.66672 -31.98257 -29.92182 -29.53456 -28.37045 -27.56692 -25.95059 -24.20789 -23.70887 -22.11271 -21.04182 -20.44965 -20.30852 -18.83149 -17.58790 -17.36115 -16.58188 -16.17976 -15.72369 -15.63643 -15.35119 -14.86189 -14.63466 -14.29920 -14.04272 -13.78056 -13.48818 -13.28877 -13.04854 -12.89400 -12.66173 -12.59507 -12.09332 -12.01129 -11.87269 -11.81927 -11.66047 -11.45164 -11.31946 -11.25716 -11.05880 -10.96465 -10.73825 -10.65686 -10.46984 -10.28857 -9.97705 -9.81069 -9.45393 -9.19656 -8.62450 -8.33794 -7.68977 -7.50467 -6.98024 -4.62834 2.15890 2.54511 2.90810 2.94151 2.95919 2.97425 2.99754 3.50254 3.74722 3.84838 4.52322 4.65786 4.71851 4.73867 4.99480 5.12822 5.18128 5.30201 5.38539 5.42350 5.49490 5.50097 5.58091 5.59576 5.67883 5.73960 5.74598 5.86753 5.95061 6.02157 6.07752 6.13670 6.15598 6.28770 6.40031 6.69627 6.74364 6.82878 6.86428 7.00747 7.10516 7.42463 7.55742 7.72928 7.83746 7.99235 8.06934 8.27110 8.38523 8.62726 8.72855 8.96997 9.93487 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.003459 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.969560 B = 8092.769076 C = 9529.872487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.368 6.368 3 C 0.471 3.529 4 O -0.470 6.470 5 C 0.161 3.839 6 H 0.093 0.907 7 C -0.118 4.118 8 C -0.089 4.089 9 H 0.074 0.926 10 C -0.145 4.145 11 C -0.134 4.134 12 C 0.067 3.933 13 N -0.609 5.609 14 C 0.567 3.433 15 O -0.544 6.544 16 C -0.272 4.272 17 C -0.024 4.024 18 C -0.233 4.233 19 C 0.128 3.872 20 C -0.446 4.446 21 H 0.083 0.917 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.916 3.084 25 H -0.276 1.276 26 H -0.262 1.262 27 H -0.263 1.263 28 C -0.168 4.168 29 C -0.103 4.103 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.150 0.850 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.286 0.714 45 H 0.123 0.877 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 -6.598 12.049 13.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.286 6.286 3 C 0.312 3.688 4 O -0.354 6.354 5 C 0.055 3.945 6 H 0.110 0.890 7 C -0.157 4.157 8 C -0.108 4.108 9 H 0.092 0.908 10 C -0.202 4.202 11 C -0.172 4.172 12 C -0.054 4.054 13 N -0.346 5.346 14 C 0.364 3.636 15 O -0.425 6.425 16 C -0.276 4.276 17 C -0.043 4.043 18 C -0.252 4.252 19 C 0.125 3.875 20 C -0.475 4.475 21 H 0.101 0.899 22 C -0.146 4.146 23 N -0.407 5.407 24 Si 0.740 3.260 25 H -0.201 1.201 26 H -0.186 1.186 27 H -0.188 1.188 28 C -0.187 4.187 29 C -0.121 4.121 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.167 0.833 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.141 0.859 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.880 -6.280 12.217 13.765 hybrid contribution 0.224 0.324 -0.659 0.768 sum 1.103 -5.956 11.558 13.049 Atomic orbital electron populations 1.23098 0.76790 1.02655 1.02463 1.86400 1.23129 1.33866 1.85161 1.22747 0.90902 0.81755 0.73425 1.90654 1.66356 1.35999 1.42347 1.20433 0.88251 0.97642 0.88125 0.88958 1.21876 0.96783 1.01656 0.95351 1.21111 0.94338 0.99722 0.95593 0.90799 1.21807 1.01141 1.00503 0.96783 1.22080 1.01581 0.99546 0.93975 1.23263 0.79735 1.01011 1.01367 1.47834 1.08942 1.59812 1.18051 1.18834 0.85199 0.76106 0.83481 1.90797 1.15915 1.55854 1.79935 1.18819 0.95357 1.16640 0.96773 1.20348 0.97108 0.93746 0.93138 1.20777 0.97180 1.09093 0.98173 1.17823 0.90896 0.86669 0.92081 1.19791 0.94758 1.34725 0.98189 0.89934 1.26041 0.96712 0.93206 0.98687 1.69681 1.08153 1.32510 1.30316 0.86226 0.78157 0.80040 0.81598 1.20075 1.18596 1.18768 1.21090 1.00760 1.01571 0.95307 1.21489 0.93872 0.99756 0.96992 0.91665 0.88867 0.92615 0.90645 0.90218 0.92572 0.92771 0.92373 0.90455 0.91174 0.91606 0.83298 0.88283 0.88365 0.90310 0.85903 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.66 16 2 O -0.37 -6.03 10.56 -39.28 -0.41 -6.45 16 3 C 0.47 8.57 4.87 36.01 0.18 8.74 16 4 O -0.47 -10.13 13.71 -27.19 -0.37 -10.51 16 5 C 0.16 2.46 3.32 -68.97 -0.23 2.23 16 6 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.12 -1.47 4.58 -26.83 -0.12 -1.60 16 8 C -0.09 -0.93 2.68 -90.58 -0.24 -1.17 16 9 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 10 C -0.15 -1.28 9.19 37.15 0.34 -0.94 16 11 C -0.13 -1.61 5.36 -26.61 -0.14 -1.76 16 12 C 0.07 0.97 4.66 -3.71 -0.02 0.95 16 13 N -0.61 -10.67 2.98 -167.97 -0.50 -11.17 16 14 C 0.57 12.43 7.42 -12.42 -0.09 12.34 16 15 O -0.54 -13.33 11.61 -20.22 -0.23 -13.57 16 16 C -0.27 -6.20 5.73 -104.73 -0.60 -6.80 16 17 C -0.02 -0.58 9.52 -39.61 -0.38 -0.95 16 18 C -0.23 -5.63 9.73 -39.27 -0.38 -6.02 16 19 C 0.13 3.23 5.54 -106.80 -0.59 2.63 16 20 C -0.45 -11.01 9.05 -37.75 -0.34 -11.35 16 21 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 22 C 0.07 1.69 5.25 -17.31 -0.09 1.60 16 23 N -0.78 -18.32 10.86 55.56 0.60 -17.72 16 24 Si 0.92 17.21 29.57 -169.99 -5.03 12.19 16 25 H -0.28 -5.04 7.11 56.52 0.40 -4.63 16 26 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 27 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 28 C -0.17 -3.98 8.59 -39.27 -0.34 -4.32 16 29 C -0.10 -2.20 7.61 -39.61 -0.30 -2.51 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.17 7.94 -51.93 -0.41 0.75 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 41 H 0.15 2.49 3.52 -66.05 -0.23 2.25 16 42 H 0.10 2.33 7.73 -52.49 -0.41 1.93 16 43 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 45 H 0.12 2.93 6.26 -52.48 -0.33 2.61 16 46 H 0.13 2.31 4.17 -52.49 -0.22 2.09 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -30.41 365.70 -9.36 -39.77 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.63 Total: 9.21 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.29 Total: -7.27 kcal Atomic # 7 Polarization: -28.99 SS G_CDS: 0.10 Total: -28.89 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -1.02 Total: -30.52 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.41 -9.36 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274744391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.766 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds